Wall clock time and date at job start Tue Mar 31 2020 12:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99750 * 2 1 4 4 H 1.48494 * 109.47415 * 240.00519 * 3 2 1 5 5 H 1.48506 * 109.47200 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46821 * 120.00079 * 3 2 1 7 7 C 1.38804 * 120.00554 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00702 * 197.35409 * 7 2 1 9 9 N 1.36944 * 119.99723 * 17.35018 * 7 2 1 10 10 C 1.46917 * 120.63334 * 27.67797 * 9 7 2 11 11 C 1.53195 * 108.77632 * 126.41102 * 10 9 7 12 12 C 1.53033 * 109.31118 * 54.63683 * 11 10 9 13 13 C 1.53039 * 109.52816 * 298.64429 * 12 11 10 14 14 H 1.09006 * 109.49478 * 301.40060 * 13 12 11 15 15 C 1.53002 * 109.49860 * 181.31222 * 13 12 11 16 16 N 1.46496 * 109.47305 * 174.99868 * 15 13 12 17 17 C 1.34779 * 119.99949 * 179.97438 * 16 15 13 18 18 O 1.21609 * 119.99922 * 359.97438 * 17 16 15 19 19 C 1.47296 * 119.99546 * 179.97438 * 17 16 15 20 20 C 1.37936 * 125.89623 * 179.69235 * 19 17 16 21 21 C 1.39447 * 107.45871 * 179.84422 * 20 19 17 22 22 C 1.37931 * 107.46185 * 0.41446 * 21 20 19 23 23 C 1.47292 * 125.89866 * 179.76429 * 22 21 20 24 24 N 1.34779 * 120.00199 * 179.97438 * 23 22 21 25 25 O 1.21618 * 120.00266 * 359.97175 * 23 22 21 26 26 N 1.36750 * 108.19772 * 359.74420 * 22 21 20 27 27 H 0.97005 * 125.65634 * 180.02562 * 26 22 21 28 28 C 1.46923 * 120.62817 * 207.70224 * 9 7 2 29 29 H 0.96998 * 120.00355 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.58578 * 6.62816 * 10 9 7 31 31 H 1.08995 * 109.70784 * 246.27193 * 10 9 7 32 32 H 1.08997 * 109.49831 * 294.68569 * 11 10 9 33 33 H 1.08996 * 109.49623 * 174.59381 * 11 10 9 34 34 H 1.09006 * 109.46002 * 58.65815 * 12 11 10 35 35 H 1.09003 * 109.45981 * 178.62730 * 12 11 10 36 36 H 1.09000 * 109.46692 * 294.99840 * 15 13 12 37 37 H 1.08998 * 109.47300 * 54.99383 * 15 13 12 38 38 H 0.96999 * 119.99831 * 359.97438 * 16 15 13 39 39 H 1.07999 * 126.27069 * 359.97438 * 20 19 17 40 40 H 1.07998 * 126.26523 * 180.16455 * 21 20 19 41 41 H 0.97005 * 119.99424 * 359.97438 * 24 23 22 42 42 H 0.97000 * 120.00427 * 180.02562 * 24 23 22 43 43 H 1.08995 * 109.59196 * 353.37295 * 28 9 7 44 44 H 1.08995 * 109.58955 * 113.65893 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0535 -1.2235 0.2784 9 7 1.3724 -2.3609 -0.3547 10 6 0.2278 -2.3340 -1.2754 11 6 0.5006 -3.3037 -2.4296 12 6 0.8185 -4.6890 -1.8624 13 6 2.0741 -4.6092 -0.9911 14 1 2.9080 -4.2391 -1.5877 15 6 2.4101 -6.0007 -0.4508 16 7 3.6764 -5.9466 0.2838 17 6 4.1738 -7.0628 0.8524 18 8 3.5711 -8.1147 0.7560 19 6 5.4473 -7.0085 1.5905 20 6 6.0620 -8.0697 2.2219 21 6 7.2409 -7.5911 2.7925 22 6 7.3214 -6.2439 2.5078 23 6 8.4049 -5.3366 2.9230 24 7 8.3634 -4.0347 2.5770 25 8 9.3370 -5.7623 3.5781 26 7 6.2216 -5.8962 1.7732 27 1 6.0237 -5.0080 1.4371 28 6 1.8193 -3.6546 0.1792 29 1 -0.4850 0.8400 0.0004 30 1 0.0985 -1.3255 -1.6684 31 1 -0.6757 -2.6391 -0.7477 32 1 1.3491 -2.9458 -3.0127 33 1 -0.3802 -3.3656 -3.0687 34 1 -0.0206 -5.0357 -1.2591 35 1 0.9891 -5.3868 -2.6822 36 1 1.6159 -6.3321 0.2181 37 1 2.5014 -6.7007 -1.2813 38 1 4.1569 -5.1076 0.3610 39 1 5.6981 -9.0856 2.2646 40 1 7.9575 -8.1687 3.3576 41 1 7.6201 -3.6953 2.0543 42 1 9.0771 -3.4372 2.8501 43 1 2.7400 -3.5176 0.7462 44 1 1.0480 -4.0678 0.8292 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023592657.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:35 Heat of formation + Delta-G solvation = -46.679525 kcal Electronic energy + Delta-G solvation = -26634.903791 eV Core-core repulsion = 22779.682162 eV Total energy + Delta-G solvation = -3855.221629 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.62945 -40.68967 -39.84963 -39.21600 -36.35562 -34.93557 -34.73418 -32.49793 -32.28521 -31.86496 -30.58043 -27.31007 -27.01709 -24.98838 -23.82350 -22.91022 -22.29676 -21.53037 -21.17196 -20.75118 -20.00839 -18.67382 -18.28558 -17.82676 -16.97943 -16.85152 -16.71552 -16.20723 -15.86853 -15.68726 -15.45308 -15.14376 -15.03626 -14.97660 -14.57116 -14.49071 -14.05549 -13.82069 -13.76039 -13.68756 -13.55300 -13.02056 -12.84830 -12.48101 -12.30985 -11.98440 -11.81933 -11.69332 -11.56473 -11.41619 -11.15401 -11.06631 -10.87530 -10.51377 -10.25741 -10.19022 -9.44672 -8.67511 -7.85685 -5.31252 -0.11051 1.06298 1.47927 1.51008 1.56957 1.68002 2.02539 2.19770 2.24002 2.38744 2.51841 3.29802 3.57621 3.68719 3.82478 3.98392 4.01799 4.05215 4.15446 4.21197 4.41905 4.57059 4.62184 4.76233 4.77260 4.87917 4.91071 5.00381 5.05123 5.11971 5.18157 5.29995 5.34029 5.37014 5.45025 5.58111 5.65665 5.67753 5.74466 5.79761 6.02893 6.29458 6.38517 6.41493 7.00690 7.09571 7.15633 7.87527 8.39707 9.20576 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011090 B = 0.003470 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.303999 B = 8067.106392 C =10316.619964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.052 4.052 3 Si 0.964 3.036 4 H -0.277 1.277 5 H -0.302 1.302 6 H -0.273 1.273 7 C -0.261 4.261 8 H 0.077 0.923 9 N -0.608 5.608 10 C 0.171 3.829 11 C -0.130 4.130 12 C -0.098 4.098 13 C -0.100 4.100 14 H 0.081 0.919 15 C 0.136 3.864 16 N -0.712 5.712 17 C 0.587 3.413 18 O -0.560 6.560 19 C -0.015 4.015 20 C -0.128 4.128 21 C -0.128 4.128 22 C -0.021 4.021 23 C 0.594 3.406 24 N -0.832 5.832 25 O -0.568 6.568 26 N -0.503 5.503 27 H 0.432 0.568 28 C 0.151 3.849 29 H 0.248 0.752 30 H 0.050 0.950 31 H -0.010 1.010 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.407 0.593 39 H 0.161 0.839 40 H 0.163 0.837 41 H 0.413 0.587 42 H 0.419 0.581 43 H 0.060 0.940 44 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.516 -10.442 -0.658 16.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.247 4.247 3 Si 0.793 3.207 4 H -0.203 1.203 5 H -0.228 1.228 6 H -0.198 1.198 7 C -0.391 4.391 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.046 3.954 11 C -0.169 4.169 12 C -0.136 4.136 13 C -0.121 4.121 14 H 0.099 0.901 15 C 0.013 3.987 16 N -0.363 5.363 17 C 0.374 3.626 18 O -0.439 6.439 19 C -0.133 4.133 20 C -0.154 4.154 21 C -0.154 4.154 22 C -0.139 4.139 23 C 0.380 3.620 24 N -0.396 5.396 25 O -0.447 6.447 26 N -0.102 5.102 27 H 0.273 0.727 28 C 0.025 3.975 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.009 0.991 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.243 0.757 39 H 0.179 0.821 40 H 0.180 0.820 41 H 0.243 0.757 42 H 0.252 0.748 43 H 0.079 0.921 44 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 12.434 -11.262 -0.387 16.780 hybrid contribution -0.151 2.398 -0.044 2.404 sum 12.283 -8.863 -0.431 15.153 Atomic orbital electron populations 1.70193 1.06886 1.25793 1.55489 1.25791 0.95885 1.01573 1.01475 0.85388 0.77551 0.79337 0.78432 1.20255 1.22844 1.19834 1.19540 0.93218 0.85818 1.40522 0.90576 1.44295 1.35770 1.02174 1.50904 1.20629 0.87724 0.97824 0.89258 1.21990 1.00925 0.95997 0.97974 1.21340 0.96605 0.96696 0.98972 1.21728 0.99198 0.93315 0.97826 0.90066 1.21371 0.84448 0.97070 0.95841 1.45859 1.24824 1.11087 1.54560 1.17297 0.83223 0.83835 0.78251 1.90821 1.60529 1.30917 1.61595 1.20468 0.95339 0.88614 1.08922 1.21463 0.95147 0.99136 0.99688 1.21475 0.98761 0.92330 1.02852 1.20514 0.91489 0.96151 1.05792 1.17181 0.83818 0.82454 0.78578 1.43598 1.29482 1.08948 1.57552 1.90871 1.35686 1.76994 1.41146 1.41829 1.16909 1.10745 1.40722 0.72737 1.21042 0.97237 0.85722 0.93460 0.94315 0.93111 0.99144 0.92705 0.91505 0.92710 0.90066 0.92000 0.90301 0.75681 0.82148 0.81953 0.75686 0.74798 0.92143 0.97746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.51 11.19 21.65 0.24 -53.27 16 2 C -0.05 -2.73 4.91 84.86 0.42 -2.31 16 3 Si 0.96 41.84 29.59 68.60 2.03 43.87 16 4 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 5 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 7 C -0.26 -13.01 9.58 84.03 0.81 -12.20 16 8 H 0.08 3.51 7.89 -2.91 -0.02 3.49 16 9 N -0.61 -27.64 2.99 -699.19 -2.09 -29.74 16 10 C 0.17 7.78 5.31 86.37 0.46 8.23 16 11 C -0.13 -4.36 6.08 30.67 0.19 -4.17 16 12 C -0.10 -2.69 5.17 30.62 0.16 -2.53 16 13 C -0.10 -2.66 2.37 -10.72 -0.03 -2.69 16 14 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 15 C 0.14 3.14 5.07 86.38 0.44 3.58 16 16 N -0.71 -14.48 5.33 -466.51 -2.49 -16.96 16 17 C 0.59 13.94 7.81 86.62 0.68 14.62 16 18 O -0.56 -17.38 16.87 -4.06 -0.07 -17.45 16 19 C -0.02 -0.30 7.04 40.69 0.29 -0.02 16 20 C -0.13 -2.58 10.60 22.49 0.24 -2.35 16 21 C -0.13 -2.46 10.60 22.49 0.24 -2.22 16 22 C -0.02 -0.38 7.04 40.69 0.29 -0.09 16 23 C 0.59 10.91 8.08 86.62 0.70 11.61 16 24 N -0.83 -8.30 8.87 -175.98 -1.56 -9.86 16 25 O -0.57 -15.07 17.71 -4.09 -0.07 -15.14 16 26 N -0.50 -7.23 5.90 -172.56 -1.02 -8.25 16 27 H 0.43 3.53 7.34 -92.70 -0.68 2.85 16 28 C 0.15 5.30 5.60 86.35 0.48 5.78 16 29 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 30 H 0.05 2.66 6.04 -2.38 -0.01 2.64 16 31 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 32 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.41 6.44 6.80 -92.71 -0.63 5.81 16 39 H 0.16 3.04 8.06 -2.91 -0.02 3.01 16 40 H 0.16 2.85 8.06 -2.91 -0.02 2.82 16 41 H 0.41 1.93 7.93 -92.70 -0.74 1.20 16 42 H 0.42 3.29 8.93 -92.71 -0.83 2.46 16 43 H 0.06 1.91 7.14 -2.39 -0.02 1.89 16 44 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 Total: -1.00 -72.92 364.80 -1.48 -74.40 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -1.80 Total: 17.16 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: 5.35 Total: 15.24 kcal Atomic # 7 Polarization: -111.16 SS G_CDS: -6.92 Total: -118.08 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -0.14 Total: -32.59 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -72.92 -1.48 -74.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023592657.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.717 kcal (2) G-P(sol) polarization free energy of solvation -72.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds