Wall clock time and date at job start Tue Mar 31 2020 12:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00106 * 2 1 4 4 H 1.48500 * 109.47232 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47034 * 120.00061 * 3 2 1 6 6 H 1.48499 * 109.47122 * 239.99964 * 3 2 1 7 7 C 1.38812 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99789 * 167.45578 * 7 2 1 9 9 N 1.36940 * 119.99929 * 347.44882 * 7 2 1 10 10 C 1.46926 * 120.63024 * 328.91235 * 9 7 2 11 11 C 1.53192 * 108.77459 * 233.58701 * 10 9 7 12 12 C 1.53042 * 109.31105 * 305.36623 * 11 10 9 13 13 C 1.53039 * 109.53935 * 61.36584 * 12 11 10 14 14 C 1.46928 * 120.62846 * 148.63387 * 9 7 2 15 15 H 1.08995 * 109.58273 * 246.20188 * 14 9 7 16 16 C 1.53003 * 109.58520 * 6.62625 * 14 9 7 17 17 N 1.46498 * 109.47219 * 299.60755 * 16 14 9 18 18 C 1.34777 * 119.99893 * 180.02562 * 17 16 14 19 19 O 1.21609 * 120.00143 * 359.97438 * 18 17 16 20 20 C 1.47394 * 119.99918 * 179.97438 * 18 17 16 21 21 C 1.38201 * 126.46361 * 0.02562 * 20 18 17 22 22 N 1.34259 * 108.40131 * 179.97438 * 21 20 18 23 23 H 0.96998 * 125.39905 * 179.97438 * 22 21 20 24 24 C 1.37779 * 109.21202 * 0.02562 * 22 21 20 25 25 C 1.46818 * 125.85026 * 179.97438 * 24 22 21 26 26 N 1.34780 * 119.99633 * 359.97438 * 25 24 22 27 27 O 1.21675 * 120.00218 * 179.97438 * 25 24 22 28 28 C 1.36350 * 108.30336 * 359.76486 * 24 22 21 29 29 H 0.97005 * 120.00141 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.58509 * 353.37123 * 10 9 7 31 31 H 1.08998 * 109.58409 * 113.65630 * 10 9 7 32 32 H 1.08996 * 109.49746 * 65.31513 * 11 10 9 33 33 H 1.09002 * 109.49741 * 185.41565 * 11 10 9 34 34 H 1.08992 * 109.46127 * 181.38948 * 12 11 10 35 35 H 1.09006 * 109.46201 * 301.35940 * 12 11 10 36 36 H 1.09000 * 109.49728 * 58.58408 * 13 12 11 37 37 H 1.09004 * 109.49603 * 178.65227 * 13 12 11 38 38 H 1.09000 * 109.47267 * 59.60671 * 16 14 9 39 39 H 1.09005 * 109.46599 * 179.60710 * 16 14 9 40 40 H 0.96998 * 120.00067 * 359.97438 * 17 16 14 41 41 H 1.08009 * 125.80268 * 359.97438 * 21 20 18 42 42 H 0.96995 * 120.00154 * 0.02562 * 26 25 24 43 43 H 0.97001 * 119.99538 * 179.97438 * 26 25 24 44 44 H 1.08003 * 126.49913 * 180.22490 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1039 1.6963 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0709 -1.2132 -0.2037 9 7 1.3499 -2.3740 0.2567 10 6 0.1855 -2.3962 1.1524 11 6 0.4202 -3.4489 2.2402 12 6 0.7332 -4.7950 1.5827 13 6 2.0090 -4.6718 0.7465 14 6 1.7889 -3.6320 -0.3627 15 1 1.0231 -3.9862 -1.0527 16 6 3.0985 -3.4014 -1.1195 17 7 2.8871 -2.3997 -2.1673 18 6 3.9090 -2.0349 -2.9669 19 8 5.0065 -2.5370 -2.8182 20 6 3.6961 -1.0274 -4.0215 21 6 2.5120 -0.3743 -4.3066 22 7 2.7269 0.4643 -5.3328 23 1 2.0607 1.0444 -5.7333 24 6 4.0435 0.3695 -5.7277 25 6 4.6705 1.1256 -6.8189 26 7 3.9422 2.0057 -7.5341 27 8 5.8475 0.9577 -7.0775 28 6 4.6656 -0.5434 -4.9285 29 1 -0.4850 0.8401 0.0004 30 1 0.0602 -1.4163 1.6131 31 1 -0.7088 -2.6492 0.5828 32 1 1.2600 -3.1453 2.8651 33 1 -0.4754 -3.5435 2.8543 34 1 0.8764 -5.5514 2.3543 35 1 -0.0964 -5.0861 0.9383 36 1 2.8338 -4.3566 1.3856 37 1 2.2445 -5.6369 0.2979 38 1 3.8612 -3.0467 -0.4263 39 1 3.4260 -4.3374 -1.5723 40 1 2.0116 -1.9994 -2.2862 41 1 1.5731 -0.5147 -3.7914 42 1 3.0040 2.1398 -7.3277 43 1 4.3566 2.5055 -8.2548 44 1 5.7023 -0.8417 -4.9802 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024797883.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:25 Heat of formation + Delta-G solvation = -39.229143 kcal Electronic energy + Delta-G solvation = -27552.355303 eV Core-core repulsion = 23697.456747 eV Total energy + Delta-G solvation = -3854.898556 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.60267 -40.50260 -39.87451 -39.05747 -35.62022 -34.91915 -34.83833 -32.72042 -32.06578 -31.60294 -30.44503 -27.65432 -26.51373 -24.25595 -23.92634 -23.60122 -22.14271 -21.32225 -20.83804 -20.40116 -20.03290 -18.37711 -17.92918 -17.33775 -17.21259 -16.86906 -16.40474 -16.35851 -15.99105 -15.64710 -15.32033 -15.08533 -14.83699 -14.65837 -14.62244 -14.46119 -14.26771 -13.99774 -13.52966 -13.43786 -13.31179 -12.81453 -12.73707 -12.52265 -12.27019 -11.99229 -11.75231 -11.55472 -11.49089 -11.15692 -11.04972 -10.87648 -10.81084 -10.46059 -10.23192 -9.76956 -9.39425 -8.49128 -7.76634 -5.23772 0.32490 0.80942 1.43885 1.48800 1.55436 1.91480 2.15415 2.31133 2.52528 2.59966 2.69889 3.37997 3.64366 3.89131 3.91704 4.04354 4.10453 4.24625 4.27372 4.32611 4.49459 4.59490 4.70011 4.71457 4.85326 4.91012 4.94426 5.04868 5.19647 5.26835 5.32774 5.35486 5.43401 5.51764 5.51889 5.70449 5.72398 5.76365 5.82407 5.90280 6.20890 6.41164 6.51064 6.86755 7.13996 7.26433 7.48251 7.94396 8.48051 9.26877 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015891 B = 0.003991 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.541495 B = 7013.688032 C = 8105.114253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.022 4.022 3 Si 0.930 3.070 4 H -0.292 1.292 5 H -0.300 1.300 6 H -0.278 1.278 7 C -0.233 4.233 8 H 0.057 0.943 9 N -0.601 5.601 10 C 0.178 3.822 11 C -0.137 4.137 12 C -0.102 4.102 13 C -0.124 4.124 14 C 0.162 3.838 15 H 0.039 0.961 16 C 0.139 3.861 17 N -0.688 5.688 18 C 0.577 3.423 19 O -0.605 6.605 20 C -0.256 4.256 21 C 0.109 3.891 22 N -0.499 5.499 23 H 0.442 0.558 24 C -0.069 4.069 25 C 0.599 3.401 26 N -0.827 5.827 27 O -0.578 6.578 28 C -0.071 4.071 29 H 0.249 0.751 30 H 0.051 0.949 31 H 0.005 0.995 32 H 0.042 0.958 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.080 0.920 38 H 0.041 0.959 39 H 0.071 0.929 40 H 0.412 0.588 41 H 0.206 0.794 42 H 0.415 0.585 43 H 0.419 0.581 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.808 -0.341 -10.078 10.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.219 4.219 3 Si 0.761 3.239 4 H -0.218 1.218 5 H -0.228 1.228 6 H -0.204 1.204 7 C -0.363 4.363 8 H 0.074 0.926 9 N -0.325 5.325 10 C 0.053 3.947 11 C -0.176 4.176 12 C -0.140 4.140 13 C -0.163 4.163 14 C 0.056 3.944 15 H 0.057 0.943 16 C 0.015 3.985 17 N -0.337 5.337 18 C 0.366 3.634 19 O -0.489 6.489 20 C -0.265 4.265 21 C -0.036 4.036 22 N -0.096 5.096 23 H 0.285 0.715 24 C -0.181 4.181 25 C 0.385 3.615 26 N -0.392 5.392 27 O -0.457 6.457 28 C -0.098 4.098 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.024 0.976 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.059 0.941 39 H 0.089 0.911 40 H 0.250 0.750 41 H 0.223 0.777 42 H 0.246 0.754 43 H 0.252 0.748 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.509 -0.630 -10.146 10.471 hybrid contribution -0.328 1.860 0.059 1.890 sum -2.837 1.230 -10.087 10.550 Atomic orbital electron populations 1.70078 1.05580 1.25294 1.55708 1.25322 0.95480 0.99234 1.01856 0.85938 0.77920 0.82179 0.77862 1.21774 1.22779 1.20425 1.19140 0.91132 0.84756 1.41310 0.92585 1.44260 1.33953 1.03087 1.51225 1.20593 0.87682 0.96867 0.89582 1.22070 1.00284 0.96788 0.98474 1.21341 0.97249 0.96485 0.98887 1.21981 0.98109 0.98662 0.97573 1.20957 0.92859 0.87606 0.92962 0.94340 1.21238 0.97589 0.90797 0.88872 1.45765 1.13270 1.42233 1.32398 1.17729 0.83723 0.81037 0.80935 1.90677 1.26166 1.58382 1.73688 1.19663 0.95844 1.07078 1.03922 1.22815 0.99733 0.90999 0.90009 1.41515 1.09290 1.32706 1.26112 0.71504 1.19812 0.85683 1.08157 1.04428 1.16970 0.85257 0.78925 0.80352 1.43422 1.15175 1.43111 1.37473 1.90876 1.17278 1.67850 1.69726 1.21050 0.99229 0.95648 0.93834 0.94152 0.93025 0.97650 0.93939 0.91806 0.91043 0.92178 0.93111 0.90122 0.94070 0.91101 0.75004 0.77734 0.75447 0.74808 0.84637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.02 11.14 21.65 0.24 -46.78 16 2 C -0.02 -1.10 5.00 84.86 0.42 -0.67 16 3 Si 0.93 41.98 29.57 68.60 2.03 44.01 16 4 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 5 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.23 -11.19 6.98 84.03 0.59 -10.60 16 8 H 0.06 2.87 5.87 -2.91 -0.02 2.85 16 9 N -0.60 -26.11 2.97 -674.41 -2.00 -28.12 16 10 C 0.18 7.67 5.26 86.36 0.45 8.12 16 11 C -0.14 -4.72 6.08 30.67 0.19 -4.53 16 12 C -0.10 -2.94 5.88 30.62 0.18 -2.76 16 13 C -0.12 -3.77 5.40 30.82 0.17 -3.61 16 14 C 0.16 5.85 3.03 45.12 0.14 5.98 16 15 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 16 C 0.14 5.18 4.44 86.38 0.38 5.56 16 17 N -0.69 -25.89 3.84 -466.39 -1.79 -27.68 16 18 C 0.58 23.25 7.81 86.65 0.68 23.93 16 19 O -0.61 -28.65 16.92 -4.06 -0.07 -28.72 16 20 C -0.26 -8.72 6.13 -20.12 -0.12 -8.84 16 21 C 0.11 2.73 11.43 84.31 0.96 3.69 16 22 N -0.50 -9.29 5.91 -183.35 -1.08 -10.37 16 23 H 0.44 3.75 8.14 -92.71 -0.75 2.99 16 24 C -0.07 -1.79 6.99 40.01 0.28 -1.51 16 25 C 0.60 14.43 8.06 86.49 0.70 15.13 16 26 N -0.83 -9.88 8.87 -176.29 -1.56 -11.44 16 27 O -0.58 -19.40 17.69 -4.27 -0.08 -19.48 16 28 C -0.07 -2.39 10.37 22.58 0.23 -2.16 16 29 H 0.25 12.58 8.31 -92.70 -0.77 11.81 16 30 H 0.05 2.57 6.15 -2.39 -0.01 2.56 16 31 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.04 1.74 7.41 -2.39 -0.02 1.72 16 39 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 40 H 0.41 15.19 6.32 -92.71 -0.59 14.60 16 41 H 0.21 4.48 7.44 -2.91 -0.02 4.46 16 42 H 0.41 1.94 7.91 -92.71 -0.73 1.20 16 43 H 0.42 3.78 8.93 -92.71 -0.83 2.96 16 44 H 0.14 5.02 8.06 -2.91 -0.02 5.00 16 Total: -1.00 -72.95 358.89 -0.89 -73.84 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: -1.82 Total: 26.99 kcal Atomic # 6 Polarization: 22.49 SS G_CDS: 5.25 Total: 27.74 kcal Atomic # 7 Polarization: -118.19 SS G_CDS: -6.20 Total: -124.39 kcal Atomic # 8 Polarization: -48.05 SS G_CDS: -0.14 Total: -48.19 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -72.95 -0.89 -73.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024797883.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.613 kcal (2) G-P(sol) polarization free energy of solvation -72.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds