Wall clock time and date at job start Tue Mar 31 2020 12:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00106 * 2 1 4 4 H 1.48500 * 109.47232 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47034 * 120.00061 * 3 2 1 6 6 H 1.48499 * 109.47122 * 239.99964 * 3 2 1 7 7 C 1.38812 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99789 * 167.45578 * 7 2 1 9 9 N 1.36940 * 119.99929 * 347.44882 * 7 2 1 10 10 C 1.46926 * 120.63024 * 328.91235 * 9 7 2 11 11 C 1.53192 * 108.77459 * 233.58701 * 10 9 7 12 12 C 1.53042 * 109.31105 * 305.36623 * 11 10 9 13 13 C 1.53039 * 109.53935 * 61.36584 * 12 11 10 14 14 C 1.46928 * 120.62846 * 148.63387 * 9 7 2 15 15 H 1.08995 * 109.58273 * 246.20188 * 14 9 7 16 16 C 1.53003 * 109.58520 * 6.62625 * 14 9 7 17 17 N 1.46498 * 109.47219 * 299.60755 * 16 14 9 18 18 C 1.34777 * 119.99893 * 180.02562 * 17 16 14 19 19 O 1.21609 * 120.00143 * 359.97438 * 18 17 16 20 20 C 1.47394 * 119.99918 * 179.97438 * 18 17 16 21 21 C 1.38201 * 126.46361 * 0.02562 * 20 18 17 22 22 N 1.34259 * 108.40131 * 179.97438 * 21 20 18 23 23 H 0.96998 * 125.39905 * 179.97438 * 22 21 20 24 24 C 1.37779 * 109.21202 * 0.02562 * 22 21 20 25 25 C 1.46818 * 125.85026 * 179.97438 * 24 22 21 26 26 N 1.34780 * 119.99633 * 359.97438 * 25 24 22 27 27 O 1.21675 * 120.00218 * 179.97438 * 25 24 22 28 28 C 1.36350 * 108.30336 * 359.76486 * 24 22 21 29 29 H 0.97005 * 120.00141 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.58509 * 353.37123 * 10 9 7 31 31 H 1.08998 * 109.58409 * 113.65630 * 10 9 7 32 32 H 1.08996 * 109.49746 * 65.31513 * 11 10 9 33 33 H 1.09002 * 109.49741 * 185.41565 * 11 10 9 34 34 H 1.08992 * 109.46127 * 181.38948 * 12 11 10 35 35 H 1.09006 * 109.46201 * 301.35940 * 12 11 10 36 36 H 1.09000 * 109.49728 * 58.58408 * 13 12 11 37 37 H 1.09004 * 109.49603 * 178.65227 * 13 12 11 38 38 H 1.09000 * 109.47267 * 59.60671 * 16 14 9 39 39 H 1.09005 * 109.46599 * 179.60710 * 16 14 9 40 40 H 0.96998 * 120.00067 * 359.97438 * 17 16 14 41 41 H 1.08009 * 125.80268 * 359.97438 * 21 20 18 42 42 H 0.96995 * 120.00154 * 0.02562 * 26 25 24 43 43 H 0.97001 * 119.99538 * 179.97438 * 26 25 24 44 44 H 1.08003 * 126.49913 * 180.22490 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1039 1.6963 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0709 -1.2132 -0.2037 9 7 1.3499 -2.3740 0.2567 10 6 0.1855 -2.3962 1.1524 11 6 0.4202 -3.4489 2.2402 12 6 0.7332 -4.7950 1.5827 13 6 2.0090 -4.6718 0.7465 14 6 1.7889 -3.6320 -0.3627 15 1 1.0231 -3.9862 -1.0527 16 6 3.0985 -3.4014 -1.1195 17 7 2.8871 -2.3997 -2.1673 18 6 3.9090 -2.0349 -2.9669 19 8 5.0065 -2.5370 -2.8182 20 6 3.6961 -1.0274 -4.0215 21 6 2.5120 -0.3743 -4.3066 22 7 2.7269 0.4643 -5.3328 23 1 2.0607 1.0444 -5.7333 24 6 4.0435 0.3695 -5.7277 25 6 4.6705 1.1256 -6.8189 26 7 3.9422 2.0057 -7.5341 27 8 5.8475 0.9577 -7.0775 28 6 4.6656 -0.5434 -4.9285 29 1 -0.4850 0.8401 0.0004 30 1 0.0602 -1.4163 1.6131 31 1 -0.7088 -2.6492 0.5828 32 1 1.2600 -3.1453 2.8651 33 1 -0.4754 -3.5435 2.8543 34 1 0.8764 -5.5514 2.3543 35 1 -0.0964 -5.0861 0.9383 36 1 2.8338 -4.3566 1.3856 37 1 2.2445 -5.6369 0.2979 38 1 3.8612 -3.0467 -0.4263 39 1 3.4260 -4.3374 -1.5723 40 1 2.0116 -1.9994 -2.2862 41 1 1.5731 -0.5147 -3.7914 42 1 3.0040 2.1398 -7.3277 43 1 4.3566 2.5055 -8.2548 44 1 5.7023 -0.8417 -4.9802 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024797883.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:26 Heat of formation + Delta-G solvation = -14.589253 kcal Electronic energy + Delta-G solvation = -27551.286838 eV Core-core repulsion = 23697.456747 eV Total energy + Delta-G solvation = -3853.830090 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.46999 -39.14473 -38.61557 -37.50292 -34.07796 -33.99118 -33.08400 -31.39223 -30.69655 -29.92946 -29.25107 -26.06349 -24.87580 -23.16300 -22.48572 -22.08877 -20.63547 -20.20424 -19.36870 -19.16818 -18.78897 -17.18024 -16.54624 -15.97658 -15.68968 -15.54846 -15.24032 -14.95032 -14.29733 -14.06666 -13.98051 -13.85891 -13.48838 -13.36515 -13.29081 -12.98535 -12.78014 -12.42069 -12.17059 -11.99439 -11.69476 -11.18685 -10.96056 -10.80331 -10.55808 -10.43236 -10.31597 -10.16390 -10.01747 -10.01332 -9.56789 -9.46621 -9.24303 -9.01490 -8.59767 -8.35731 -8.07860 -6.68852 -5.87849 -3.34681 1.41198 2.12413 2.93496 3.23685 3.25242 3.30628 3.34879 3.42428 3.96408 4.12025 4.39937 4.77066 5.05259 5.19230 5.23689 5.29155 5.45598 5.53045 5.63994 5.67956 5.94076 5.99677 6.05587 6.10172 6.17219 6.35141 6.36677 6.42583 6.43971 6.56488 6.60617 6.70677 6.72957 6.76532 6.85496 6.99361 7.04617 7.23041 7.28866 7.37001 7.63833 7.76648 8.00213 8.36414 8.39620 9.00299 9.13340 9.74408 10.32580 11.18254 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015891 B = 0.003991 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.541495 B = 7013.688032 C = 8105.114253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.008 3.992 3 Si 0.889 3.111 4 H -0.293 1.293 5 H -0.284 1.284 6 H -0.279 1.279 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.589 5.589 10 C 0.173 3.827 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.128 4.128 14 C 0.160 3.840 15 H 0.032 0.968 16 C 0.136 3.864 17 N -0.692 5.692 18 C 0.581 3.419 19 O -0.564 6.564 20 C -0.223 4.223 21 C 0.089 3.911 22 N -0.530 5.530 23 H 0.417 0.583 24 C -0.085 4.085 25 C 0.598 3.402 26 N -0.858 5.858 27 O -0.532 6.532 28 C -0.038 4.038 29 H 0.253 0.747 30 H 0.086 0.914 31 H 0.018 0.982 32 H 0.053 0.947 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.051 0.949 38 H 0.066 0.934 39 H 0.056 0.944 40 H 0.411 0.589 41 H 0.188 0.812 42 H 0.395 0.605 43 H 0.406 0.594 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.150 -0.273 -9.187 9.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.719 3.281 4 H -0.219 1.219 5 H -0.210 1.210 6 H -0.205 1.205 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.313 5.313 10 C 0.048 3.952 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.050 0.950 16 C 0.012 3.988 17 N -0.342 5.342 18 C 0.368 3.632 19 O -0.445 6.445 20 C -0.232 4.232 21 C -0.053 4.053 22 N -0.125 5.125 23 H 0.254 0.746 24 C -0.194 4.194 25 C 0.385 3.615 26 N -0.422 5.422 27 O -0.408 6.408 28 C -0.065 4.065 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.248 0.752 41 H 0.205 0.795 42 H 0.223 0.777 43 H 0.237 0.763 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.772 -0.604 -9.217 9.269 hybrid contribution -0.827 1.823 -0.192 2.011 sum -1.599 1.220 -9.409 9.621 Atomic orbital electron populations 1.69996 1.05048 1.25415 1.54331 1.25034 0.95142 0.97900 1.01014 0.86568 0.79025 0.83739 0.78785 1.21853 1.21016 1.20522 1.19221 0.91767 0.83780 1.42691 0.91128 1.44106 1.34095 1.02518 1.50581 1.20770 0.88147 0.97377 0.88951 1.22197 0.99853 0.96679 0.99637 1.21363 0.97492 0.97355 0.98296 1.22015 0.98045 0.98238 0.98439 1.20827 0.93178 0.88458 0.92187 0.95010 1.21263 0.98123 0.90283 0.89176 1.45802 1.13441 1.42336 1.32660 1.17304 0.84326 0.80984 0.80605 1.90716 1.24699 1.56719 1.72389 1.19810 0.94012 1.05944 1.03449 1.22727 1.00465 0.91935 0.90142 1.41642 1.09778 1.33650 1.27476 0.74562 1.19863 0.85043 1.09417 1.05126 1.17048 0.85738 0.78403 0.80298 1.43704 1.14532 1.45292 1.38678 1.90887 1.15218 1.66222 1.68471 1.21103 0.99600 0.93604 0.92144 0.93695 0.89618 0.96422 0.92844 0.93604 0.93763 0.92921 0.92048 0.93038 0.91589 0.92626 0.75159 0.79506 0.77721 0.76250 0.82592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.08 11.14 55.49 0.62 -22.46 16 2 C 0.01 0.19 5.00 -17.43 -0.09 0.10 16 3 Si 0.89 20.37 29.57 -169.99 -5.03 15.34 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.24 -5.86 6.98 -15.06 -0.11 -5.96 16 8 H 0.07 1.77 5.87 -52.48 -0.31 1.47 16 9 N -0.59 -12.90 2.97 -164.52 -0.49 -13.39 16 10 C 0.17 3.75 5.26 -3.71 -0.02 3.74 16 11 C -0.14 -2.61 6.08 -26.61 -0.16 -2.77 16 12 C -0.11 -1.71 5.88 -26.69 -0.16 -1.87 16 13 C -0.13 -2.10 5.40 -26.39 -0.14 -2.24 16 14 C 0.16 2.99 3.03 -67.37 -0.20 2.78 16 15 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 16 C 0.14 2.53 4.44 -4.04 -0.02 2.51 16 17 N -0.69 -12.97 3.84 -61.39 -0.24 -13.20 16 18 C 0.58 11.42 7.81 -12.53 -0.10 11.32 16 19 O -0.56 -12.81 16.92 5.27 0.09 -12.72 16 20 C -0.22 -3.77 6.13 -105.02 -0.64 -4.42 16 21 C 0.09 1.20 11.43 -16.50 -0.19 1.01 16 22 N -0.53 -5.66 5.91 -9.30 -0.05 -5.71 16 23 H 0.42 2.64 8.14 -40.82 -0.33 2.31 16 24 C -0.08 -1.14 6.99 -82.40 -0.58 -1.72 16 25 C 0.60 7.67 8.06 -12.79 -0.10 7.57 16 26 N -0.86 -6.46 8.87 30.29 0.27 -6.19 16 27 O -0.53 -8.97 17.69 5.21 0.09 -8.87 16 28 C -0.04 -0.62 10.37 -39.10 -0.41 -1.03 16 29 H 0.25 6.40 8.31 -40.82 -0.34 6.06 16 30 H 0.09 2.12 6.15 -51.93 -0.32 1.80 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 1.36 7.41 -51.93 -0.38 0.98 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.41 7.65 6.32 -40.82 -0.26 7.39 16 41 H 0.19 2.27 7.44 -52.48 -0.39 1.88 16 42 H 0.40 1.75 7.91 -40.82 -0.32 1.43 16 43 H 0.41 2.47 8.93 -40.82 -0.36 2.11 16 44 H 0.16 2.67 8.06 -52.48 -0.42 2.25 16 LS Contribution 358.89 15.07 5.41 5.41 Total: -1.00 -32.38 358.89 -8.28 -40.66 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -6.04 Total: 12.11 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: -2.91 Total: 9.03 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: 0.11 Total: -60.95 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: 0.18 Total: -21.60 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.03 Total: 15.34 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.38 -8.28 -40.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024797883.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.074 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds