Wall clock time and date at job start Tue Mar 31 2020 13:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32214 * 120.50567 * 2 1 4 4 C 1.31906 * 121.14155 * 179.75981 * 3 2 1 5 5 N 1.31755 * 122.19478 * 0.53152 * 4 3 2 6 6 C 1.32745 * 120.87078 * 359.72965 * 5 4 3 7 7 O 1.35279 * 120.61556 * 179.97438 * 6 5 4 8 8 C 1.39760 * 120.50981 * 180.27352 * 2 1 3 9 9 C 1.47539 * 120.98283 * 0.02562 * 8 2 1 10 10 O 1.21583 * 120.00164 * 94.82750 * 9 8 2 11 11 N 1.34779 * 119.99590 * 274.83692 * 9 8 2 12 12 C 1.46505 * 119.99512 * 184.50660 * 11 9 8 13 13 C 1.53003 * 109.46993 * 174.82679 * 12 11 9 14 14 H 1.08996 * 109.58334 * 53.98922 * 13 12 11 15 15 C 1.53189 * 109.58622 * 293.56478 * 13 12 11 16 16 C 1.53037 * 109.31366 * 185.58043 * 15 13 12 17 17 C 1.53034 * 109.54058 * 61.36379 * 16 15 13 18 18 C 1.53199 * 109.31090 * 298.63533 * 17 16 15 19 19 N 1.46920 * 109.58727 * 174.27482 * 13 12 11 20 20 C 1.36939 * 120.62873 * 353.41608 * 19 13 12 21 21 H 1.07998 * 120.00449 * 33.23424 * 20 19 13 22 22 C 1.38816 * 119.99665 * 213.22879 * 20 19 13 23 23 N 1.31618 * 120.00182 * 8.95723 * 22 20 19 24 24 Si 1.86802 * 119.99625 * 188.95867 * 22 20 19 25 25 H 1.48493 * 109.47494 * 64.99893 * 24 22 20 26 26 H 1.48497 * 109.46992 * 185.00174 * 24 22 20 27 27 H 1.48505 * 109.47187 * 304.99594 * 24 22 20 28 28 H 1.09005 * 109.47369 * 264.38306 * 1 2 3 29 29 H 1.08998 * 109.47369 * 24.38896 * 1 2 3 30 30 H 1.09008 * 109.46900 * 144.38639 * 1 2 3 31 31 H 1.08003 * 118.90634 * 180.24132 * 4 3 2 32 32 H 0.96700 * 114.00454 * 270.02666 * 7 6 5 33 33 H 0.96996 * 120.00512 * 4.49979 * 11 9 8 34 34 H 1.09005 * 109.46880 * 294.82031 * 12 11 9 35 35 H 1.09002 * 109.47449 * 54.82500 * 12 11 9 36 36 H 1.09008 * 109.49973 * 305.52856 * 15 13 12 37 37 H 1.09004 * 109.50096 * 65.62669 * 15 13 12 38 38 H 1.09007 * 109.45943 * 301.33913 * 16 15 13 39 39 H 1.09003 * 109.44755 * 181.38115 * 16 15 13 40 40 H 1.09001 * 109.49746 * 178.68459 * 17 16 15 41 41 H 1.08995 * 109.49746 * 58.58601 * 17 16 15 42 42 H 1.08999 * 109.58498 * 294.85051 * 18 17 16 43 43 H 1.08998 * 109.70305 * 174.49338 * 18 17 16 44 44 H 0.97006 * 119.99864 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4971 1.1538 0.0047 5 7 4.2115 0.0467 -0.0007 6 6 3.6234 -1.1434 -0.0059 7 8 4.3619 -2.2768 -0.0119 8 6 2.2166 -1.2041 -0.0057 9 6 1.5124 -2.5006 -0.0125 10 8 1.3005 -3.0718 -1.0646 11 7 1.1039 -3.0515 1.1477 12 6 0.4934 -4.3833 1.1512 13 6 0.2410 -4.8249 2.5942 14 1 -0.3424 -4.0639 3.1124 15 6 1.5797 -5.0265 3.3111 16 6 1.3251 -5.6005 4.7067 17 6 0.6340 -6.9603 4.5826 18 6 -0.7155 -6.7806 3.8801 19 7 -0.4941 -6.0970 2.5986 20 6 -0.9636 -6.6355 1.4303 21 1 -0.4120 -6.4978 0.5121 22 6 -2.1485 -7.3586 1.4263 23 7 -2.9102 -7.3797 2.4995 24 14 -2.6619 -8.3017 -0.1022 25 1 -1.6864 -9.3904 -0.3632 26 1 -4.0112 -8.8856 0.1064 27 1 -2.6965 -7.3787 -1.2651 28 1 -0.3634 -0.1006 1.0228 29 1 -0.3634 0.9359 -0.4243 30 1 -0.3633 -0.8355 -0.5985 31 1 4.0087 2.1050 0.0085 32 1 4.5762 -2.6019 -0.8970 33 1 1.2141 -2.5664 1.9804 34 1 -0.4525 -4.3508 0.6105 35 1 1.1648 -5.0921 0.6664 36 1 2.1976 -5.7195 2.7399 37 1 2.0929 -4.0689 3.3996 38 1 0.6868 -4.9187 5.2689 39 1 2.2746 -5.7219 5.2280 40 1 0.4740 -7.3791 5.5762 41 1 1.2607 -7.6350 3.9995 42 1 -1.3758 -6.1797 4.5054 43 1 -1.1691 -7.7553 3.7008 44 1 -3.7385 -7.8847 2.4966 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024616730.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:26 Heat of formation + Delta-G solvation = -11.860922 kcal Electronic energy + Delta-G solvation = -27551.059999 eV Core-core repulsion = 23697.348217 eV Total energy + Delta-G solvation = -3853.711781 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.64107 -39.35928 -38.03053 -37.74671 -34.56100 -34.45306 -33.12707 -32.30980 -30.85606 -29.81297 -28.95588 -26.36685 -25.23631 -24.57549 -23.11966 -22.15098 -21.02181 -20.61054 -19.19286 -19.15679 -18.33192 -17.89969 -16.68186 -16.32791 -15.93573 -15.37567 -14.87004 -14.68410 -14.49305 -14.19121 -13.94288 -13.67507 -13.49855 -13.30020 -13.13795 -13.05977 -12.85678 -12.55535 -12.34793 -12.31451 -11.71954 -11.52456 -11.19929 -10.90987 -10.73797 -10.67016 -10.61769 -10.30863 -10.16342 -10.06482 -9.97812 -9.71400 -9.67059 -9.51702 -9.38358 -8.79812 -8.49285 -6.64073 -5.82640 -3.33690 0.29059 0.57047 2.46867 2.94565 3.13054 3.37164 3.38169 3.42791 3.45448 3.64899 3.92568 4.43790 4.53721 4.64908 4.87387 5.01215 5.25589 5.26791 5.32549 5.38970 5.49313 5.58967 5.61388 5.67939 5.89429 5.91202 5.94652 6.12559 6.32363 6.33406 6.45966 6.50889 6.55368 6.66614 6.73026 6.74788 6.88462 6.97605 7.01012 7.38282 7.56536 7.64903 7.66920 7.76984 8.20736 8.43522 9.17306 9.77594 10.35934 11.24799 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015270 B = 0.003661 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.266782 B = 7646.359341 C = 8496.820785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.226 3.774 3 N -0.526 5.526 4 C 0.332 3.668 5 N -0.543 5.543 6 C 0.400 3.600 7 O -0.468 6.468 8 C -0.247 4.247 9 C 0.574 3.426 10 O -0.528 6.528 11 N -0.708 5.708 12 C 0.127 3.873 13 C 0.166 3.834 14 H 0.030 0.970 15 C -0.130 4.130 16 C -0.109 4.109 17 C -0.145 4.145 18 C 0.175 3.825 19 N -0.583 5.583 20 C -0.261 4.261 21 H 0.068 0.932 22 C 0.012 3.988 23 N -0.902 5.902 24 Si 0.902 3.098 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.279 1.279 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.206 0.794 32 H 0.415 0.585 33 H 0.397 0.603 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.045 0.955 38 H 0.052 0.948 39 H 0.043 0.957 40 H 0.047 0.953 41 H 0.053 0.947 42 H 0.018 0.982 43 H 0.088 0.912 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.551 14.183 -1.015 17.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.080 3.920 3 N -0.243 5.243 4 C 0.045 3.955 5 N -0.268 5.268 6 C 0.212 3.788 7 O -0.277 6.277 8 C -0.256 4.256 9 C 0.356 3.644 10 O -0.404 6.404 11 N -0.358 5.358 12 C 0.004 3.996 13 C 0.059 3.941 14 H 0.047 0.953 15 C -0.169 4.169 16 C -0.146 4.146 17 C -0.184 4.184 18 C 0.050 3.950 19 N -0.307 5.307 20 C -0.391 4.391 21 H 0.085 0.915 22 C -0.188 4.188 23 N -0.545 5.545 24 Si 0.731 3.269 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.205 1.205 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.222 0.778 32 H 0.277 0.723 33 H 0.230 0.770 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.036 0.964 43 H 0.106 0.894 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.657 14.439 -1.165 17.983 hybrid contribution -0.379 -1.136 -0.714 1.395 sum 10.278 13.302 -1.879 16.915 Atomic orbital electron populations 1.20973 0.86725 1.05188 1.04633 1.21874 0.97863 0.85984 0.86251 1.68311 1.10161 1.29440 1.16352 1.24962 0.86305 0.96101 0.88140 1.68064 1.42658 0.98676 1.17447 1.19381 0.85536 0.85920 0.87962 1.84627 1.72462 1.35935 1.34673 1.21896 0.95113 0.97181 1.11391 1.17457 0.78790 0.83522 0.84609 1.90850 1.56140 1.62612 1.30833 1.46087 1.61048 1.20093 1.08525 1.21711 0.98681 0.80342 0.98822 1.20540 0.91715 0.90114 0.91728 0.95295 1.22076 0.98620 0.99330 0.96912 1.21380 0.99003 0.97878 0.96379 1.22208 1.00740 0.95949 0.99496 1.20784 0.90589 0.98758 0.84868 1.43899 1.64233 1.18339 1.04262 1.19097 1.02058 1.30056 0.87867 0.91488 1.25198 0.95383 1.01103 0.97098 1.69963 1.13071 1.43391 1.28062 0.86381 0.77517 0.80056 0.82924 1.20958 1.21599 1.20538 0.88603 0.88964 0.89251 0.77815 0.72334 0.76957 0.89745 0.90984 0.92153 0.93603 0.92939 0.93821 0.93477 0.92805 0.96419 0.89427 0.93492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 9.75 36.01 0.35 -0.79 16 2 C 0.23 2.58 6.86 -81.86 -0.56 2.02 16 3 N -0.53 -5.66 10.36 -10.52 -0.11 -5.77 16 4 C 0.33 3.17 12.27 -92.09 -1.13 2.04 16 5 N -0.54 -6.23 10.45 -14.32 -0.15 -6.38 16 6 C 0.40 4.92 7.85 -16.18 -0.13 4.79 16 7 O -0.47 -5.39 13.10 -17.53 -0.23 -5.62 16 8 C -0.25 -3.15 5.67 -104.56 -0.59 -3.74 16 9 C 0.57 8.71 5.61 -12.47 -0.07 8.64 16 10 O -0.53 -9.92 17.11 5.29 0.09 -9.83 16 11 N -0.71 -10.41 5.29 -61.34 -0.32 -10.73 16 12 C 0.13 2.33 3.85 -4.04 -0.02 2.32 16 13 C 0.17 3.20 2.97 -67.60 -0.20 3.00 16 14 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 15 C -0.13 -2.18 5.19 -26.61 -0.14 -2.31 16 16 C -0.11 -1.79 5.88 -26.69 -0.16 -1.95 16 17 C -0.14 -2.71 6.08 -26.61 -0.16 -2.87 16 18 C 0.18 4.03 5.24 -3.71 -0.02 4.01 16 19 N -0.58 -13.77 2.98 -164.78 -0.49 -14.26 16 20 C -0.26 -6.80 8.39 -15.06 -0.13 -6.93 16 21 H 0.07 1.73 6.43 -52.49 -0.34 1.40 16 22 C 0.01 0.31 5.08 -17.43 -0.09 0.23 16 23 N -0.90 -25.26 11.09 55.49 0.62 -24.64 16 24 Si 0.90 21.39 29.56 -169.99 -5.03 16.36 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.09 0.98 7.38 -51.92 -0.38 0.59 16 31 H 0.21 1.12 8.06 -52.48 -0.42 0.69 16 32 H 0.42 3.07 9.06 45.56 0.41 3.48 16 33 H 0.40 4.97 7.96 -40.82 -0.32 4.65 16 34 H 0.08 1.78 7.32 -51.93 -0.38 1.40 16 35 H 0.07 1.44 7.74 -51.93 -0.40 1.04 16 36 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 37 H 0.05 0.66 7.56 -51.93 -0.39 0.27 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.09 2.27 6.19 -51.93 -0.32 1.95 16 44 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 361.23 15.07 5.44 5.44 Total: -1.00 -32.04 361.23 -8.71 -40.74 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -5.49 Total: 6.23 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: -3.04 Total: 8.46 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: -0.46 Total: -61.78 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.14 Total: -15.45 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.04 -8.71 -40.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024616730.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.884 kcal (2) G-P(sol) polarization free energy of solvation -32.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds