Wall clock time and date at job start Tue Mar 31 2020 12:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00230 * 2 1 4 4 H 1.48501 * 109.47080 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46924 * 299.99680 * 3 2 1 6 6 H 1.48499 * 109.47039 * 59.99769 * 3 2 1 7 7 C 1.38819 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00067 * 163.07553 * 7 2 1 9 9 N 1.36939 * 119.99871 * 343.07938 * 7 2 1 10 10 C 1.46926 * 120.63116 * 331.83548 * 9 7 2 11 11 C 1.53190 * 108.77251 * 233.58638 * 10 9 7 12 12 C 1.53038 * 109.31540 * 305.36481 * 11 10 9 13 13 C 1.53038 * 109.53804 * 61.36372 * 12 11 10 14 14 H 1.08995 * 109.50209 * 58.62296 * 13 12 11 15 15 C 1.53007 * 109.49971 * 178.68478 * 13 12 11 16 16 N 1.46493 * 109.47365 * 184.99948 * 15 13 12 17 17 C 1.34776 * 120.00361 * 180.02562 * 16 15 13 18 18 O 1.21606 * 119.99649 * 0.27507 * 17 16 15 19 19 C 1.47390 * 120.00270 * 180.02562 * 17 16 15 20 20 C 1.38210 * 126.46192 * 0.02562 * 19 17 16 21 21 N 1.34266 * 108.39372 * 179.97438 * 20 19 17 22 22 H 0.96998 * 125.39277 * 180.02562 * 21 20 19 23 23 C 1.37780 * 109.21912 * 0.02562 * 21 20 19 24 24 C 1.46811 * 125.85050 * 179.97438 * 23 21 20 25 25 N 1.34770 * 119.99767 * 0.02653 * 24 23 21 26 26 O 1.21676 * 119.99764 * 180.02562 * 24 23 21 27 27 C 1.36353 * 108.29872 * 359.74388 * 23 21 20 28 28 C 1.46931 * 120.62891 * 151.80995 * 9 7 2 29 29 H 0.97000 * 119.99790 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.58560 * 113.79929 * 10 9 7 31 31 H 1.08994 * 109.58491 * 353.37346 * 10 9 7 32 32 H 1.08995 * 109.49903 * 185.41542 * 11 10 9 33 33 H 1.09000 * 109.52494 * 65.33408 * 11 10 9 34 34 H 1.09003 * 109.46234 * 301.34574 * 12 11 10 35 35 H 1.08999 * 109.45255 * 181.37930 * 12 11 10 36 36 H 1.09003 * 109.47034 * 65.00085 * 15 13 12 37 37 H 1.09001 * 109.47177 * 305.00688 * 15 13 12 38 38 H 0.97005 * 119.99936 * 359.97438 * 16 15 13 39 39 H 1.07997 * 125.80311 * 0.02562 * 20 19 17 40 40 H 0.96995 * 120.00728 * 359.97438 * 25 24 23 41 41 H 0.97006 * 119.99622 * 180.02562 * 25 24 23 42 42 H 1.08009 * 126.49585 * 180.24979 * 27 23 21 43 43 H 1.08997 * 109.58331 * 6.62481 * 28 9 7 44 44 H 1.08996 * 109.58440 * 246.20192 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2227 -0.2717 9 7 1.3699 -2.3623 0.3462 10 6 0.2260 -2.3399 1.2680 11 6 0.4974 -3.3191 2.4144 12 6 0.8118 -4.7008 1.8362 13 6 2.0671 -4.6174 0.9648 14 1 2.9023 -4.2544 1.5636 15 6 2.3994 -6.0056 0.4137 16 7 3.6653 -5.9491 -0.3213 17 6 4.1597 -7.0620 -0.8987 18 8 3.5523 -8.1121 -0.8137 19 6 5.4336 -7.0053 -1.6377 20 6 6.2278 -5.8891 -1.8210 21 7 7.2999 -6.2463 -2.5461 22 1 8.0175 -5.6529 -2.8177 23 6 7.2193 -7.5893 -2.8433 24 6 8.1993 -8.3582 -3.6204 25 7 9.2964 -7.7494 -4.1123 26 8 8.0209 -9.5451 -3.8202 27 6 6.0761 -8.0829 -2.2878 28 6 1.8135 -3.6530 -0.1981 29 1 -0.4850 0.8401 -0.0004 30 1 -0.6771 -2.6404 0.7368 31 1 0.0993 -1.3342 1.6687 32 1 -0.3831 -3.3840 3.0535 33 1 1.3470 -2.9679 3.0000 34 1 -0.0285 -5.0409 1.2309 35 1 0.9812 -5.4051 2.6506 36 1 1.6039 -6.3301 -0.2572 37 1 2.4894 -6.7121 1.2389 38 1 4.1474 -5.1104 -0.3930 39 1 6.0216 -4.8982 -1.4443 40 1 9.4385 -6.8032 -3.9533 41 1 9.9437 -8.2575 -4.6260 42 1 5.7267 -9.1037 -2.3371 43 1 2.7342 -3.5135 -0.7646 44 1 1.0398 -4.0604 -0.8487 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023746615.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:38 Heat of formation + Delta-G solvation = -50.316250 kcal Electronic energy + Delta-G solvation = -26300.328974 eV Core-core repulsion = 22444.949645 eV Total energy + Delta-G solvation = -3855.379329 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.60642 -40.53546 -39.85575 -39.15056 -36.18054 -34.91167 -34.61864 -32.58028 -32.24538 -31.81478 -30.40109 -27.23802 -26.87813 -24.29180 -24.03547 -23.64156 -22.31943 -21.31670 -21.01547 -20.32508 -19.97529 -18.61156 -17.99772 -17.40175 -16.96789 -16.76491 -16.54092 -16.47342 -16.17259 -15.69463 -15.35755 -15.11272 -15.00062 -14.68254 -14.60043 -14.45349 -14.35343 -13.96225 -13.67723 -13.49097 -13.39247 -12.95175 -12.85677 -12.47159 -12.18672 -11.90725 -11.77286 -11.54136 -11.52604 -11.33124 -11.06127 -10.93223 -10.85433 -10.49856 -10.27411 -9.95207 -9.42090 -8.63017 -7.81872 -5.27832 0.34939 0.76910 1.50073 1.52418 1.62071 1.93850 2.16218 2.23320 2.54955 2.56146 2.57533 3.33610 3.65065 3.84389 3.92246 4.03907 4.07977 4.09035 4.11768 4.24664 4.45752 4.62701 4.65737 4.76678 4.84077 4.87752 4.94113 4.99366 5.06396 5.16150 5.29047 5.33929 5.38654 5.45179 5.51047 5.56123 5.62956 5.72075 5.77863 5.82605 6.24513 6.43097 6.43880 6.69439 7.16577 7.19361 7.35864 7.91195 8.44195 9.24826 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014925 B = 0.002745 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.576645 B =10198.030699 C =11826.838437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.057 4.057 3 Si 0.966 3.034 4 H -0.257 1.257 5 H -0.298 1.298 6 H -0.296 1.296 7 C -0.255 4.255 8 H 0.078 0.922 9 N -0.609 5.609 10 C 0.172 3.828 11 C -0.129 4.129 12 C -0.099 4.099 13 C -0.098 4.098 14 H 0.082 0.918 15 C 0.138 3.862 16 N -0.711 5.711 17 C 0.584 3.416 18 O -0.597 6.597 19 C -0.262 4.262 20 C 0.116 3.884 21 N -0.498 5.498 22 H 0.444 0.556 23 C -0.070 4.070 24 C 0.595 3.405 25 N -0.828 5.828 26 O -0.581 6.581 27 C -0.071 4.071 28 C 0.152 3.848 29 H 0.247 0.753 30 H -0.011 1.011 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.412 0.588 39 H 0.226 0.774 40 H 0.415 0.585 41 H 0.417 0.583 42 H 0.130 0.870 43 H 0.064 0.936 44 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.417 -8.384 -2.815 21.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.252 4.252 3 Si 0.795 3.205 4 H -0.181 1.181 5 H -0.225 1.225 6 H -0.223 1.223 7 C -0.385 4.385 8 H 0.096 0.904 9 N -0.332 5.332 10 C 0.046 3.954 11 C -0.168 4.168 12 C -0.137 4.137 13 C -0.118 4.118 14 H 0.101 0.899 15 C 0.014 3.986 16 N -0.362 5.362 17 C 0.374 3.626 18 O -0.479 6.479 19 C -0.272 4.272 20 C -0.028 4.028 21 N -0.094 5.094 22 H 0.287 0.713 23 C -0.182 4.182 24 C 0.381 3.619 25 N -0.393 5.393 26 O -0.461 6.461 27 C -0.097 4.097 28 C 0.027 3.973 29 H 0.056 0.944 30 H 0.008 0.992 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.249 0.751 39 H 0.242 0.758 40 H 0.246 0.754 41 H 0.250 0.750 42 H 0.148 0.852 43 H 0.083 0.917 44 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges 18.831 -9.654 -2.895 21.359 hybrid contribution 0.350 1.715 -0.436 1.804 sum 19.181 -7.939 -3.332 21.025 Atomic orbital electron populations 1.70217 1.06941 1.25583 1.55896 1.25850 0.95951 1.01701 1.01660 0.85221 0.79078 0.79907 0.76317 1.18119 1.22516 1.22347 1.19631 0.93097 0.85636 1.40139 0.90438 1.44334 1.35777 1.02403 1.50693 1.20621 0.87771 0.97677 0.89290 1.21988 1.00929 0.95907 0.97993 1.21351 0.96725 0.96749 0.98915 1.21703 0.99039 0.93284 0.97794 0.89924 1.21248 0.85074 0.96841 0.95478 1.45730 1.24347 1.11638 1.54480 1.17741 0.84174 0.83037 0.77669 1.90743 1.62164 1.31858 1.63111 1.19558 0.99138 0.95792 1.12666 1.23025 0.86055 0.99926 0.93806 1.41577 1.20300 1.07740 1.39817 0.71279 1.19737 1.00952 0.85194 1.12276 1.17089 0.81200 0.85690 0.77930 1.43457 1.23638 1.15173 1.57010 1.90894 1.77407 1.16863 1.60940 1.21061 0.93203 0.99070 0.96391 1.21041 0.97335 0.85571 0.93375 0.94394 0.99246 0.93087 0.91579 0.92557 0.92976 0.90295 0.92925 0.91228 0.75079 0.75794 0.75365 0.74970 0.85158 0.91707 0.98020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.57 11.20 21.65 0.24 -54.32 16 2 C -0.06 -3.03 4.92 84.86 0.42 -2.61 16 3 Si 0.97 42.43 29.59 68.60 2.03 44.46 16 4 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 5 H -0.30 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.30 -13.24 7.11 99.48 0.71 -12.53 16 7 C -0.25 -12.96 9.58 84.03 0.81 -12.15 16 8 H 0.08 3.66 7.89 -2.91 -0.02 3.64 16 9 N -0.61 -28.55 2.99 -699.10 -2.09 -30.64 16 10 C 0.17 8.06 5.30 86.36 0.46 8.52 16 11 C -0.13 -4.55 6.08 30.67 0.19 -4.36 16 12 C -0.10 -2.96 5.17 30.62 0.16 -2.80 16 13 C -0.10 -2.84 2.37 -10.71 -0.03 -2.87 16 14 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 15 C 0.14 3.70 5.07 86.38 0.44 4.14 16 16 N -0.71 -16.86 5.32 -466.41 -2.48 -19.34 16 17 C 0.58 16.58 7.81 86.65 0.68 17.26 16 18 O -0.60 -22.57 16.92 -4.05 -0.07 -22.64 16 19 C -0.26 -5.79 6.13 -20.12 -0.12 -5.91 16 20 C 0.12 1.30 11.43 84.31 0.96 2.27 16 21 N -0.50 -3.87 5.91 -183.35 -1.08 -4.96 16 22 H 0.44 -0.77 8.14 -92.71 -0.75 -1.53 16 23 C -0.07 -1.21 6.99 40.01 0.28 -0.93 16 24 C 0.59 10.62 8.06 86.49 0.70 11.32 16 25 N -0.83 -5.22 8.87 -176.31 -1.56 -6.78 16 26 O -0.58 -16.54 17.69 -4.27 -0.08 -16.61 16 27 C -0.07 -1.74 10.37 22.58 0.23 -1.51 16 28 C 0.15 5.64 5.60 86.36 0.48 6.12 16 29 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 30 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 31 H 0.05 2.73 6.06 -2.39 -0.01 2.71 16 32 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 34 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.41 7.40 6.62 -92.70 -0.61 6.79 16 39 H 0.23 0.72 7.44 -2.91 -0.02 0.70 16 40 H 0.42 -0.65 7.91 -92.71 -0.73 -1.38 16 41 H 0.42 1.84 8.93 -92.70 -0.83 1.02 16 42 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 43 H 0.06 2.16 7.14 -2.39 -0.02 2.14 16 44 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 Total: -1.00 -83.97 364.46 -1.30 -85.27 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -1.85 Total: 9.11 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: 5.65 Total: 16.47 kcal Atomic # 7 Polarization: -109.07 SS G_CDS: -6.98 Total: -116.05 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -0.14 Total: -39.25 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -83.97 -1.30 -85.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023746615.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.951 kcal (2) G-P(sol) polarization free energy of solvation -83.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds