Wall clock time and date at job start Tue Mar 31 2020 12:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86791 * 120.00203 * 2 1 4 4 H 1.48497 * 109.47297 * 90.00114 * 3 2 1 5 5 H 1.48499 * 109.47333 * 209.99905 * 3 2 1 6 6 H 1.48500 * 109.47276 * 330.00148 * 3 2 1 7 7 C 1.38811 * 119.99503 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99612 * 192.28818 * 7 2 1 9 9 N 1.36931 * 120.00107 * 12.29597 * 7 2 1 10 10 C 1.46928 * 120.63387 * 31.61059 * 9 7 2 11 11 C 1.53189 * 108.77792 * 126.36965 * 10 9 7 12 12 C 1.53035 * 109.31525 * 54.63330 * 11 10 9 13 13 C 1.53039 * 109.53982 * 298.63505 * 12 11 10 14 14 C 1.46929 * 120.62778 * 211.32553 * 9 7 2 15 15 H 1.09005 * 109.58110 * 113.84821 * 14 9 7 16 16 C 1.52996 * 109.58854 * 353.42249 * 14 9 7 17 17 N 1.46498 * 109.47235 * 60.29352 * 16 14 9 18 18 C 1.34782 * 119.99890 * 179.97438 * 17 16 14 19 19 O 1.21568 * 120.00137 * 0.02562 * 18 17 16 20 20 C 1.47717 * 119.99784 * 180.02562 * 18 17 16 21 21 C 1.40939 * 125.97458 * 180.02562 * 20 18 17 22 22 C 1.36175 * 107.95385 * 180.08742 * 21 20 18 23 23 N 1.35799 * 107.30981 * 359.64329 * 22 21 20 24 24 N 1.31843 * 125.97425 * 359.69810 * 20 18 17 25 25 C 1.47435 * 108.06717 * 180.66018 * 23 22 21 26 26 C 1.54644 * 102.35230 * 15.25730 * 25 23 22 27 27 O 1.36125 * 140.87749 * 179.13403 * 22 21 20 28 28 H 0.97005 * 119.99522 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.58524 * 246.15388 * 10 9 7 30 30 H 1.09001 * 109.58222 * 6.43375 * 10 9 7 31 31 H 1.09001 * 109.49672 * 174.58952 * 11 10 9 32 32 H 1.09005 * 109.49619 * 294.68501 * 11 10 9 33 33 H 1.08998 * 109.45913 * 58.65566 * 12 11 10 34 34 H 1.09002 * 109.46436 * 178.62971 * 12 11 10 35 35 H 1.09002 * 109.49806 * 181.31121 * 13 12 11 36 36 H 1.08999 * 109.50324 * 301.41368 * 13 12 11 37 37 H 1.08998 * 109.46969 * 180.29898 * 16 14 9 38 38 H 1.08997 * 109.47304 * 300.29525 * 16 14 9 39 39 H 0.97001 * 119.99778 * 0.02562 * 17 16 14 40 40 H 1.08000 * 126.02516 * 0.06280 * 21 20 18 41 41 H 1.09005 * 110.82712 * 133.47289 * 25 23 22 42 42 H 1.08992 * 110.82733 * 256.83874 * 25 23 22 43 43 H 1.09004 * 110.85189 * 93.34875 * 26 25 23 44 44 H 1.09003 * 110.85083 * 216.97922 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 1.4000 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6526 -0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0716 -1.2128 0.1996 9 7 1.3490 -2.3745 -0.2515 10 6 0.1880 -2.4007 -1.1516 11 6 0.4256 -3.4603 -2.2321 12 6 0.7344 -4.8028 -1.5654 13 6 2.0071 -4.6762 -0.7250 14 6 1.7909 -3.6313 0.3683 15 1 1.0278 -3.9847 1.0618 16 6 3.1031 -3.3990 1.1198 17 7 2.8958 -2.3939 2.1653 18 6 3.9206 -2.0270 2.9602 19 8 5.0170 -2.5299 2.8093 20 6 3.7113 -1.0140 4.0147 21 6 4.6888 -0.5390 4.9120 22 6 4.1006 0.3820 5.7246 23 7 2.8013 0.4859 5.3434 24 7 2.5790 -0.3916 4.2770 25 6 2.1516 1.4920 6.2032 26 6 3.3617 2.2099 6.8448 27 8 4.3876 1.2028 6.7718 28 1 -0.4850 0.8401 -0.0004 29 1 -0.7084 -2.6518 -0.5846 30 1 0.0642 -1.4227 -1.6167 31 1 -0.4677 -3.5574 -2.8491 32 1 1.2683 -3.1615 -2.8557 33 1 -0.0981 -5.0890 -0.9228 34 1 0.8799 -5.5640 -2.3319 35 1 2.2393 -5.6387 -0.2692 36 1 2.8349 -4.3658 -1.3626 37 1 3.4318 -4.3335 1.5743 38 1 3.8635 -3.0467 0.4229 39 1 2.0208 -1.9929 2.2859 40 1 5.7222 -0.8507 4.9490 41 1 1.5598 2.1869 5.6074 42 1 1.5344 1.0122 6.9627 43 1 3.6412 3.0910 6.2670 44 1 3.1510 2.4748 7.8810 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024483021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:57 Heat of formation + Delta-G solvation = 34.429180 kcal Electronic energy + Delta-G solvation = -27921.077397 eV Core-core repulsion = 24069.372906 eV Total energy + Delta-G solvation = -3851.704492 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.36493 -40.89349 -39.63224 -39.00953 -35.76796 -34.89572 -34.32157 -32.51118 -31.69947 -30.92439 -29.93106 -27.80338 -26.75452 -24.99556 -23.84737 -23.56381 -22.52461 -22.16145 -21.09199 -20.59675 -18.99174 -18.33890 -17.93323 -17.44600 -17.33167 -17.00933 -16.49592 -16.22393 -16.02068 -15.74765 -15.52898 -15.02928 -14.90519 -14.78187 -14.51812 -14.35673 -14.05020 -13.97577 -13.61808 -13.43404 -13.18370 -12.87350 -12.83895 -12.57717 -12.33832 -12.25244 -12.05937 -12.03684 -11.77707 -11.50646 -11.38505 -11.08327 -10.96774 -10.52629 -10.33531 -9.87800 -9.68796 -8.53186 -7.83383 -5.29226 0.18633 0.80429 0.97786 1.35231 1.38390 1.45640 1.71671 2.27463 2.40192 2.48359 3.03250 3.33135 3.42072 3.60255 3.78843 3.83692 3.99934 4.12846 4.22165 4.25175 4.29916 4.42338 4.43468 4.44976 4.57207 4.60683 4.67258 4.73308 4.77193 4.89450 5.02566 5.16137 5.20186 5.25185 5.30912 5.37811 5.49133 5.54658 5.65639 5.75524 5.78984 5.87028 6.27931 6.45451 6.63701 7.14564 7.21349 7.89837 8.42424 9.21363 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015172 B = 0.004409 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.027501 B = 6348.935688 C = 7430.167918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.028 4.028 3 Si 0.934 3.066 4 H -0.295 1.295 5 H -0.282 1.282 6 H -0.290 1.290 7 C -0.233 4.233 8 H 0.059 0.941 9 N -0.602 5.602 10 C 0.178 3.822 11 C -0.135 4.135 12 C -0.103 4.103 13 C -0.121 4.121 14 C 0.159 3.841 15 H 0.031 0.969 16 C 0.135 3.865 17 N -0.677 5.677 18 C 0.592 3.408 19 O -0.567 6.567 20 C 0.039 3.961 21 C -0.236 4.236 22 C 0.237 3.763 23 N -0.415 5.415 24 N -0.236 5.236 25 C 0.082 3.918 26 C 0.044 3.956 27 O -0.284 6.284 28 H 0.246 0.754 29 H -0.001 1.001 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.056 0.944 37 H 0.084 0.916 38 H 0.054 0.946 39 H 0.414 0.586 40 H 0.170 0.830 41 H 0.122 0.878 42 H 0.130 0.870 43 H 0.106 0.894 44 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.269 0.103 11.420 11.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.225 4.225 3 Si 0.765 3.235 4 H -0.223 1.223 5 H -0.208 1.208 6 H -0.217 1.217 7 C -0.363 4.363 8 H 0.076 0.924 9 N -0.326 5.326 10 C 0.053 3.947 11 C -0.174 4.174 12 C -0.140 4.140 13 C -0.161 4.161 14 C 0.053 3.947 15 H 0.049 0.951 16 C 0.012 3.988 17 N -0.326 5.326 18 C 0.376 3.624 19 O -0.446 6.446 20 C -0.127 4.127 21 C -0.266 4.266 22 C 0.068 3.932 23 N -0.213 5.213 24 N -0.066 5.066 25 C -0.037 4.037 26 C -0.030 4.030 27 O -0.191 6.191 28 H 0.056 0.944 29 H 0.017 0.983 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.072 0.928 39 H 0.252 0.748 40 H 0.187 0.813 41 H 0.140 0.860 42 H 0.148 0.852 43 H 0.124 0.876 44 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 1.731 0.072 11.153 11.287 hybrid contribution 0.471 1.571 0.078 1.642 sum 2.202 1.644 11.231 11.563 Atomic orbital electron populations 1.70098 1.05800 1.25071 1.55835 1.25428 0.95610 0.99763 1.01686 0.85780 0.78342 0.82449 0.76932 1.22294 1.20811 1.21654 1.19138 0.91085 0.84721 1.41376 0.92372 1.44251 1.34159 1.03083 1.51150 1.20584 0.87518 0.96969 0.89634 1.22051 1.00480 0.96630 0.98261 1.21346 0.97243 0.96513 0.98907 1.21820 0.98315 0.98472 0.97449 1.20829 0.92797 0.87832 0.93280 0.95134 1.21453 0.98025 0.90664 0.88693 1.45990 1.13235 1.41328 1.32088 1.16958 0.84411 0.80673 0.80390 1.90711 1.25074 1.56709 1.72137 1.21959 0.92080 0.99661 0.99047 1.20117 1.01841 1.05514 0.99118 1.20738 0.86559 0.95739 0.90120 1.51132 1.10048 1.33617 1.26507 1.77800 1.21491 1.05678 1.01664 1.23834 0.98244 0.88789 0.92823 1.24923 0.81112 0.89926 1.07068 1.87128 1.49711 1.40377 1.41871 0.94408 0.98294 0.93140 0.91749 0.93501 0.92516 0.90564 0.89643 0.92529 0.89803 0.92773 0.74812 0.81259 0.85991 0.85165 0.87638 0.80484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.61 11.16 21.65 0.24 -52.37 16 2 C -0.03 -1.55 5.01 84.86 0.42 -1.13 16 3 Si 0.93 46.24 29.57 68.60 2.03 48.27 16 4 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 5 H -0.28 -13.95 7.11 99.48 0.71 -13.25 16 6 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 7 C -0.23 -12.19 6.97 84.03 0.59 -11.60 16 8 H 0.06 3.16 5.86 -2.91 -0.02 3.15 16 9 N -0.60 -28.33 2.98 -676.01 -2.01 -30.34 16 10 C 0.18 8.25 5.26 86.36 0.45 8.70 16 11 C -0.14 -4.87 6.08 30.67 0.19 -4.68 16 12 C -0.10 -3.07 5.89 30.62 0.18 -2.89 16 13 C -0.12 -3.78 5.35 30.53 0.16 -3.62 16 14 C 0.16 6.12 2.99 44.83 0.13 6.26 16 15 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 16 C 0.13 5.20 4.42 86.38 0.38 5.58 16 17 N -0.68 -28.66 3.85 -466.11 -1.79 -30.45 16 18 C 0.59 25.38 7.83 86.75 0.68 26.06 16 19 O -0.57 -25.75 16.90 -3.93 -0.07 -25.81 16 20 C 0.04 1.56 7.09 42.31 0.30 1.85 16 21 C -0.24 -8.27 10.60 22.45 0.24 -8.03 16 22 C 0.24 7.18 8.32 83.60 0.70 7.87 16 23 N -0.41 -12.90 5.01 -453.33 -2.27 -15.17 16 24 N -0.24 -9.45 12.39 -48.51 -0.60 -10.05 16 25 C 0.08 1.38 8.10 86.76 0.70 2.09 16 26 C 0.04 0.51 8.08 72.54 0.59 1.09 16 27 O -0.28 -6.31 11.19 -94.97 -1.06 -7.37 16 28 H 0.25 13.87 8.31 -92.70 -0.77 13.09 16 29 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 30 H 0.05 2.68 6.17 -2.39 -0.01 2.66 16 31 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 38 H 0.05 2.26 7.41 -2.39 -0.02 2.25 16 39 H 0.41 19.03 7.09 -92.71 -0.66 18.37 16 40 H 0.17 5.44 8.06 -2.91 -0.02 5.42 16 41 H 0.12 1.84 8.14 -2.38 -0.02 1.82 16 42 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 44 H 0.18 0.33 8.14 -2.39 -0.02 0.31 16 Total: -1.00 -72.40 355.10 0.54 -71.86 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 0.37 Total: 23.87 kcal Atomic # 6 Polarization: 21.85 SS G_CDS: 5.71 Total: 27.56 kcal Atomic # 7 Polarization: -131.94 SS G_CDS: -6.44 Total: -138.37 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -1.13 Total: -33.18 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -72.40 0.54 -71.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024483021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.289 kcal (2) G-P(sol) polarization free energy of solvation -72.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds