Wall clock time and date at job start Tue Mar 31 2020 12:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00230 * 2 1 4 4 H 1.48501 * 109.47080 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46924 * 299.99680 * 3 2 1 6 6 H 1.48499 * 109.47039 * 59.99769 * 3 2 1 7 7 C 1.38819 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00067 * 163.07553 * 7 2 1 9 9 N 1.36939 * 119.99871 * 343.07938 * 7 2 1 10 10 C 1.46926 * 120.63116 * 331.83548 * 9 7 2 11 11 C 1.53190 * 108.77251 * 233.58638 * 10 9 7 12 12 C 1.53038 * 109.31540 * 305.36481 * 11 10 9 13 13 C 1.53038 * 109.53804 * 61.36372 * 12 11 10 14 14 H 1.08995 * 109.50209 * 58.62296 * 13 12 11 15 15 C 1.53007 * 109.49971 * 178.68478 * 13 12 11 16 16 N 1.46493 * 109.47365 * 184.99948 * 15 13 12 17 17 C 1.34776 * 120.00361 * 180.02562 * 16 15 13 18 18 O 1.21606 * 119.99649 * 0.27507 * 17 16 15 19 19 C 1.47390 * 120.00270 * 180.02562 * 17 16 15 20 20 C 1.38210 * 126.46192 * 0.02562 * 19 17 16 21 21 N 1.34266 * 108.39372 * 179.97438 * 20 19 17 22 22 H 0.96998 * 125.39277 * 180.02562 * 21 20 19 23 23 C 1.37780 * 109.21912 * 0.02562 * 21 20 19 24 24 C 1.46811 * 125.85050 * 179.97438 * 23 21 20 25 25 N 1.34770 * 119.99767 * 0.02653 * 24 23 21 26 26 O 1.21676 * 119.99764 * 180.02562 * 24 23 21 27 27 C 1.36353 * 108.29872 * 359.74388 * 23 21 20 28 28 C 1.46931 * 120.62891 * 151.80995 * 9 7 2 29 29 H 0.97000 * 119.99790 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.58560 * 113.79929 * 10 9 7 31 31 H 1.08994 * 109.58491 * 353.37346 * 10 9 7 32 32 H 1.08995 * 109.49903 * 185.41542 * 11 10 9 33 33 H 1.09000 * 109.52494 * 65.33408 * 11 10 9 34 34 H 1.09003 * 109.46234 * 301.34574 * 12 11 10 35 35 H 1.08999 * 109.45255 * 181.37930 * 12 11 10 36 36 H 1.09003 * 109.47034 * 65.00085 * 15 13 12 37 37 H 1.09001 * 109.47177 * 305.00688 * 15 13 12 38 38 H 0.97005 * 119.99936 * 359.97438 * 16 15 13 39 39 H 1.07997 * 125.80311 * 0.02562 * 20 19 17 40 40 H 0.96995 * 120.00728 * 359.97438 * 25 24 23 41 41 H 0.97006 * 119.99622 * 180.02562 * 25 24 23 42 42 H 1.08009 * 126.49585 * 180.24979 * 27 23 21 43 43 H 1.08997 * 109.58331 * 6.62481 * 28 9 7 44 44 H 1.08996 * 109.58440 * 246.20192 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2227 -0.2717 9 7 1.3699 -2.3623 0.3462 10 6 0.2260 -2.3399 1.2680 11 6 0.4974 -3.3191 2.4144 12 6 0.8118 -4.7008 1.8362 13 6 2.0671 -4.6174 0.9648 14 1 2.9023 -4.2544 1.5636 15 6 2.3994 -6.0056 0.4137 16 7 3.6653 -5.9491 -0.3213 17 6 4.1597 -7.0620 -0.8987 18 8 3.5523 -8.1121 -0.8137 19 6 5.4336 -7.0053 -1.6377 20 6 6.2278 -5.8891 -1.8210 21 7 7.2999 -6.2463 -2.5461 22 1 8.0175 -5.6529 -2.8177 23 6 7.2193 -7.5893 -2.8433 24 6 8.1993 -8.3582 -3.6204 25 7 9.2964 -7.7494 -4.1123 26 8 8.0209 -9.5451 -3.8202 27 6 6.0761 -8.0829 -2.2878 28 6 1.8135 -3.6530 -0.1981 29 1 -0.4850 0.8401 -0.0004 30 1 -0.6771 -2.6404 0.7368 31 1 0.0993 -1.3342 1.6687 32 1 -0.3831 -3.3840 3.0535 33 1 1.3470 -2.9679 3.0000 34 1 -0.0285 -5.0409 1.2309 35 1 0.9812 -5.4051 2.6506 36 1 1.6039 -6.3301 -0.2572 37 1 2.4894 -6.7121 1.2389 38 1 4.1474 -5.1104 -0.3930 39 1 6.0216 -4.8982 -1.4443 40 1 9.4385 -6.8032 -3.9533 41 1 9.9437 -8.2575 -4.6260 42 1 5.7267 -9.1037 -2.3371 43 1 2.7342 -3.5135 -0.7646 44 1 1.0398 -4.0604 -0.8487 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023746615.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:39 Heat of formation + Delta-G solvation = -21.144399 kcal Electronic energy + Delta-G solvation = -26299.063988 eV Core-core repulsion = 22444.949645 eV Total energy + Delta-G solvation = -3854.114343 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.87102 -39.49689 -38.93613 -37.68841 -34.75625 -34.25214 -33.02541 -31.67195 -30.59950 -30.45642 -29.49151 -25.70752 -25.28703 -23.50491 -22.97770 -22.04837 -20.91478 -20.57311 -19.81439 -19.43883 -18.88452 -17.41535 -16.77146 -16.44394 -16.11529 -15.65869 -15.46661 -15.10824 -14.85272 -14.33484 -14.29432 -13.94307 -13.80275 -13.58802 -13.43330 -13.33532 -12.81521 -12.60749 -12.32588 -12.19158 -12.15041 -11.29802 -11.06054 -10.76519 -10.69899 -10.50543 -10.25093 -10.24626 -10.19520 -9.99873 -9.88574 -9.57011 -9.43813 -9.42284 -8.89369 -8.66157 -8.51148 -6.70895 -5.83498 -3.26682 1.05470 1.66575 2.54804 2.93549 2.95725 3.31441 3.38698 3.40814 3.42694 3.56524 4.42945 4.45619 4.56127 4.72506 4.98135 5.12481 5.28745 5.43891 5.45553 5.53883 5.61889 5.67481 5.84702 5.98887 6.00462 6.09171 6.24228 6.25831 6.33426 6.37442 6.38414 6.55594 6.58509 6.70062 6.73285 6.77243 6.85414 6.89826 6.96071 7.37757 7.64260 7.69783 7.73662 7.74691 8.40050 8.41325 9.16150 9.79998 10.37305 11.24695 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014925 B = 0.002745 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.576645 B =10198.030699 C =11826.838437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.253 4.253 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.169 3.831 11 C -0.141 4.141 12 C -0.100 4.100 13 C -0.117 4.117 14 H 0.072 0.928 15 C 0.128 3.872 16 N -0.722 5.722 17 C 0.585 3.415 18 O -0.546 6.546 19 C -0.228 4.228 20 C 0.080 3.920 21 N -0.527 5.527 22 H 0.420 0.580 23 C -0.076 4.076 24 C 0.596 3.404 25 N -0.857 5.857 26 O -0.528 6.528 27 C -0.037 4.037 28 C 0.154 3.846 29 H 0.253 0.747 30 H 0.018 0.982 31 H 0.086 0.914 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.047 0.953 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.399 0.601 39 H 0.186 0.814 40 H 0.395 0.605 41 H 0.408 0.592 42 H 0.159 0.841 43 H 0.049 0.951 44 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.227 -9.564 -3.090 19.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.383 4.383 8 H 0.082 0.918 9 N -0.314 5.314 10 C 0.043 3.957 11 C -0.181 4.181 12 C -0.138 4.138 13 C -0.138 4.138 14 H 0.091 0.909 15 C 0.005 3.995 16 N -0.372 5.372 17 C 0.373 3.627 18 O -0.424 6.424 19 C -0.238 4.238 20 C -0.061 4.061 21 N -0.122 5.122 22 H 0.257 0.743 23 C -0.186 4.186 24 C 0.383 3.617 25 N -0.421 5.421 26 O -0.403 6.403 27 C -0.063 4.063 28 C 0.028 3.972 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.104 0.896 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.234 0.766 39 H 0.203 0.797 40 H 0.223 0.777 41 H 0.240 0.760 42 H 0.177 0.823 43 H 0.067 0.933 44 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 15.533 -10.894 -3.149 19.232 hybrid contribution 1.309 2.074 -0.292 2.470 sum 16.842 -8.820 -3.440 19.320 Atomic orbital electron populations 1.70045 1.05282 1.25409 1.53720 1.25056 0.95270 0.98414 1.00908 0.86251 0.79235 0.84090 0.77310 1.20344 1.21758 1.21566 1.19170 0.92421 0.84829 1.41864 0.91789 1.44050 1.35929 1.01344 1.50115 1.20796 0.88571 0.98266 0.88056 1.22167 1.00085 0.96014 0.99803 1.21343 0.96796 0.97688 0.98007 1.21948 0.98813 0.93686 0.99335 0.90924 1.21454 0.84749 0.97866 0.95473 1.45887 1.24907 1.11350 1.55104 1.17342 0.83618 0.83648 0.78118 1.90774 1.60513 1.30008 1.61129 1.19765 0.99082 0.94188 1.10752 1.22599 0.87494 0.99892 0.96156 1.41673 1.20195 1.08878 1.41446 0.74256 1.19952 1.01907 0.83890 1.12866 1.17025 0.80336 0.86366 0.78011 1.43706 1.25394 1.14151 1.58811 1.90914 1.76059 1.14547 1.58798 1.21140 0.91320 0.99580 0.94293 1.20897 0.97437 0.86792 0.92114 0.93644 0.96421 0.89624 0.93204 0.92791 0.92434 0.93394 0.91509 0.91917 0.76639 0.79748 0.77703 0.76020 0.82327 0.93252 0.96286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.47 11.20 55.49 0.62 -24.84 16 2 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 3 Si 0.90 20.75 29.59 -169.99 -5.03 15.72 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.25 -6.57 9.58 -15.06 -0.14 -6.71 16 8 H 0.06 1.60 7.89 -52.49 -0.41 1.18 16 9 N -0.59 -14.02 2.99 -172.32 -0.52 -14.54 16 10 C 0.17 3.89 5.30 -3.71 -0.02 3.87 16 11 C -0.14 -2.59 6.08 -26.61 -0.16 -2.75 16 12 C -0.10 -1.60 5.17 -26.69 -0.14 -1.74 16 13 C -0.12 -1.84 2.37 -90.50 -0.21 -2.06 16 14 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 15 C 0.13 1.83 5.07 -4.04 -0.02 1.81 16 16 N -0.72 -9.30 5.32 -61.40 -0.33 -9.62 16 17 C 0.59 8.46 7.81 -12.54 -0.10 8.37 16 18 O -0.55 -10.03 16.92 5.27 0.09 -9.94 16 19 C -0.23 -2.65 6.13 -105.02 -0.64 -3.30 16 20 C 0.08 0.61 11.43 -16.50 -0.19 0.42 16 21 N -0.53 -3.09 5.91 -9.30 -0.05 -3.14 16 22 H 0.42 0.75 8.14 -40.82 -0.33 0.42 16 23 C -0.08 -0.71 6.99 -82.41 -0.58 -1.29 16 24 C 0.60 5.67 8.06 -12.80 -0.10 5.57 16 25 N -0.86 -3.88 8.87 30.29 0.27 -3.61 16 26 O -0.53 -7.34 17.69 5.21 0.09 -7.25 16 27 C -0.04 -0.45 10.37 -39.10 -0.41 -0.85 16 28 C 0.15 2.97 5.60 -3.71 -0.02 2.95 16 29 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 2.22 6.06 -51.93 -0.31 1.91 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.40 4.28 6.62 -40.82 -0.27 4.01 16 39 H 0.19 0.86 7.44 -52.49 -0.39 0.47 16 40 H 0.40 0.50 7.91 -40.82 -0.32 0.18 16 41 H 0.41 1.42 8.93 -40.82 -0.36 1.06 16 42 H 0.16 2.09 8.06 -52.48 -0.42 1.67 16 43 H 0.05 0.89 7.14 -51.93 -0.37 0.51 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 364.46 15.07 5.49 5.49 Total: -1.00 -36.10 364.46 -8.33 -44.42 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -6.14 Total: 3.05 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -2.82 Total: 4.27 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -0.01 Total: -55.76 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: 0.18 Total: -17.19 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.10 -8.33 -44.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023746615.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.280 kcal (2) G-P(sol) polarization free energy of solvation -36.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds