Wall clock time and date at job start Tue Mar 31 2020 12:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86793 * 119.99955 * 2 1 4 4 H 1.48503 * 109.47068 * 240.00375 * 3 2 1 5 5 H 1.48499 * 109.47315 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47459 * 120.00154 * 3 2 1 7 7 C 1.38811 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99620 * 194.19292 * 7 2 1 9 9 N 1.36937 * 120.00212 * 14.19287 * 7 2 1 10 10 C 1.46926 * 120.62839 * 31.04020 * 9 7 2 11 11 C 1.53192 * 108.77557 * 126.37147 * 10 9 7 12 12 C 1.53041 * 109.31410 * 54.63243 * 11 10 9 13 13 C 1.53037 * 109.53761 * 298.63762 * 12 11 10 14 14 C 1.46919 * 120.63023 * 211.01916 * 9 7 2 15 15 H 1.09002 * 109.58837 * 113.70274 * 14 9 7 16 16 C 1.52992 * 109.58901 * 353.41737 * 14 9 7 17 17 N 1.46501 * 109.47161 * 60.18648 * 16 14 9 18 18 C 1.34776 * 119.99634 * 180.02562 * 17 16 14 19 19 O 1.21614 * 120.00744 * 359.97438 * 18 17 16 20 20 C 1.47302 * 119.99590 * 179.97438 * 18 17 16 21 21 C 1.37931 * 125.90012 * 180.02562 * 20 18 17 22 22 C 1.39439 * 107.46222 * 180.02562 * 21 20 18 23 23 C 1.37938 * 107.46060 * 0.02562 * 22 21 20 24 24 C 1.47297 * 125.90088 * 180.02562 * 23 22 21 25 25 N 1.34770 * 119.99947 * 179.97438 * 24 23 22 26 26 O 1.21618 * 119.99951 * 359.97438 * 24 23 22 27 27 N 1.36754 * 125.89813 * 359.71652 * 20 18 17 28 28 H 0.96993 * 125.66323 * 359.97438 * 27 20 18 29 29 H 0.96997 * 120.00176 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.58556 * 246.15405 * 10 9 7 31 31 H 1.09004 * 109.59029 * 6.44007 * 10 9 7 32 32 H 1.08998 * 109.49985 * 174.58502 * 11 10 9 33 33 H 1.09007 * 109.49612 * 294.68339 * 11 10 9 34 34 H 1.09003 * 109.46002 * 58.65302 * 12 11 10 35 35 H 1.08997 * 109.45892 * 178.63081 * 12 11 10 36 36 H 1.09004 * 109.50150 * 301.41073 * 13 12 11 37 37 H 1.09003 * 109.49838 * 181.31470 * 13 12 11 38 38 H 1.09007 * 109.47533 * 300.18410 * 16 14 9 39 39 H 1.08998 * 109.47614 * 180.18616 * 16 14 9 40 40 H 0.96994 * 120.00164 * 359.97438 * 17 16 14 41 41 H 1.07999 * 126.26855 * 359.97438 * 21 20 18 42 42 H 1.07996 * 126.27346 * 179.97438 * 22 21 20 43 43 H 0.96992 * 120.00396 * 0.02562 * 25 24 23 44 44 H 0.97005 * 119.99991 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0655 -1.2165 0.2288 9 7 1.3569 -2.3698 -0.2918 10 6 0.2144 -2.3780 -1.2156 11 6 0.4762 -3.4129 -2.3144 12 6 0.7744 -4.7693 -1.6715 13 6 2.0295 -4.6591 -0.8029 14 6 1.7854 -3.6383 0.3131 15 1 1.0075 -4.0050 0.9828 16 6 3.0789 -3.4200 1.1005 17 7 2.8458 -2.4343 2.1589 18 6 3.8511 -2.0816 2.9844 19 8 4.9516 -2.5818 2.8510 20 6 3.6169 -1.0900 4.0482 21 6 4.5533 -0.6417 4.9564 22 6 3.9225 0.2862 5.7843 23 6 2.6114 0.3884 5.3679 24 6 1.5815 1.2573 5.9627 25 7 0.3317 1.2635 5.4583 26 8 1.8589 1.9692 6.9089 27 7 2.4351 -0.4505 4.3023 28 1 1.6083 -0.5740 3.8106 29 1 -0.4850 0.8400 0.0004 30 1 -0.6927 -2.6432 -0.6725 31 1 0.0978 -1.3902 -1.6614 32 1 -0.4043 -3.4979 -2.9513 33 1 1.3306 -3.0987 -2.9139 34 1 -0.0703 -5.0713 -1.0523 35 1 0.9371 -5.5130 -2.4516 36 1 2.8694 -4.3332 -1.4166 37 1 2.2547 -5.6311 -0.3639 38 1 3.8560 -3.0551 0.4288 39 1 3.3969 -4.3628 1.5456 40 1 1.9683 -2.0350 2.2651 41 1 5.5857 -0.9531 5.0160 42 1 4.3769 0.8255 6.6022 43 1 0.1103 0.6955 4.7039 44 1 -0.3465 1.8360 5.8498 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024652533.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:23 Heat of formation + Delta-G solvation = -16.859992 kcal Electronic energy + Delta-G solvation = -27945.897692 eV Core-core repulsion = 24091.969135 eV Total energy + Delta-G solvation = -3853.928557 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.38205 -39.29706 -38.60394 -37.67810 -34.40526 -33.86374 -33.23587 -31.38522 -30.68248 -30.08421 -29.36746 -26.25333 -25.10065 -23.60798 -22.29583 -21.45605 -20.83070 -20.19694 -19.83687 -19.33242 -18.79643 -17.23764 -16.85617 -16.33132 -15.80951 -15.41376 -15.21079 -14.55106 -14.46454 -14.16297 -14.00935 -13.91163 -13.61248 -13.46900 -13.24615 -12.96031 -12.62481 -12.60321 -12.51620 -12.15926 -11.87025 -11.34448 -11.08783 -10.91247 -10.70056 -10.43442 -10.40978 -10.28520 -10.13052 -9.87178 -9.83177 -9.62114 -9.46833 -9.02365 -8.78553 -8.52392 -8.15486 -6.84153 -6.02682 -3.49733 1.16038 2.31630 2.93757 3.21401 3.27536 3.33789 3.34540 3.39696 3.54009 3.71166 4.26873 4.83676 5.04734 5.11533 5.14979 5.33411 5.35729 5.38868 5.52946 5.56947 5.83759 5.90442 5.97062 6.02087 6.13803 6.18317 6.25986 6.29078 6.48313 6.51189 6.58429 6.62119 6.65455 6.72679 6.82013 6.86470 6.94305 7.11032 7.24423 7.32479 7.50490 7.61139 7.99578 8.08322 8.22310 8.57025 8.98088 9.59593 10.18014 11.02708 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013024 B = 0.004766 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.345173 B = 5874.005398 C = 6874.095811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.009 3.991 3 Si 0.886 3.114 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.253 4.253 8 H 0.070 0.930 9 N -0.588 5.588 10 C 0.173 3.827 11 C -0.145 4.145 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.032 0.968 16 C 0.134 3.866 17 N -0.691 5.691 18 C 0.576 3.424 19 O -0.543 6.543 20 C 0.009 3.991 21 C -0.136 4.136 22 C -0.119 4.119 23 C -0.034 4.034 24 C 0.596 3.404 25 N -0.852 5.852 26 O -0.534 6.534 27 N -0.514 5.514 28 H 0.422 0.578 29 H 0.255 0.745 30 H 0.018 0.982 31 H 0.084 0.916 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.409 0.591 41 H 0.155 0.845 42 H 0.153 0.847 43 H 0.401 0.599 44 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.939 -4.556 4.678 6.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.191 4.191 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.383 4.383 8 H 0.087 0.913 9 N -0.313 5.313 10 C 0.048 3.952 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.050 0.950 16 C 0.010 3.990 17 N -0.341 5.341 18 C 0.362 3.638 19 O -0.421 6.421 20 C -0.110 4.110 21 C -0.162 4.162 22 C -0.145 4.145 23 C -0.151 4.151 24 C 0.382 3.618 25 N -0.416 5.416 26 O -0.411 6.411 27 N -0.111 5.111 28 H 0.261 0.739 29 H 0.065 0.935 30 H 0.037 0.963 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.246 0.754 41 H 0.172 0.828 42 H 0.171 0.829 43 H 0.230 0.770 44 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -0.102 -4.396 5.084 6.722 hybrid contribution -0.907 1.111 -0.736 1.612 sum -1.010 -3.286 4.348 5.543 Atomic orbital electron populations 1.70006 1.05006 1.25677 1.53540 1.25046 0.95189 0.97967 1.00861 0.86616 0.79246 0.83698 0.78866 1.20781 1.21564 1.20583 1.19203 0.92118 0.84134 1.42809 0.91268 1.44078 1.36035 1.01915 1.49236 1.20764 0.88400 0.97579 0.88469 1.22192 1.00050 0.96538 0.99601 1.21359 0.97527 0.97391 0.98224 1.21936 0.98303 0.98230 0.98238 1.20745 0.93108 0.88573 0.92266 0.95004 1.21364 0.98595 0.90404 0.88605 1.45917 1.13684 1.43176 1.31292 1.17168 0.84965 0.81057 0.80648 1.90778 1.23655 1.55263 1.72375 1.20842 0.86709 1.01656 1.01774 1.21225 0.99478 0.99528 0.95922 1.21221 0.91211 1.00563 1.01533 1.20426 0.97176 1.01823 0.95709 1.17175 0.81466 0.80893 0.82290 1.43749 1.12105 1.48072 1.37660 1.90847 1.80612 1.41871 1.27722 1.42048 1.11905 1.32044 1.25137 0.73911 0.93496 0.96344 0.89747 0.93490 0.92793 0.92877 0.93625 0.91977 0.92913 0.91176 0.92174 0.75412 0.82775 0.82904 0.77031 0.76075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.96 11.24 55.49 0.62 -21.34 16 2 C 0.01 0.21 4.96 -17.43 -0.09 0.12 16 3 Si 0.89 19.95 29.58 -169.99 -5.03 14.92 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.25 -5.78 6.97 -15.06 -0.10 -5.89 16 8 H 0.07 1.66 5.86 -52.49 -0.31 1.35 16 9 N -0.59 -12.22 2.97 -164.78 -0.49 -12.71 16 10 C 0.17 3.60 5.27 -3.71 -0.02 3.58 16 11 C -0.14 -2.49 6.08 -26.61 -0.16 -2.65 16 12 C -0.11 -1.62 5.88 -26.69 -0.16 -1.78 16 13 C -0.13 -1.96 5.37 -26.61 -0.14 -2.10 16 14 C 0.16 2.79 3.01 -67.60 -0.20 2.59 16 15 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 16 C 0.13 2.31 4.43 -4.05 -0.02 2.29 16 17 N -0.69 -11.96 3.84 -61.42 -0.24 -12.20 16 18 C 0.58 10.41 7.81 -12.58 -0.10 10.31 16 19 O -0.54 -11.13 16.87 5.26 0.09 -11.04 16 20 C 0.01 0.15 7.04 -82.10 -0.58 -0.43 16 21 C -0.14 -2.06 10.60 -39.25 -0.42 -2.48 16 22 C -0.12 -1.72 10.60 -39.24 -0.42 -2.14 16 23 C -0.03 -0.50 7.04 -82.10 -0.58 -1.08 16 24 C 0.60 8.50 8.08 -12.58 -0.10 8.40 16 25 N -0.85 -9.05 8.87 30.40 0.27 -8.78 16 26 O -0.53 -9.19 17.71 5.26 0.09 -9.10 16 27 N -0.51 -7.33 5.90 -5.89 -0.03 -7.37 16 28 H 0.42 5.42 7.34 -40.82 -0.30 5.12 16 29 H 0.25 6.21 8.31 -40.82 -0.34 5.87 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 2.01 6.19 -51.93 -0.32 1.69 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 1.34 7.42 -51.92 -0.39 0.95 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.41 7.08 6.49 -40.82 -0.26 6.82 16 41 H 0.15 2.14 8.06 -52.49 -0.42 1.72 16 42 H 0.15 1.97 8.06 -52.49 -0.42 1.55 16 43 H 0.40 3.72 7.93 -40.82 -0.32 3.39 16 44 H 0.41 3.60 8.93 -40.82 -0.36 3.24 16 LS Contribution 359.30 15.07 5.41 5.41 Total: -1.00 -28.80 359.30 -8.43 -37.23 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: -6.05 Total: 16.21 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: -3.08 Total: 8.76 kcal Atomic # 7 Polarization: -62.53 SS G_CDS: 0.13 Total: -62.40 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: 0.18 Total: -20.14 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.03 Total: 14.92 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.80 -8.43 -37.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024652533.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.373 kcal (2) G-P(sol) polarization free energy of solvation -28.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds