Wall clock time and date at job start Tue Mar 31 2020 12:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86796 * 119.99663 * 2 1 4 4 H 1.48494 * 109.47371 * 91.18324 * 3 2 1 5 5 H 1.48507 * 109.46708 * 211.17561 * 3 2 1 6 6 H 1.48499 * 109.47552 * 331.17649 * 3 2 1 7 7 C 1.38805 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00060 * 16.91532 * 7 2 1 9 9 N 1.36929 * 120.00525 * 196.91484 * 7 2 1 10 10 C 1.46928 * 120.63006 * 31.20546 * 9 7 2 11 11 C 1.53195 * 108.77708 * 126.37173 * 10 9 7 12 12 C 1.53034 * 109.31222 * 54.63641 * 11 10 9 13 13 C 1.53045 * 109.53684 * 298.63630 * 12 11 10 14 14 C 1.46929 * 120.63384 * 210.93027 * 9 7 2 15 15 H 1.09004 * 109.58265 * 113.83944 * 14 9 7 16 16 C 1.52993 * 109.58441 * 353.41754 * 14 9 7 17 17 N 1.46492 * 109.47448 * 60.25717 * 16 14 9 18 18 C 1.34780 * 120.00286 * 180.02562 * 17 16 14 19 19 O 1.21614 * 119.99978 * 359.97438 * 18 17 16 20 20 C 1.47393 * 120.00268 * 180.02562 * 18 17 16 21 21 C 1.38206 * 126.46008 * 359.67733 * 20 18 17 22 22 N 1.34266 * 108.39471 * 179.87086 * 21 20 18 23 23 H 0.96998 * 125.38841 * 180.17399 * 22 21 20 24 24 C 1.37782 * 109.21437 * 0.40929 * 22 21 20 25 25 C 1.46812 * 125.84732 * 179.72696 * 24 22 21 26 26 N 1.34779 * 119.99994 * 0.02634 * 25 24 22 27 27 O 1.21677 * 119.99982 * 180.02562 * 25 24 22 28 28 C 1.36347 * 108.30229 * 359.74620 * 24 22 21 29 29 H 0.97003 * 119.99841 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.59041 * 246.16024 * 10 9 7 31 31 H 1.08999 * 109.58318 * 6.44263 * 10 9 7 32 32 H 1.08994 * 109.49787 * 174.59189 * 11 10 9 33 33 H 1.09007 * 109.49470 * 294.65448 * 11 10 9 34 34 H 1.09004 * 109.46230 * 58.65179 * 12 11 10 35 35 H 1.08997 * 109.46472 * 178.62797 * 12 11 10 36 36 H 1.09002 * 109.49557 * 181.31209 * 13 12 11 37 37 H 1.08996 * 109.49769 * 301.37695 * 13 12 11 38 38 H 1.08999 * 109.47188 * 180.26164 * 16 14 9 39 39 H 1.09002 * 109.47200 * 300.25470 * 16 14 9 40 40 H 0.97001 * 120.00453 * 359.97438 * 17 16 14 41 41 H 1.08001 * 125.80546 * 0.02562 * 21 20 18 42 42 H 0.97000 * 119.99602 * 359.97438 * 26 25 24 43 43 H 0.96998 * 119.99940 * 179.97438 * 26 25 24 44 44 H 1.08004 * 126.49493 * 180.02562 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5227 2.0320 1.3997 5 1 3.5351 1.4475 -0.7248 6 1 1.4354 2.6598 -0.6750 7 6 2.0103 -1.2021 0.0005 8 1 1.5054 -2.1173 -0.2712 9 7 3.3352 -1.2277 0.3456 10 6 3.8743 -0.2669 1.3178 11 6 4.5951 -1.0397 2.4269 12 6 5.6471 -1.9587 1.8019 13 6 4.9613 -2.9674 0.8776 14 6 4.2435 -2.2202 -0.2449 15 1 4.9782 -1.7154 -0.8723 16 6 3.4405 -3.2129 -1.0877 17 7 2.7484 -2.4948 -2.1607 18 6 1.9748 -3.1700 -3.0337 19 8 1.8517 -4.3755 -2.9310 20 6 1.2789 -2.4475 -4.1136 21 6 1.3199 -1.0865 -4.3505 22 7 0.5589 -0.8201 -5.4241 23 1 0.4162 0.0595 -5.8072 24 6 0.0086 -1.9934 -5.8922 25 6 -0.8879 -2.1216 -7.0477 26 7 -1.2388 -1.0280 -7.7529 27 8 -1.3141 -3.2152 -7.3687 28 6 0.4389 -3.0148 -5.0981 29 1 -0.4850 0.8401 -0.0004 30 1 4.5782 0.4003 0.8204 31 1 3.0588 0.3158 1.7461 32 1 5.0816 -0.3367 3.1030 33 1 3.8725 -1.6378 2.9822 34 1 6.3550 -1.3619 1.2266 35 1 6.1783 -2.4917 2.5905 36 1 5.7086 -3.6365 0.4510 37 1 4.2360 -3.5482 1.4473 38 1 4.1155 -3.9510 -1.5210 39 1 2.7084 -3.7166 -0.4565 40 1 2.8463 -1.5332 -2.2425 41 1 1.8723 -0.3608 -3.7720 42 1 -0.8994 -0.1562 -7.4968 43 1 -1.8309 -1.1128 -8.5166 44 1 0.1861 -4.0597 -5.2022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024797884.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:29 Heat of formation + Delta-G solvation = -7.688004 kcal Electronic energy + Delta-G solvation = -27559.934880 eV Core-core repulsion = 23706.404050 eV Total energy + Delta-G solvation = -3853.530830 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.41051 -39.14461 -38.68374 -37.70440 -34.17118 -33.93956 -33.07472 -31.40561 -30.83191 -30.69057 -29.25406 -26.20154 -24.78586 -23.11237 -22.70692 -22.40811 -20.70666 -20.15112 -19.60424 -19.18463 -18.76346 -17.13820 -16.61155 -15.96512 -15.81606 -15.51526 -15.21685 -14.99114 -14.88864 -14.03808 -13.94222 -13.75818 -13.74302 -13.37943 -13.34637 -13.20706 -12.96993 -12.49013 -12.16234 -12.11173 -11.91340 -11.65365 -11.30228 -10.87196 -10.68143 -10.45829 -10.37787 -10.21186 -9.99071 -9.96636 -9.62881 -9.52222 -9.24836 -8.94707 -8.73218 -8.30914 -8.06732 -6.97823 -6.00496 -3.42402 1.47071 2.18664 2.98477 3.20110 3.28637 3.31584 3.34075 3.36308 3.96183 4.18739 4.41406 4.78142 4.82938 5.07485 5.20196 5.25038 5.32281 5.39859 5.47638 5.52823 5.75102 5.84139 5.97832 6.02359 6.10748 6.11790 6.20206 6.28764 6.37827 6.44011 6.46368 6.47662 6.56108 6.61571 6.66822 6.75433 6.82692 6.97889 7.09882 7.24480 7.32300 7.90643 8.05616 8.31162 8.38691 8.87258 9.03593 9.63452 10.02469 11.13620 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016661 B = 0.003933 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.157869 B = 7117.380793 C = 8274.300310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.027 3.973 3 Si 0.876 3.124 4 H -0.288 1.288 5 H -0.272 1.272 6 H -0.307 1.307 7 C -0.259 4.259 8 H 0.096 0.904 9 N -0.605 5.605 10 C 0.125 3.875 11 C -0.136 4.136 12 C -0.108 4.108 13 C -0.130 4.130 14 C 0.164 3.836 15 H 0.036 0.964 16 C 0.136 3.864 17 N -0.693 5.693 18 C 0.585 3.415 19 O -0.563 6.563 20 C -0.218 4.218 21 C 0.090 3.910 22 N -0.530 5.530 23 H 0.416 0.584 24 C -0.083 4.083 25 C 0.599 3.401 26 N -0.859 5.859 27 O -0.532 6.532 28 C -0.037 4.037 29 H 0.261 0.739 30 H 0.023 0.977 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.407 0.593 41 H 0.183 0.817 42 H 0.395 0.605 43 H 0.406 0.594 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.361 3.635 -8.924 11.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.172 4.172 3 Si 0.707 3.293 4 H -0.215 1.215 5 H -0.197 1.197 6 H -0.235 1.235 7 C -0.387 4.387 8 H 0.113 0.887 9 N -0.330 5.330 10 C -0.001 4.001 11 C -0.175 4.175 12 C -0.146 4.146 13 C -0.169 4.169 14 C 0.057 3.943 15 H 0.054 0.946 16 C 0.012 3.988 17 N -0.343 5.343 18 C 0.373 3.627 19 O -0.444 6.444 20 C -0.228 4.228 21 C -0.051 4.051 22 N -0.125 5.125 23 H 0.253 0.747 24 C -0.193 4.193 25 C 0.385 3.615 26 N -0.422 5.422 27 O -0.408 6.408 28 C -0.063 4.063 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.243 0.757 41 H 0.200 0.800 42 H 0.222 0.778 43 H 0.237 0.763 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 5.868 2.183 -9.039 10.996 hybrid contribution 0.249 2.647 -0.056 2.659 sum 6.118 4.830 -9.095 11.978 Atomic orbital electron populations 1.69834 1.05559 1.26236 1.52845 1.25344 0.95068 0.97126 0.99662 0.87095 0.79494 0.85095 0.77601 1.21539 1.19692 1.23547 1.19060 0.83233 0.94697 1.41741 0.88662 1.44436 1.06561 1.36065 1.45922 1.21389 0.96769 0.92061 0.89848 1.22005 0.98115 0.98831 0.98580 1.21367 0.97468 0.97457 0.98287 1.21870 0.99285 0.97815 0.97945 1.20662 0.91448 0.89907 0.92238 0.94625 1.21241 0.95301 0.93840 0.88381 1.45717 1.47989 1.11742 1.28808 1.17260 0.78394 0.86358 0.80733 1.90717 1.64385 1.14311 1.74956 1.19757 1.08468 0.92610 1.01927 1.22591 0.96001 0.97133 0.89405 1.41614 1.37663 1.08822 1.24432 0.74654 1.19838 1.09681 0.86614 1.03201 1.17047 0.79222 0.84225 0.80959 1.43702 1.53860 1.09688 1.34974 1.90887 1.55032 1.26164 1.68731 1.21091 0.94549 0.98838 0.91860 0.92881 0.95924 0.90997 0.93124 0.91782 0.92790 0.93066 0.92460 0.91573 0.92384 0.91220 0.75684 0.80013 0.77751 0.76283 0.82610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.40 13.97 55.49 0.78 -24.62 16 2 C 0.03 0.70 5.27 -17.43 -0.09 0.61 16 3 Si 0.88 19.87 24.32 -169.99 -4.13 15.73 16 4 H -0.29 -6.58 6.51 56.52 0.37 -6.21 16 5 H -0.27 -5.88 6.74 56.52 0.38 -5.50 16 6 H -0.31 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.26 -6.32 7.44 -15.07 -0.11 -6.43 16 8 H 0.10 2.62 6.04 -52.48 -0.32 2.30 16 9 N -0.60 -12.61 2.72 -165.03 -0.45 -13.06 16 10 C 0.12 2.47 4.20 -3.71 -0.02 2.46 16 11 C -0.14 -2.25 6.08 -26.61 -0.16 -2.41 16 12 C -0.11 -1.56 5.89 -26.69 -0.16 -1.71 16 13 C -0.13 -1.97 5.34 -26.83 -0.14 -2.11 16 14 C 0.16 2.87 2.99 -67.82 -0.20 2.67 16 15 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 16 C 0.14 2.49 4.42 -4.05 -0.02 2.47 16 17 N -0.69 -12.95 3.83 -61.40 -0.24 -13.18 16 18 C 0.59 11.71 7.81 -12.53 -0.10 11.61 16 19 O -0.56 -13.01 16.92 5.27 0.09 -12.92 16 20 C -0.22 -3.78 6.13 -105.02 -0.64 -4.42 16 21 C 0.09 1.24 11.43 -16.50 -0.19 1.05 16 22 N -0.53 -5.81 5.91 -9.30 -0.05 -5.87 16 23 H 0.42 2.75 8.14 -40.82 -0.33 2.42 16 24 C -0.08 -1.16 6.99 -82.41 -0.58 -1.73 16 25 C 0.60 7.87 8.06 -12.79 -0.10 7.77 16 26 N -0.86 -6.72 8.87 30.29 0.27 -6.45 16 27 O -0.53 -9.15 17.69 5.21 0.09 -9.06 16 28 C -0.04 -0.62 10.37 -39.10 -0.41 -1.03 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.02 0.44 7.05 -51.93 -0.37 0.08 16 31 H 0.07 1.59 4.64 -51.93 -0.24 1.35 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.07 1.45 7.42 -51.93 -0.39 1.07 16 40 H 0.41 7.38 6.30 -40.82 -0.26 7.12 16 41 H 0.18 2.21 7.44 -52.49 -0.39 1.82 16 42 H 0.39 1.86 7.91 -40.82 -0.32 1.54 16 43 H 0.41 2.58 8.93 -40.82 -0.36 2.22 16 44 H 0.16 2.74 8.06 -52.48 -0.42 2.31 16 LS Contribution 352.38 15.07 5.31 5.31 Total: -1.00 -34.33 352.38 -7.23 -41.55 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -5.97 Total: 13.77 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: -2.92 Total: 8.79 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: 0.30 Total: -63.18 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: 0.18 Total: -21.98 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.13 Total: 15.73 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.33 -7.23 -41.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024797884.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.865 kcal (2) G-P(sol) polarization free energy of solvation -34.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds