Wall clock time and date at job start Tue Mar 31 2020 12:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86791 * 120.00203 * 2 1 4 4 H 1.48497 * 109.47297 * 90.00114 * 3 2 1 5 5 H 1.48499 * 109.47333 * 209.99905 * 3 2 1 6 6 H 1.48500 * 109.47276 * 330.00148 * 3 2 1 7 7 C 1.38811 * 119.99503 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99612 * 192.28818 * 7 2 1 9 9 N 1.36931 * 120.00107 * 12.29597 * 7 2 1 10 10 C 1.46928 * 120.63387 * 31.61059 * 9 7 2 11 11 C 1.53189 * 108.77792 * 126.36965 * 10 9 7 12 12 C 1.53035 * 109.31525 * 54.63330 * 11 10 9 13 13 C 1.53039 * 109.53982 * 298.63505 * 12 11 10 14 14 C 1.46929 * 120.62778 * 211.32553 * 9 7 2 15 15 H 1.09005 * 109.58110 * 113.84821 * 14 9 7 16 16 C 1.52996 * 109.58854 * 353.42249 * 14 9 7 17 17 N 1.46498 * 109.47235 * 60.29352 * 16 14 9 18 18 C 1.34782 * 119.99890 * 179.97438 * 17 16 14 19 19 O 1.21568 * 120.00137 * 0.02562 * 18 17 16 20 20 C 1.47717 * 119.99784 * 180.02562 * 18 17 16 21 21 C 1.40939 * 125.97458 * 180.02562 * 20 18 17 22 22 C 1.36175 * 107.95385 * 180.08742 * 21 20 18 23 23 N 1.35799 * 107.30981 * 359.64329 * 22 21 20 24 24 N 1.31843 * 125.97425 * 359.69810 * 20 18 17 25 25 C 1.47435 * 108.06717 * 180.66018 * 23 22 21 26 26 C 1.54644 * 102.35230 * 15.25730 * 25 23 22 27 27 O 1.36125 * 140.87749 * 179.13403 * 22 21 20 28 28 H 0.97005 * 119.99522 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.58524 * 246.15388 * 10 9 7 30 30 H 1.09001 * 109.58222 * 6.43375 * 10 9 7 31 31 H 1.09001 * 109.49672 * 174.58952 * 11 10 9 32 32 H 1.09005 * 109.49619 * 294.68501 * 11 10 9 33 33 H 1.08998 * 109.45913 * 58.65566 * 12 11 10 34 34 H 1.09002 * 109.46436 * 178.62971 * 12 11 10 35 35 H 1.09002 * 109.49806 * 181.31121 * 13 12 11 36 36 H 1.08999 * 109.50324 * 301.41368 * 13 12 11 37 37 H 1.08998 * 109.46969 * 180.29898 * 16 14 9 38 38 H 1.08997 * 109.47304 * 300.29525 * 16 14 9 39 39 H 0.97001 * 119.99778 * 0.02562 * 17 16 14 40 40 H 1.08000 * 126.02516 * 0.06280 * 21 20 18 41 41 H 1.09005 * 110.82712 * 133.47289 * 25 23 22 42 42 H 1.08992 * 110.82733 * 256.83874 * 25 23 22 43 43 H 1.09004 * 110.85189 * 93.34875 * 26 25 23 44 44 H 1.09003 * 110.85083 * 216.97922 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 1.4000 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6526 -0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0716 -1.2128 0.1996 9 7 1.3490 -2.3745 -0.2515 10 6 0.1880 -2.4007 -1.1516 11 6 0.4256 -3.4603 -2.2321 12 6 0.7344 -4.8028 -1.5654 13 6 2.0071 -4.6762 -0.7250 14 6 1.7909 -3.6313 0.3683 15 1 1.0278 -3.9847 1.0618 16 6 3.1031 -3.3990 1.1198 17 7 2.8958 -2.3939 2.1653 18 6 3.9206 -2.0270 2.9602 19 8 5.0170 -2.5299 2.8093 20 6 3.7113 -1.0140 4.0147 21 6 4.6888 -0.5390 4.9120 22 6 4.1006 0.3820 5.7246 23 7 2.8013 0.4859 5.3434 24 7 2.5790 -0.3916 4.2770 25 6 2.1516 1.4920 6.2032 26 6 3.3617 2.2099 6.8448 27 8 4.3876 1.2028 6.7718 28 1 -0.4850 0.8401 -0.0004 29 1 -0.7084 -2.6518 -0.5846 30 1 0.0642 -1.4227 -1.6167 31 1 -0.4677 -3.5574 -2.8491 32 1 1.2683 -3.1615 -2.8557 33 1 -0.0981 -5.0890 -0.9228 34 1 0.8799 -5.5640 -2.3319 35 1 2.2393 -5.6387 -0.2692 36 1 2.8349 -4.3658 -1.3626 37 1 3.4318 -4.3335 1.5743 38 1 3.8635 -3.0467 0.4229 39 1 2.0208 -1.9929 2.2859 40 1 5.7222 -0.8507 4.9490 41 1 1.5598 2.1869 5.6074 42 1 1.5344 1.0122 6.9627 43 1 3.6412 3.0910 6.2670 44 1 3.1510 2.4748 7.8810 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024483021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:58 Heat of formation + Delta-G solvation = 57.635702 kcal Electronic energy + Delta-G solvation = -27920.071087 eV Core-core repulsion = 24069.372906 eV Total energy + Delta-G solvation = -3850.698181 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.21294 -39.39781 -38.28123 -37.47509 -34.15969 -33.28008 -33.02807 -30.96568 -29.91320 -29.66570 -28.76085 -26.19833 -25.05551 -23.83553 -22.43443 -22.06735 -21.30888 -20.59683 -19.55569 -19.00990 -17.76421 -17.04885 -16.38042 -16.22690 -15.67273 -15.53624 -15.24620 -14.81209 -14.52634 -14.12002 -13.96440 -13.83762 -13.41190 -13.30788 -13.20623 -12.80888 -12.78260 -12.43458 -12.38156 -12.00336 -11.76175 -11.35676 -11.16858 -10.92226 -10.74779 -10.68426 -10.51599 -10.25832 -10.11357 -9.95802 -9.72387 -9.45945 -9.31032 -9.11261 -8.54692 -8.42908 -8.19959 -6.60191 -5.80014 -3.26112 1.55996 1.91983 2.26639 2.76507 3.35508 3.41666 3.46765 3.71909 3.83987 3.91929 4.37197 4.47598 4.54914 4.77789 5.00017 5.05965 5.26865 5.32043 5.37500 5.48625 5.54536 5.66710 5.68809 5.72927 5.98457 6.00286 6.08637 6.18328 6.32093 6.39068 6.44452 6.53740 6.62685 6.74438 6.76431 6.88834 6.89116 7.00616 7.15530 7.42045 7.59290 7.69823 7.83461 8.28351 8.45420 8.80130 9.21157 9.82257 10.40108 11.27224 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015172 B = 0.004409 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.027501 B = 6348.935688 C = 7430.167918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.014 3.986 3 Si 0.892 3.108 4 H -0.288 1.288 5 H -0.279 1.279 6 H -0.291 1.291 7 C -0.250 4.250 8 H 0.069 0.931 9 N -0.588 5.588 10 C 0.174 3.826 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.032 0.968 16 C 0.133 3.867 17 N -0.674 5.674 18 C 0.593 3.407 19 O -0.547 6.547 20 C 0.060 3.940 21 C -0.214 4.214 22 C 0.223 3.777 23 N -0.415 5.415 24 N -0.198 5.198 25 C 0.098 3.902 26 C 0.042 3.958 27 O -0.282 6.282 28 H 0.252 0.748 29 H 0.017 0.983 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.044 0.956 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.423 0.577 40 H 0.163 0.837 41 H 0.112 0.888 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.074 0.439 10.290 10.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.186 4.186 3 Si 0.722 3.278 4 H -0.215 1.215 5 H -0.205 1.205 6 H -0.217 1.217 7 C -0.380 4.380 8 H 0.086 0.914 9 N -0.312 5.312 10 C 0.048 3.952 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.050 0.950 16 C 0.009 3.991 17 N -0.325 5.325 18 C 0.375 3.625 19 O -0.425 6.425 20 C -0.108 4.108 21 C -0.244 4.244 22 C 0.056 3.944 23 N -0.212 5.212 24 N -0.027 5.027 25 C -0.023 4.023 26 C -0.034 4.034 27 O -0.189 6.189 28 H 0.062 0.938 29 H 0.036 0.964 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.262 0.738 40 H 0.181 0.819 41 H 0.130 0.870 42 H 0.122 0.878 43 H 0.111 0.889 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.532 0.415 10.021 10.146 hybrid contribution 0.556 1.394 0.296 1.530 sum 2.088 1.809 10.317 10.681 Atomic orbital electron populations 1.69994 1.05093 1.25290 1.53807 1.25022 0.95143 0.97955 1.00444 0.86453 0.79383 0.84298 0.77707 1.21476 1.20469 1.21694 1.19148 0.91537 0.83748 1.43555 0.91357 1.44057 1.34302 1.02433 1.50448 1.20762 0.88233 0.97253 0.88929 1.22200 0.99864 0.96704 0.99597 1.21358 0.97484 0.97375 0.98267 1.21869 0.98170 0.98177 0.98485 1.20650 0.93023 0.88677 0.92359 0.95023 1.21393 0.98594 0.90034 0.89087 1.45944 1.13687 1.41085 1.31783 1.16744 0.84816 0.80656 0.80245 1.90747 1.24563 1.55792 1.71350 1.22123 0.91108 0.99102 0.98469 1.20013 1.01583 1.04383 0.98463 1.20755 0.86868 0.96439 0.90379 1.50716 1.09020 1.33970 1.27477 1.77953 1.20988 1.04123 0.99587 1.23200 0.96819 0.89409 0.92912 1.24426 0.83711 0.91260 1.04034 1.87099 1.48203 1.39950 1.43643 0.93759 0.96440 0.89644 0.93589 0.92834 0.92890 0.93732 0.92939 0.92027 0.92192 0.91154 0.73832 0.81929 0.87001 0.87764 0.88922 0.85379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.85 11.16 55.49 0.62 -24.23 16 2 C 0.01 0.37 5.01 -17.43 -0.09 0.28 16 3 Si 0.89 21.94 29.57 -169.99 -5.03 16.91 16 4 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.25 -6.41 6.97 -15.06 -0.10 -6.52 16 8 H 0.07 1.81 5.86 -52.48 -0.31 1.50 16 9 N -0.59 -13.70 2.98 -165.02 -0.49 -14.19 16 10 C 0.17 3.97 5.26 -3.71 -0.02 3.95 16 11 C -0.14 -2.70 6.08 -26.62 -0.16 -2.86 16 12 C -0.11 -1.77 5.89 -26.69 -0.16 -1.93 16 13 C -0.13 -2.15 5.35 -26.83 -0.14 -2.29 16 14 C 0.16 3.15 2.99 -67.82 -0.20 2.94 16 15 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 16 C 0.13 2.57 4.42 -4.04 -0.02 2.55 16 17 N -0.67 -13.94 3.85 -61.29 -0.24 -14.18 16 18 C 0.59 12.36 7.83 -12.39 -0.10 12.27 16 19 O -0.55 -12.17 16.90 5.31 0.09 -12.08 16 20 C 0.06 1.18 7.09 -82.97 -0.59 0.59 16 21 C -0.21 -3.72 10.60 -39.30 -0.42 -4.14 16 22 C 0.22 3.48 8.32 -16.54 -0.14 3.34 16 23 N -0.41 -6.63 5.01 -59.63 -0.30 -6.93 16 24 N -0.20 -3.89 12.39 33.31 0.41 -3.48 16 25 C 0.10 0.95 8.10 -2.67 -0.02 0.93 16 26 C 0.04 0.32 8.08 38.02 0.31 0.63 16 27 O -0.28 -3.50 11.19 -20.14 -0.23 -3.72 16 28 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 2.20 6.17 -51.93 -0.32 1.88 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.07 1.46 7.41 -51.93 -0.38 1.08 16 39 H 0.42 9.38 7.09 -40.82 -0.29 9.09 16 40 H 0.16 2.56 8.06 -52.49 -0.42 2.14 16 41 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.13 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 355.10 15.07 5.35 5.35 Total: -1.00 -32.05 355.10 -8.01 -40.06 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -6.36 Total: 6.75 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: -1.85 Total: 9.73 kcal Atomic # 7 Polarization: -63.01 SS G_CDS: 0.01 Total: -63.00 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.14 Total: -15.80 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.05 -8.01 -40.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024483021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.699 kcal (2) G-P(sol) polarization free energy of solvation -32.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds