Wall clock time and date at job start Tue Mar 31 2020 12:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86796 * 119.99663 * 2 1 4 4 H 1.48494 * 109.47371 * 91.18324 * 3 2 1 5 5 H 1.48507 * 109.46708 * 211.17561 * 3 2 1 6 6 H 1.48499 * 109.47552 * 331.17649 * 3 2 1 7 7 C 1.38805 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00060 * 16.91532 * 7 2 1 9 9 N 1.36929 * 120.00525 * 196.91484 * 7 2 1 10 10 C 1.46928 * 120.63006 * 31.20546 * 9 7 2 11 11 C 1.53195 * 108.77708 * 126.37173 * 10 9 7 12 12 C 1.53034 * 109.31222 * 54.63641 * 11 10 9 13 13 C 1.53045 * 109.53684 * 298.63630 * 12 11 10 14 14 C 1.46929 * 120.63384 * 210.93027 * 9 7 2 15 15 H 1.09004 * 109.58265 * 113.83944 * 14 9 7 16 16 C 1.52993 * 109.58441 * 353.41754 * 14 9 7 17 17 N 1.46492 * 109.47448 * 60.25717 * 16 14 9 18 18 C 1.34780 * 120.00286 * 180.02562 * 17 16 14 19 19 O 1.21614 * 119.99978 * 359.97438 * 18 17 16 20 20 C 1.47393 * 120.00268 * 180.02562 * 18 17 16 21 21 C 1.38206 * 126.46008 * 359.67733 * 20 18 17 22 22 N 1.34266 * 108.39471 * 179.87086 * 21 20 18 23 23 H 0.96998 * 125.38841 * 180.17399 * 22 21 20 24 24 C 1.37782 * 109.21437 * 0.40929 * 22 21 20 25 25 C 1.46812 * 125.84732 * 179.72696 * 24 22 21 26 26 N 1.34779 * 119.99994 * 0.02634 * 25 24 22 27 27 O 1.21677 * 119.99982 * 180.02562 * 25 24 22 28 28 C 1.36347 * 108.30229 * 359.74620 * 24 22 21 29 29 H 0.97003 * 119.99841 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.59041 * 246.16024 * 10 9 7 31 31 H 1.08999 * 109.58318 * 6.44263 * 10 9 7 32 32 H 1.08994 * 109.49787 * 174.59189 * 11 10 9 33 33 H 1.09007 * 109.49470 * 294.65448 * 11 10 9 34 34 H 1.09004 * 109.46230 * 58.65179 * 12 11 10 35 35 H 1.08997 * 109.46472 * 178.62797 * 12 11 10 36 36 H 1.09002 * 109.49557 * 181.31209 * 13 12 11 37 37 H 1.08996 * 109.49769 * 301.37695 * 13 12 11 38 38 H 1.08999 * 109.47188 * 180.26164 * 16 14 9 39 39 H 1.09002 * 109.47200 * 300.25470 * 16 14 9 40 40 H 0.97001 * 120.00453 * 359.97438 * 17 16 14 41 41 H 1.08001 * 125.80546 * 0.02562 * 21 20 18 42 42 H 0.97000 * 119.99602 * 359.97438 * 26 25 24 43 43 H 0.96998 * 119.99940 * 179.97438 * 26 25 24 44 44 H 1.08004 * 126.49493 * 180.02562 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5227 2.0320 1.3997 5 1 3.5351 1.4475 -0.7248 6 1 1.4354 2.6598 -0.6750 7 6 2.0103 -1.2021 0.0005 8 1 1.5054 -2.1173 -0.2712 9 7 3.3352 -1.2277 0.3456 10 6 3.8743 -0.2669 1.3178 11 6 4.5951 -1.0397 2.4269 12 6 5.6471 -1.9587 1.8019 13 6 4.9613 -2.9674 0.8776 14 6 4.2435 -2.2202 -0.2449 15 1 4.9782 -1.7154 -0.8723 16 6 3.4405 -3.2129 -1.0877 17 7 2.7484 -2.4948 -2.1607 18 6 1.9748 -3.1700 -3.0337 19 8 1.8517 -4.3755 -2.9310 20 6 1.2789 -2.4475 -4.1136 21 6 1.3199 -1.0865 -4.3505 22 7 0.5589 -0.8201 -5.4241 23 1 0.4162 0.0595 -5.8072 24 6 0.0086 -1.9934 -5.8922 25 6 -0.8879 -2.1216 -7.0477 26 7 -1.2388 -1.0280 -7.7529 27 8 -1.3141 -3.2152 -7.3687 28 6 0.4389 -3.0148 -5.0981 29 1 -0.4850 0.8401 -0.0004 30 1 4.5782 0.4003 0.8204 31 1 3.0588 0.3158 1.7461 32 1 5.0816 -0.3367 3.1030 33 1 3.8725 -1.6378 2.9822 34 1 6.3550 -1.3619 1.2266 35 1 6.1783 -2.4917 2.5905 36 1 5.7086 -3.6365 0.4510 37 1 4.2360 -3.5482 1.4473 38 1 4.1155 -3.9510 -1.5210 39 1 2.7084 -3.7166 -0.4565 40 1 2.8463 -1.5332 -2.2425 41 1 1.8723 -0.3608 -3.7720 42 1 -0.8994 -0.1562 -7.4968 43 1 -1.8309 -1.1128 -8.5166 44 1 0.1861 -4.0597 -5.2022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024797884.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:28 Heat of formation + Delta-G solvation = -36.115321 kcal Electronic energy + Delta-G solvation = -27561.167581 eV Core-core repulsion = 23706.404050 eV Total energy + Delta-G solvation = -3854.763531 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.57896 -40.56076 -39.91076 -39.21129 -35.69314 -34.90383 -34.81170 -32.77571 -32.48678 -32.03165 -30.45707 -27.72078 -26.39792 -24.27236 -24.22319 -23.77839 -22.13081 -21.31257 -21.04988 -20.41076 -20.01523 -18.44208 -17.96229 -17.45020 -17.19532 -16.85896 -16.62202 -16.39204 -16.29535 -15.46446 -15.25036 -15.15582 -15.07019 -14.74740 -14.65043 -14.58522 -14.34597 -14.17559 -13.65315 -13.54588 -13.37676 -13.14706 -12.86677 -12.46474 -12.23098 -11.90120 -11.63671 -11.53906 -11.50346 -11.23273 -11.15575 -10.86143 -10.83946 -10.56544 -10.20889 -9.77280 -9.37208 -8.72534 -7.98340 -5.37351 0.34575 0.83372 1.41573 1.48758 1.59326 1.92894 2.17676 2.31354 2.53573 2.58770 2.73435 3.15610 3.38937 3.90866 3.93436 3.96225 4.07996 4.12038 4.21678 4.28373 4.37287 4.48317 4.57899 4.66520 4.71331 4.86033 4.91188 4.92300 4.99764 5.10541 5.19999 5.28814 5.34591 5.36530 5.37665 5.53688 5.65114 5.74138 5.77943 6.03374 6.22777 6.35336 6.43211 6.85609 7.03717 7.15704 7.49338 7.75102 8.16139 9.19774 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016661 B = 0.003933 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.157869 B = 7117.380793 C = 8274.300310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.024 4.024 3 Si 0.941 3.059 4 H -0.292 1.292 5 H -0.247 1.247 6 H -0.315 1.315 7 C -0.230 4.230 8 H 0.054 0.946 9 N -0.616 5.616 10 C 0.118 3.882 11 C -0.133 4.133 12 C -0.102 4.102 13 C -0.127 4.127 14 C 0.165 3.835 15 H 0.059 0.941 16 C 0.138 3.862 17 N -0.686 5.686 18 C 0.578 3.422 19 O -0.607 6.607 20 C -0.254 4.254 21 C 0.110 3.890 22 N -0.498 5.498 23 H 0.442 0.558 24 C -0.068 4.068 25 C 0.599 3.401 26 N -0.827 5.827 27 O -0.578 6.578 28 C -0.072 4.072 29 H 0.257 0.743 30 H 0.038 0.962 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.046 0.954 38 H 0.076 0.924 39 H 0.033 0.967 40 H 0.410 0.590 41 H 0.205 0.795 42 H 0.414 0.586 43 H 0.419 0.581 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.117 6.324 -9.630 14.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.219 4.219 3 Si 0.771 3.229 4 H -0.220 1.220 5 H -0.171 1.171 6 H -0.244 1.244 7 C -0.360 4.360 8 H 0.072 0.928 9 N -0.342 5.342 10 C -0.006 4.006 11 C -0.172 4.172 12 C -0.140 4.140 13 C -0.166 4.166 14 C 0.060 3.940 15 H 0.077 0.923 16 C 0.014 3.986 17 N -0.335 5.335 18 C 0.367 3.633 19 O -0.492 6.492 20 C -0.263 4.263 21 C -0.034 4.034 22 N -0.095 5.095 23 H 0.285 0.715 24 C -0.180 4.180 25 C 0.385 3.615 26 N -0.391 5.391 27 O -0.458 6.458 28 C -0.099 4.099 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.051 0.949 40 H 0.247 0.753 41 H 0.222 0.778 42 H 0.246 0.754 43 H 0.252 0.748 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.680 4.963 -9.772 13.981 hybrid contribution -0.629 1.761 0.176 1.878 sum 8.051 6.725 -9.596 14.217 Atomic orbital electron populations 1.70000 1.07541 1.26663 1.56027 1.25840 0.95389 1.00296 1.00365 0.86047 0.78928 0.80627 0.77343 1.21982 1.17065 1.24447 1.18750 0.84710 0.92999 1.39546 0.92838 1.44538 1.05754 1.37044 1.46830 1.21458 0.96362 0.92201 0.90606 1.21947 0.98279 0.99220 0.97725 1.21360 0.96861 0.96967 0.98791 1.21856 0.99428 0.98187 0.97160 1.20853 0.90969 0.89104 0.93103 0.92303 1.21253 0.94717 0.94505 0.88111 1.45667 1.47627 1.11782 1.28435 1.17736 0.78160 0.86078 0.81298 1.90671 1.65957 1.16237 1.76289 1.19639 1.10118 0.94364 1.02191 1.22740 0.95334 0.95863 0.89447 1.41477 1.35682 1.09306 1.23059 0.71531 1.19782 1.08849 0.86665 1.02679 1.16966 0.78927 0.84654 0.80930 1.43407 1.52564 1.09139 1.34022 1.90875 1.56748 1.28278 1.69889 1.21035 0.96372 0.98942 0.93552 0.93413 0.94375 0.93741 0.90664 0.93655 0.91106 0.90574 0.89459 0.93475 0.90623 0.94902 0.75263 0.77787 0.75449 0.74810 0.84846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.44 13.97 21.65 0.30 -55.14 16 2 C -0.02 -1.25 5.27 84.86 0.45 -0.80 16 3 Si 0.94 40.51 24.32 68.60 1.67 42.18 16 4 H -0.29 -12.70 6.51 99.48 0.65 -12.05 16 5 H -0.25 -9.51 6.74 99.48 0.67 -8.84 16 6 H -0.32 -13.91 7.11 99.48 0.71 -13.21 16 7 C -0.23 -11.43 7.44 84.03 0.62 -10.81 16 8 H 0.05 3.10 6.04 -2.91 -0.02 3.09 16 9 N -0.62 -25.00 2.72 -676.03 -1.84 -26.84 16 10 C 0.12 4.41 4.20 86.36 0.36 4.78 16 11 C -0.13 -4.00 6.08 30.67 0.19 -3.81 16 12 C -0.10 -2.51 5.89 30.62 0.18 -2.33 16 13 C -0.13 -3.52 5.34 30.53 0.16 -3.35 16 14 C 0.16 5.47 2.99 44.83 0.13 5.60 16 15 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 16 C 0.14 5.11 4.42 86.38 0.38 5.49 16 17 N -0.69 -26.15 3.83 -466.42 -1.79 -27.93 16 18 C 0.58 24.30 7.81 86.65 0.68 24.97 16 19 O -0.61 -30.04 16.92 -4.08 -0.07 -30.11 16 20 C -0.25 -9.07 6.13 -20.12 -0.12 -9.19 16 21 C 0.11 2.88 11.43 84.31 0.96 3.85 16 22 N -0.50 -9.77 5.91 -183.35 -1.08 -10.85 16 23 H 0.44 4.09 8.14 -92.71 -0.75 3.34 16 24 C -0.07 -1.85 6.99 40.01 0.28 -1.57 16 25 C 0.60 15.15 8.06 86.49 0.70 15.85 16 26 N -0.83 -10.65 8.87 -176.30 -1.56 -12.21 16 27 O -0.58 -20.15 17.69 -4.28 -0.08 -20.22 16 28 C -0.07 -2.57 10.37 22.58 0.23 -2.33 16 29 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 30 H 0.04 1.33 7.05 -2.39 -0.02 1.31 16 31 H 0.04 1.91 4.64 -2.39 -0.01 1.89 16 32 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 2.51 8.14 -2.39 -0.02 2.50 16 39 H 0.03 1.45 7.42 -2.39 -0.02 1.43 16 40 H 0.41 14.70 6.30 -92.71 -0.58 14.12 16 41 H 0.21 4.43 7.44 -2.91 -0.02 4.41 16 42 H 0.41 2.29 7.91 -92.71 -0.73 1.55 16 43 H 0.42 4.14 8.93 -92.71 -0.83 3.31 16 44 H 0.13 5.21 8.06 -2.91 -0.02 5.18 16 Total: -1.00 -80.46 352.38 -1.15 -81.61 By element: Atomic # 1 Polarization: 35.09 SS G_CDS: -1.91 Total: 33.18 kcal Atomic # 6 Polarization: 21.13 SS G_CDS: 5.21 Total: 26.34 kcal Atomic # 7 Polarization: -127.00 SS G_CDS: -5.97 Total: -132.97 kcal Atomic # 8 Polarization: -50.19 SS G_CDS: -0.14 Total: -50.33 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 1.67 Total: 42.18 kcal Total: -80.46 -1.15 -81.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024797884.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.493 kcal (2) G-P(sol) polarization free energy of solvation -80.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds