Wall clock time and date at job start Tue Mar 31 2020 13:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32214 * 120.50567 * 2 1 4 4 C 1.31906 * 121.14155 * 179.75981 * 3 2 1 5 5 N 1.31755 * 122.19478 * 0.53152 * 4 3 2 6 6 C 1.32745 * 120.87078 * 359.72965 * 5 4 3 7 7 O 1.35279 * 120.61556 * 179.97438 * 6 5 4 8 8 C 1.39760 * 120.50981 * 180.27352 * 2 1 3 9 9 C 1.47539 * 120.98283 * 0.02562 * 8 2 1 10 10 O 1.21583 * 120.00164 * 94.82750 * 9 8 2 11 11 N 1.34779 * 119.99590 * 274.83692 * 9 8 2 12 12 C 1.46505 * 119.99512 * 184.50660 * 11 9 8 13 13 C 1.53003 * 109.46993 * 174.82679 * 12 11 9 14 14 H 1.08996 * 109.58334 * 53.98922 * 13 12 11 15 15 C 1.53189 * 109.58622 * 293.56478 * 13 12 11 16 16 C 1.53037 * 109.31366 * 185.58043 * 15 13 12 17 17 C 1.53034 * 109.54058 * 61.36379 * 16 15 13 18 18 C 1.53199 * 109.31090 * 298.63533 * 17 16 15 19 19 N 1.46920 * 109.58727 * 174.27482 * 13 12 11 20 20 C 1.36939 * 120.62873 * 353.41608 * 19 13 12 21 21 H 1.07998 * 120.00449 * 33.23424 * 20 19 13 22 22 C 1.38816 * 119.99665 * 213.22879 * 20 19 13 23 23 N 1.31618 * 120.00182 * 8.95723 * 22 20 19 24 24 Si 1.86802 * 119.99625 * 188.95867 * 22 20 19 25 25 H 1.48493 * 109.47494 * 64.99893 * 24 22 20 26 26 H 1.48497 * 109.46992 * 185.00174 * 24 22 20 27 27 H 1.48505 * 109.47187 * 304.99594 * 24 22 20 28 28 H 1.09005 * 109.47369 * 264.38306 * 1 2 3 29 29 H 1.08998 * 109.47369 * 24.38896 * 1 2 3 30 30 H 1.09008 * 109.46900 * 144.38639 * 1 2 3 31 31 H 1.08003 * 118.90634 * 180.24132 * 4 3 2 32 32 H 0.96700 * 114.00454 * 270.02666 * 7 6 5 33 33 H 0.96996 * 120.00512 * 4.49979 * 11 9 8 34 34 H 1.09005 * 109.46880 * 294.82031 * 12 11 9 35 35 H 1.09002 * 109.47449 * 54.82500 * 12 11 9 36 36 H 1.09008 * 109.49973 * 305.52856 * 15 13 12 37 37 H 1.09004 * 109.50096 * 65.62669 * 15 13 12 38 38 H 1.09007 * 109.45943 * 301.33913 * 16 15 13 39 39 H 1.09003 * 109.44755 * 181.38115 * 16 15 13 40 40 H 1.09001 * 109.49746 * 178.68459 * 17 16 15 41 41 H 1.08995 * 109.49746 * 58.58601 * 17 16 15 42 42 H 1.08999 * 109.58498 * 294.85051 * 18 17 16 43 43 H 1.08998 * 109.70305 * 174.49338 * 18 17 16 44 44 H 0.97006 * 119.99864 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4971 1.1538 0.0047 5 7 4.2115 0.0467 -0.0007 6 6 3.6234 -1.1434 -0.0059 7 8 4.3619 -2.2768 -0.0119 8 6 2.2166 -1.2041 -0.0057 9 6 1.5124 -2.5006 -0.0125 10 8 1.3005 -3.0718 -1.0646 11 7 1.1039 -3.0515 1.1477 12 6 0.4934 -4.3833 1.1512 13 6 0.2410 -4.8249 2.5942 14 1 -0.3424 -4.0639 3.1124 15 6 1.5797 -5.0265 3.3111 16 6 1.3251 -5.6005 4.7067 17 6 0.6340 -6.9603 4.5826 18 6 -0.7155 -6.7806 3.8801 19 7 -0.4941 -6.0970 2.5986 20 6 -0.9636 -6.6355 1.4303 21 1 -0.4120 -6.4978 0.5121 22 6 -2.1485 -7.3586 1.4263 23 7 -2.9102 -7.3797 2.4995 24 14 -2.6619 -8.3017 -0.1022 25 1 -1.6864 -9.3904 -0.3632 26 1 -4.0112 -8.8856 0.1064 27 1 -2.6965 -7.3787 -1.2651 28 1 -0.3634 -0.1006 1.0228 29 1 -0.3634 0.9359 -0.4243 30 1 -0.3633 -0.8355 -0.5985 31 1 4.0087 2.1050 0.0085 32 1 4.5762 -2.6019 -0.8970 33 1 1.2141 -2.5664 1.9804 34 1 -0.4525 -4.3508 0.6105 35 1 1.1648 -5.0921 0.6664 36 1 2.1976 -5.7195 2.7399 37 1 2.0929 -4.0689 3.3996 38 1 0.6868 -4.9187 5.2689 39 1 2.2746 -5.7219 5.2280 40 1 0.4740 -7.3791 5.5762 41 1 1.2607 -7.6350 3.9995 42 1 -1.3758 -6.1797 4.5054 43 1 -1.1691 -7.7553 3.7008 44 1 -3.7385 -7.8847 2.4966 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024616730.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:26 Heat of formation + Delta-G solvation = -36.735568 kcal Electronic energy + Delta-G solvation = -27552.138644 eV Core-core repulsion = 23697.348217 eV Total energy + Delta-G solvation = -3854.790427 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.54341 -40.64380 -39.34929 -38.86305 -35.98484 -35.34335 -34.93144 -33.31557 -32.40528 -31.50345 -29.83286 -27.76515 -26.92325 -25.76928 -23.97301 -23.83617 -22.43735 -21.99012 -20.76759 -20.03471 -19.27430 -19.16291 -18.18718 -17.49555 -17.26885 -16.69736 -16.30024 -15.98978 -15.77875 -15.50959 -15.32978 -15.01727 -14.88613 -14.51138 -14.43134 -14.23245 -14.01317 -13.90458 -13.73339 -13.36827 -13.14642 -12.89862 -12.76071 -12.51114 -12.47097 -12.43712 -12.02167 -11.82500 -11.56620 -11.49860 -11.26485 -11.11098 -11.02629 -10.68218 -10.55015 -10.52597 -10.18146 -8.57932 -7.85876 -5.38199 -0.57184 -0.29252 1.27222 1.46762 1.46954 1.53574 1.94169 2.12295 2.47707 2.51056 2.88026 3.11078 3.30039 3.41708 3.70577 3.76032 3.93376 4.07615 4.12152 4.19247 4.20407 4.36733 4.47405 4.52995 4.59943 4.60947 4.78124 4.89052 4.91434 5.02854 5.08496 5.15738 5.16387 5.26514 5.27768 5.39646 5.45026 5.61722 5.64171 5.69876 5.82643 6.27330 6.34331 6.43552 6.83077 6.99690 7.17674 7.85438 8.38079 9.18913 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015270 B = 0.003661 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.266782 B = 7646.359341 C = 8496.820785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.230 3.770 3 N -0.531 5.531 4 C 0.340 3.660 5 N -0.554 5.554 6 C 0.401 3.599 7 O -0.479 6.479 8 C -0.264 4.264 9 C 0.583 3.417 10 O -0.569 6.569 11 N -0.695 5.695 12 C 0.146 3.854 13 C 0.165 3.835 14 H 0.033 0.967 15 C -0.121 4.121 16 C -0.105 4.105 17 C -0.135 4.135 18 C 0.180 3.820 19 N -0.601 5.601 20 C -0.260 4.260 21 H 0.064 0.936 22 C -0.039 4.039 23 N -0.930 5.930 24 Si 0.956 3.044 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.279 1.279 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.246 0.754 32 H 0.430 0.570 33 H 0.411 0.589 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.049 0.951 37 H 0.078 0.922 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.045 0.955 42 H -0.001 1.001 43 H 0.051 0.949 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.496 16.273 -0.407 20.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.084 3.916 3 N -0.247 5.247 4 C 0.054 3.946 5 N -0.279 5.279 6 C 0.213 3.787 7 O -0.290 6.290 8 C -0.273 4.273 9 C 0.367 3.633 10 O -0.448 6.448 11 N -0.346 5.346 12 C 0.023 3.977 13 C 0.059 3.941 14 H 0.050 0.950 15 C -0.160 4.160 16 C -0.142 4.142 17 C -0.174 4.174 18 C 0.054 3.946 19 N -0.326 5.326 20 C -0.390 4.390 21 H 0.081 0.919 22 C -0.235 4.235 23 N -0.575 5.575 24 Si 0.784 3.216 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.205 1.205 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.090 0.910 31 H 0.262 0.738 32 H 0.294 0.706 33 H 0.247 0.753 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.017 0.983 43 H 0.070 0.930 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 12.642 16.562 -0.545 20.843 hybrid contribution -0.922 -1.687 -0.912 2.128 sum 11.720 14.875 -1.457 18.993 Atomic orbital electron populations 1.21021 0.85869 1.05320 1.05262 1.22093 0.98537 0.85758 0.85225 1.68432 1.10747 1.28675 1.16869 1.25846 0.86060 0.97021 0.85629 1.68196 1.42752 0.98701 1.18266 1.19476 0.85349 0.86470 0.87400 1.84573 1.72332 1.35970 1.36166 1.21625 0.95337 0.96021 1.14360 1.17744 0.77830 0.83974 0.83716 1.90827 1.57647 1.64031 1.32266 1.45839 1.60563 1.18789 1.09390 1.21208 0.96887 0.81827 0.97816 1.20690 0.92699 0.88281 0.92456 0.94989 1.21971 0.96591 1.00819 0.96607 1.21373 1.00298 0.96179 0.96364 1.22058 0.97986 0.97710 0.99690 1.20601 0.92653 0.96461 0.84863 1.44125 1.64568 1.20199 1.03697 1.19300 1.01669 1.29333 0.88682 0.91879 1.25809 0.95785 1.02561 0.99347 1.70105 1.13318 1.44568 1.29542 0.85522 0.76921 0.78904 0.80213 1.20631 1.21795 1.20456 0.87262 0.87333 0.90967 0.73811 0.70562 0.75264 0.92982 0.92769 0.93213 0.90388 0.92231 0.90748 0.91519 0.93575 0.98256 0.93030 0.94110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.11 9.75 71.24 0.69 -1.41 16 2 C 0.23 4.84 6.86 42.87 0.29 5.14 16 3 N -0.53 -9.98 10.36 -187.21 -1.94 -11.91 16 4 C 0.34 5.42 12.27 180.86 2.22 7.64 16 5 N -0.55 -11.30 10.45 -312.04 -3.26 -14.56 16 6 C 0.40 9.19 7.85 85.19 0.67 9.86 16 7 O -0.48 -10.36 13.10 -85.64 -1.12 -11.48 16 8 C -0.26 -6.41 5.67 -19.83 -0.11 -6.53 16 9 C 0.58 17.53 5.61 86.70 0.49 18.01 16 10 O -0.57 -21.79 17.11 -3.98 -0.07 -21.86 16 11 N -0.70 -19.99 5.29 -466.25 -2.46 -22.45 16 12 C 0.15 5.45 3.85 86.38 0.33 5.79 16 13 C 0.17 6.28 2.97 44.98 0.13 6.41 16 14 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 15 C -0.12 -3.76 5.19 30.67 0.16 -3.61 16 16 C -0.10 -3.13 5.88 30.62 0.18 -2.95 16 17 C -0.14 -4.90 6.08 30.67 0.19 -4.71 16 18 C 0.18 8.41 5.24 86.37 0.45 8.86 16 19 N -0.60 -28.86 2.98 -675.24 -2.01 -30.87 16 20 C -0.26 -13.89 8.39 84.03 0.71 -13.19 16 21 H 0.06 3.38 6.43 -2.91 -0.02 3.36 16 22 C -0.04 -2.14 5.08 84.86 0.43 -1.71 16 23 N -0.93 -53.91 11.09 21.65 0.24 -53.67 16 24 Si 0.96 45.14 29.56 68.60 2.03 47.17 16 25 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 26 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 27 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 28 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 29 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 1.56 7.38 -2.38 -0.02 1.55 16 31 H 0.25 1.62 8.06 -2.91 -0.02 1.59 16 32 H 0.43 5.93 9.06 -74.06 -0.67 5.26 16 33 H 0.41 9.54 7.96 -92.71 -0.74 8.80 16 34 H 0.05 2.28 7.32 -2.38 -0.02 2.26 16 35 H 0.05 2.21 7.74 -2.39 -0.02 2.19 16 36 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.08 1.96 7.56 -2.38 -0.02 1.94 16 38 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 39 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 43 H 0.05 2.77 6.19 -2.39 -0.01 2.76 16 44 H 0.25 14.14 8.31 -92.70 -0.77 13.37 16 Total: -1.00 -71.05 361.23 -2.13 -73.18 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -0.36 Total: 18.86 kcal Atomic # 6 Polarization: 20.76 SS G_CDS: 6.83 Total: 27.59 kcal Atomic # 7 Polarization: -124.03 SS G_CDS: -9.43 Total: -133.46 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -1.19 Total: -33.33 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -71.05 -2.13 -73.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024616730.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.442 kcal (2) G-P(sol) polarization free energy of solvation -71.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds