Wall clock time and date at job start Tue Mar 31 2020 12:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86793 * 119.99955 * 2 1 4 4 H 1.48503 * 109.47068 * 240.00375 * 3 2 1 5 5 H 1.48499 * 109.47315 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47459 * 120.00154 * 3 2 1 7 7 C 1.38811 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99620 * 194.19292 * 7 2 1 9 9 N 1.36937 * 120.00212 * 14.19287 * 7 2 1 10 10 C 1.46926 * 120.62839 * 31.04020 * 9 7 2 11 11 C 1.53192 * 108.77557 * 126.37147 * 10 9 7 12 12 C 1.53041 * 109.31410 * 54.63243 * 11 10 9 13 13 C 1.53037 * 109.53761 * 298.63762 * 12 11 10 14 14 C 1.46919 * 120.63023 * 211.01916 * 9 7 2 15 15 H 1.09002 * 109.58837 * 113.70274 * 14 9 7 16 16 C 1.52992 * 109.58901 * 353.41737 * 14 9 7 17 17 N 1.46501 * 109.47161 * 60.18648 * 16 14 9 18 18 C 1.34776 * 119.99634 * 180.02562 * 17 16 14 19 19 O 1.21614 * 120.00744 * 359.97438 * 18 17 16 20 20 C 1.47302 * 119.99590 * 179.97438 * 18 17 16 21 21 C 1.37931 * 125.90012 * 180.02562 * 20 18 17 22 22 C 1.39439 * 107.46222 * 180.02562 * 21 20 18 23 23 C 1.37938 * 107.46060 * 0.02562 * 22 21 20 24 24 C 1.47297 * 125.90088 * 180.02562 * 23 22 21 25 25 N 1.34770 * 119.99947 * 179.97438 * 24 23 22 26 26 O 1.21618 * 119.99951 * 359.97438 * 24 23 22 27 27 N 1.36754 * 125.89813 * 359.71652 * 20 18 17 28 28 H 0.96993 * 125.66323 * 359.97438 * 27 20 18 29 29 H 0.96997 * 120.00176 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.58556 * 246.15405 * 10 9 7 31 31 H 1.09004 * 109.59029 * 6.44007 * 10 9 7 32 32 H 1.08998 * 109.49985 * 174.58502 * 11 10 9 33 33 H 1.09007 * 109.49612 * 294.68339 * 11 10 9 34 34 H 1.09003 * 109.46002 * 58.65302 * 12 11 10 35 35 H 1.08997 * 109.45892 * 178.63081 * 12 11 10 36 36 H 1.09004 * 109.50150 * 301.41073 * 13 12 11 37 37 H 1.09003 * 109.49838 * 181.31470 * 13 12 11 38 38 H 1.09007 * 109.47533 * 300.18410 * 16 14 9 39 39 H 1.08998 * 109.47614 * 180.18616 * 16 14 9 40 40 H 0.96994 * 120.00164 * 359.97438 * 17 16 14 41 41 H 1.07999 * 126.26855 * 359.97438 * 21 20 18 42 42 H 1.07996 * 126.27346 * 179.97438 * 22 21 20 43 43 H 0.96992 * 120.00396 * 0.02562 * 25 24 23 44 44 H 0.97005 * 119.99991 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0655 -1.2165 0.2288 9 7 1.3569 -2.3698 -0.2918 10 6 0.2144 -2.3780 -1.2156 11 6 0.4762 -3.4129 -2.3144 12 6 0.7744 -4.7693 -1.6715 13 6 2.0295 -4.6591 -0.8029 14 6 1.7854 -3.6383 0.3131 15 1 1.0075 -4.0050 0.9828 16 6 3.0789 -3.4200 1.1005 17 7 2.8458 -2.4343 2.1589 18 6 3.8511 -2.0816 2.9844 19 8 4.9516 -2.5818 2.8510 20 6 3.6169 -1.0900 4.0482 21 6 4.5533 -0.6417 4.9564 22 6 3.9225 0.2862 5.7843 23 6 2.6114 0.3884 5.3679 24 6 1.5815 1.2573 5.9627 25 7 0.3317 1.2635 5.4583 26 8 1.8589 1.9692 6.9089 27 7 2.4351 -0.4505 4.3023 28 1 1.6083 -0.5740 3.8106 29 1 -0.4850 0.8400 0.0004 30 1 -0.6927 -2.6432 -0.6725 31 1 0.0978 -1.3902 -1.6614 32 1 -0.4043 -3.4979 -2.9513 33 1 1.3306 -3.0987 -2.9139 34 1 -0.0703 -5.0713 -1.0523 35 1 0.9371 -5.5130 -2.4516 36 1 2.8694 -4.3332 -1.4166 37 1 2.2547 -5.6311 -0.3639 38 1 3.8560 -3.0551 0.4288 39 1 3.3969 -4.3628 1.5456 40 1 1.9683 -2.0350 2.2651 41 1 5.5857 -0.9531 5.0160 42 1 4.3769 0.8255 6.6022 43 1 0.1103 0.6955 4.7039 44 1 -0.3465 1.8360 5.8498 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024652533.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:22 Heat of formation + Delta-G solvation = -37.249326 kcal Electronic energy + Delta-G solvation = -27946.781840 eV Core-core repulsion = 24091.969135 eV Total energy + Delta-G solvation = -3854.812705 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.58371 -40.64638 -39.86800 -39.13443 -35.82917 -34.93570 -34.91203 -32.72914 -31.97098 -31.68701 -30.60549 -27.74759 -26.65791 -24.88192 -23.80761 -22.73105 -22.19319 -21.44096 -21.05205 -20.73842 -20.08737 -18.56125 -18.05583 -17.76575 -17.36998 -16.83184 -16.48488 -16.07088 -15.82949 -15.62374 -15.43802 -15.10173 -14.93170 -14.81324 -14.61840 -14.43742 -14.05659 -13.81937 -13.75945 -13.58655 -13.40818 -12.88597 -12.82189 -12.59633 -12.34001 -12.07542 -11.79697 -11.64390 -11.52374 -11.29536 -11.09363 -10.95036 -10.90369 -10.54187 -10.18649 -10.01875 -9.39676 -8.56920 -7.85055 -5.31215 -0.06273 1.09104 1.37155 1.43665 1.48515 1.74754 2.18048 2.19951 2.35431 2.37707 2.45119 3.28734 3.57486 3.77509 3.81934 3.98673 4.18351 4.20657 4.24072 4.28503 4.44157 4.55462 4.66281 4.75408 4.80169 4.88420 5.01403 5.04215 5.15552 5.24193 5.28980 5.33227 5.37223 5.47603 5.53596 5.64740 5.68475 5.73513 5.74732 5.84950 6.01617 6.25409 6.42693 6.59039 7.05577 7.15045 7.18628 7.87125 8.40906 9.17747 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013024 B = 0.004766 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.345173 B = 5874.005398 C = 6874.095811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.019 4.019 3 Si 0.923 3.077 4 H -0.296 1.296 5 H -0.294 1.294 6 H -0.284 1.284 7 C -0.237 4.237 8 H 0.059 0.941 9 N -0.599 5.599 10 C 0.178 3.822 11 C -0.137 4.137 12 C -0.103 4.103 13 C -0.123 4.123 14 C 0.160 3.840 15 H 0.039 0.961 16 C 0.137 3.863 17 N -0.688 5.688 18 C 0.577 3.423 19 O -0.571 6.571 20 C -0.014 4.014 21 C -0.132 4.132 22 C -0.124 4.124 23 C -0.032 4.032 24 C 0.596 3.404 25 N -0.833 5.833 26 O -0.566 6.566 27 N -0.505 5.505 28 H 0.427 0.573 29 H 0.250 0.750 30 H 0.006 0.994 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.043 0.957 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.082 0.918 38 H 0.049 0.951 39 H 0.080 0.920 40 H 0.409 0.591 41 H 0.164 0.836 42 H 0.168 0.832 43 H 0.410 0.590 44 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.334 -5.894 4.804 7.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.217 4.217 3 Si 0.754 3.246 4 H -0.223 1.223 5 H -0.221 1.221 6 H -0.210 1.210 7 C -0.368 4.368 8 H 0.077 0.923 9 N -0.324 5.324 10 C 0.053 3.947 11 C -0.176 4.176 12 C -0.140 4.140 13 C -0.163 4.163 14 C 0.055 3.945 15 H 0.056 0.944 16 C 0.013 3.987 17 N -0.337 5.337 18 C 0.364 3.636 19 O -0.452 6.452 20 C -0.132 4.132 21 C -0.159 4.159 22 C -0.150 4.150 23 C -0.150 4.150 24 C 0.382 3.618 25 N -0.396 5.396 26 O -0.444 6.444 27 N -0.103 5.103 28 H 0.267 0.733 29 H 0.059 0.941 30 H 0.024 0.976 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.067 0.933 39 H 0.098 0.902 40 H 0.246 0.754 41 H 0.181 0.819 42 H 0.186 0.814 43 H 0.240 0.760 44 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -0.542 -5.761 5.179 7.766 hybrid contribution -0.796 1.508 -0.785 1.877 sum -1.338 -4.253 4.394 6.260 Atomic orbital electron populations 1.70069 1.05380 1.25349 1.55119 1.25273 0.95436 0.98972 1.01998 0.86060 0.78126 0.82586 0.77803 1.22284 1.22055 1.21038 1.19152 0.91605 0.84997 1.41012 0.92342 1.44218 1.35813 1.02553 1.49784 1.20583 0.88026 0.96917 0.89206 1.22065 1.00331 0.96789 0.98443 1.21340 0.97465 0.96375 0.98831 1.21902 0.98195 0.98793 0.97362 1.20897 0.93061 0.87521 0.93071 0.94381 1.21362 0.97882 0.91071 0.88336 1.45898 1.13532 1.43127 1.31143 1.17355 0.84512 0.80965 0.80794 1.90753 1.24635 1.56489 1.73322 1.20677 0.87791 1.02518 1.02239 1.21438 0.99849 0.99143 0.95424 1.21459 0.91234 1.00483 1.01861 1.20614 0.97554 1.01453 0.95407 1.17144 0.82208 0.80507 0.81966 1.43604 1.11181 1.47607 1.37257 1.90837 1.81265 1.43196 1.29151 1.41956 1.11693 1.31623 1.24995 0.73256 0.94053 0.97602 0.93232 0.91908 0.93852 0.92243 0.91026 0.92898 0.89902 0.93270 0.90215 0.75419 0.81861 0.81425 0.75992 0.74757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -44.88 11.24 21.65 0.24 -44.64 16 2 C -0.02 -0.92 4.96 84.86 0.42 -0.50 16 3 Si 0.92 41.29 29.58 68.60 2.03 43.31 16 4 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 5 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 6 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 7 C -0.24 -10.81 6.97 84.03 0.59 -10.22 16 8 H 0.06 2.81 5.86 -2.91 -0.02 2.79 16 9 N -0.60 -24.48 2.97 -675.24 -2.01 -26.49 16 10 C 0.18 7.31 5.27 86.36 0.46 7.77 16 11 C -0.14 -4.48 6.08 30.67 0.19 -4.30 16 12 C -0.10 -2.76 5.88 30.62 0.18 -2.58 16 13 C -0.12 -3.42 5.37 30.67 0.16 -3.26 16 14 C 0.16 5.32 3.01 44.98 0.14 5.45 16 15 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 16 C 0.14 4.56 4.43 86.38 0.38 4.94 16 17 N -0.69 -23.39 3.84 -466.50 -1.79 -25.18 16 18 C 0.58 20.61 7.81 86.63 0.68 21.29 16 19 O -0.57 -23.31 16.87 -4.08 -0.07 -23.38 16 20 C -0.01 -0.43 7.04 40.69 0.29 -0.14 16 21 C -0.13 -3.90 10.60 22.49 0.24 -3.66 16 22 C -0.12 -3.45 10.60 22.49 0.24 -3.21 16 23 C -0.03 -0.91 7.04 40.69 0.29 -0.62 16 24 C 0.60 16.25 8.08 86.63 0.70 16.95 16 25 N -0.83 -16.32 8.87 -175.98 -1.56 -17.88 16 26 O -0.57 -18.88 17.71 -4.09 -0.07 -18.96 16 27 N -0.50 -13.94 5.90 -172.54 -1.02 -14.95 16 28 H 0.43 10.58 7.34 -92.71 -0.68 9.90 16 29 H 0.25 12.25 8.31 -92.71 -0.77 11.48 16 30 H 0.01 0.25 8.14 -2.38 -0.02 0.23 16 31 H 0.05 2.38 6.19 -2.39 -0.01 2.36 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.05 1.85 7.42 -2.38 -0.02 1.84 16 39 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.41 13.90 6.49 -92.71 -0.60 13.30 16 41 H 0.16 4.40 8.06 -2.91 -0.02 4.38 16 42 H 0.17 4.09 8.06 -2.91 -0.02 4.06 16 43 H 0.41 6.89 7.93 -92.71 -0.74 6.16 16 44 H 0.42 6.65 8.93 -92.70 -0.83 5.82 16 Total: -1.00 -61.22 359.30 -1.07 -62.29 By element: Atomic # 1 Polarization: 39.74 SS G_CDS: -1.77 Total: 37.97 kcal Atomic # 6 Polarization: 22.96 SS G_CDS: 4.94 Total: 27.90 kcal Atomic # 7 Polarization: -123.00 SS G_CDS: -6.13 Total: -129.14 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -0.14 Total: -42.34 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Total: -61.22 -1.07 -62.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024652533.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.039 kcal (2) G-P(sol) polarization free energy of solvation -61.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds