Wall clock time and date at job start Tue Mar 31 2020 12:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 119.99969 * 2 1 4 4 H 1.48504 * 109.47171 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47284 * 299.99325 * 3 2 1 6 6 H 1.48502 * 109.47583 * 59.99705 * 3 2 1 7 7 C 1.38813 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00120 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99668 * 0.02562 * 7 2 1 10 10 C 1.47422 * 125.65048 * 350.39313 * 9 7 2 11 11 C 1.54912 * 104.83337 * 204.16481 * 10 9 7 12 12 C 1.55401 * 101.66819 * 323.07809 * 11 10 9 13 13 C 1.47027 * 125.64671 * 170.43735 * 9 7 2 14 14 H 1.08996 * 109.88123 * 59.32715 * 13 9 7 15 15 C 1.53002 * 109.88068 * 298.32118 * 13 9 7 16 16 H 1.08997 * 109.70533 * 57.89668 * 15 13 9 17 17 C 1.53196 * 109.58495 * 297.53874 * 15 13 9 18 18 C 1.53039 * 109.33615 * 185.59562 * 17 15 13 19 19 C 1.53042 * 109.54067 * 61.35186 * 18 17 15 20 20 C 1.53192 * 109.30999 * 298.63372 * 19 18 17 21 21 N 1.46924 * 108.77833 * 54.63282 * 20 19 18 22 22 C 1.34783 * 120.63257 * 126.43399 * 21 20 19 23 23 O 1.21494 * 119.99842 * 173.59052 * 22 21 20 24 24 C 1.48273 * 119.99746 * 353.59000 * 22 21 20 25 25 C 1.47489 * 128.71065 * 186.30567 * 24 22 21 26 26 N 1.30653 * 102.71619 * 179.85467 * 25 24 22 27 27 O 1.20837 * 109.61733 * 0.42290 * 26 25 24 28 28 N 1.20904 * 115.90940 * 359.69533 * 27 26 25 29 29 H 0.96999 * 120.00424 * 0.02562 * 1 2 3 30 30 H 1.08996 * 110.36586 * 323.00436 * 10 9 7 31 31 H 1.08999 * 110.36959 * 85.21941 * 10 9 7 32 32 H 1.09008 * 111.00058 * 81.06389 * 11 10 9 33 33 H 1.08999 * 111.00923 * 204.91344 * 11 10 9 34 34 H 1.09001 * 110.69395 * 277.04774 * 12 11 10 35 35 H 1.08996 * 110.85900 * 153.69558 * 12 11 10 36 36 H 1.09001 * 109.49555 * 65.62817 * 17 15 13 37 37 H 1.09000 * 109.49835 * 305.56266 * 17 15 13 38 38 H 1.09000 * 109.45997 * 181.36978 * 18 17 15 39 39 H 1.08998 * 109.45880 * 301.34091 * 18 17 15 40 40 H 1.08999 * 109.49762 * 58.57875 * 19 18 17 41 41 H 1.09001 * 109.50092 * 178.68487 * 19 18 17 42 42 H 1.08996 * 109.58954 * 174.42265 * 20 19 18 43 43 H 1.09003 * 109.58636 * 294.84533 * 20 19 18 44 44 H 1.07997 * 128.64323 * 359.97222 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1271 -2.5415 0.1999 11 6 -0.3047 -3.9878 0.7255 12 6 0.7765 -4.7526 -0.0876 13 6 1.9174 -3.7193 -0.1974 14 1 2.6659 -3.9102 0.5716 15 6 2.5623 -3.8012 -1.5825 16 1 3.3178 -3.0220 -1.6828 17 6 1.4891 -3.6179 -2.6602 18 6 2.1134 -3.8393 -4.0399 19 6 2.6534 -5.2681 -4.1341 20 6 3.7403 -5.4699 -3.0735 21 7 3.1883 -5.1189 -1.7579 22 6 3.2552 -5.9890 -0.7307 23 8 2.9019 -5.6459 0.3799 24 6 3.7600 -7.3648 -0.9563 25 6 3.7972 -8.4995 -0.0149 26 7 4.3318 -9.4513 -0.7327 27 8 4.5811 -9.0339 -1.8390 28 7 4.2924 -7.8780 -2.0449 29 1 -0.4851 0.8400 -0.0004 30 1 -0.4868 -1.8233 0.9367 31 1 -0.6555 -2.4118 -0.7446 32 1 -0.0985 -4.0431 1.7945 33 1 -1.3024 -4.3652 0.5016 34 1 0.3998 -5.0176 -1.0755 35 1 1.1105 -5.6402 0.4497 36 1 1.0839 -2.6077 -2.6021 37 1 0.6884 -4.3406 -2.5030 38 1 1.3571 -3.6854 -4.8096 39 1 2.9299 -3.1323 -4.1866 40 1 1.8421 -5.9757 -3.9627 41 1 3.0769 -5.4325 -5.1249 42 1 4.0583 -6.5124 -3.0700 43 1 4.5917 -4.8267 -3.2960 44 1 3.4637 -8.5354 1.0116 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025285672.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:47 Heat of formation + Delta-G solvation = 154.699272 kcal Electronic energy + Delta-G solvation = -29085.880923 eV Core-core repulsion = 25239.391734 eV Total energy + Delta-G solvation = -3846.489189 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -47.06009 -40.72935 -37.52882 -36.85971 -34.98316 -34.64656 -32.63881 -32.50816 -31.12509 -29.21523 -27.48453 -26.17282 -24.82725 -24.39374 -23.83107 -22.83653 -21.14297 -20.48175 -19.77677 -19.19494 -18.72562 -18.30247 -17.34537 -16.53300 -15.62096 -15.47673 -15.11378 -14.74516 -14.60920 -14.23439 -14.07379 -13.76331 -13.50598 -13.23664 -13.00576 -12.80840 -12.36478 -11.97865 -11.78380 -11.61869 -11.54594 -11.40120 -11.25163 -10.95324 -10.90977 -10.80991 -10.60703 -10.59364 -10.25037 -10.08885 -10.01360 -9.71821 -9.59859 -9.47461 -9.04111 -8.55477 -8.23779 -6.71189 -5.67916 -3.02998 0.62407 1.17109 2.57576 2.97514 3.29355 3.32068 3.39820 3.46416 3.48057 3.78027 4.44411 4.52651 4.61483 4.95475 5.00760 5.13742 5.18165 5.35689 5.43589 5.52727 5.61304 5.68346 5.81866 5.85013 5.95040 6.00923 6.03411 6.05726 6.13201 6.32151 6.39000 6.45306 6.54231 6.69205 6.77947 6.88059 6.95960 6.96854 7.39343 7.45697 7.65422 7.66866 7.89055 8.08718 8.27648 8.37675 9.25802 9.87804 10.56516 11.41576 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018585 B = 0.004294 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.207766 B = 6519.121064 C = 6983.885253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.222 4.222 8 H 0.074 0.926 9 N -0.594 5.594 10 C 0.170 3.830 11 C -0.149 4.149 12 C -0.129 4.129 13 C 0.160 3.840 14 H 0.077 0.923 15 C 0.136 3.864 16 H 0.077 0.923 17 C -0.122 4.122 18 C -0.122 4.122 19 C -0.129 4.129 20 C 0.078 3.922 21 N -0.581 5.581 22 C 0.582 3.418 23 O -0.484 6.484 24 C -0.023 4.023 25 C 0.032 3.968 26 N -0.356 5.356 27 O 0.326 5.674 28 N -0.326 5.326 29 H 0.250 0.750 30 H 0.079 0.921 31 H 0.017 0.983 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.115 0.885 43 H 0.070 0.930 44 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.687 -15.862 -5.970 17.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.202 4.202 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.351 4.351 8 H 0.092 0.908 9 N -0.318 5.318 10 C 0.045 3.955 11 C -0.188 4.188 12 C -0.167 4.167 13 C 0.053 3.947 14 H 0.095 0.905 15 C 0.033 3.967 16 H 0.095 0.905 17 C -0.160 4.160 18 C -0.160 4.160 19 C -0.167 4.167 20 C -0.045 4.045 21 N -0.314 5.314 22 C 0.366 3.634 23 O -0.357 6.357 24 C -0.189 4.189 25 C -0.153 4.153 26 N -0.079 5.079 27 O 0.106 5.894 28 N -0.052 5.052 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.035 0.965 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.132 0.868 43 H 0.088 0.912 44 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 5.942 -16.078 -6.206 18.230 hybrid contribution 0.039 1.500 0.372 1.546 sum 5.981 -14.578 -5.834 16.802 Atomic orbital electron populations 1.69946 1.04846 1.24722 1.57042 1.24791 0.95606 0.97506 1.02342 0.86130 0.78818 0.84151 0.77201 1.20583 1.21863 1.21848 1.19038 0.90348 0.82480 1.43218 0.90822 1.44691 1.03797 1.00533 1.82783 1.21506 0.84603 0.90896 0.98486 1.23052 0.96866 0.99567 0.99307 1.23119 0.95905 0.98450 0.99200 1.21674 0.95105 0.85939 0.92027 0.90541 1.22358 0.94687 0.80169 0.99477 0.90518 1.21927 0.97688 1.04008 0.92411 1.21582 1.00469 0.95745 0.98186 1.21866 0.98474 0.98138 0.98232 1.22464 0.96288 1.03625 0.82148 1.48176 1.56777 1.16504 1.09940 1.16701 0.80145 0.80930 0.85654 1.90861 1.46420 1.74931 1.23536 1.26744 1.03057 0.99771 0.89321 1.27732 0.98648 0.85787 1.03124 1.75045 1.15036 1.24051 0.93732 1.85080 1.58146 1.20206 1.25987 1.75184 1.12984 0.94571 1.22465 0.93899 0.90305 0.96511 0.92534 0.93092 0.92816 0.90240 0.88899 0.91822 0.92077 0.91972 0.91934 0.91085 0.86829 0.91220 0.75713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.36 10.38 55.49 0.58 -25.78 16 2 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 3 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.22 -5.99 9.80 -15.06 -0.15 -6.14 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.59 -14.66 2.61 -162.57 -0.43 -15.09 16 10 C 0.17 4.12 5.53 -2.53 -0.01 4.11 16 11 C -0.15 -2.99 7.09 -24.45 -0.17 -3.16 16 12 C -0.13 -2.43 4.95 -24.76 -0.12 -2.55 16 13 C 0.16 3.33 2.29 -66.95 -0.15 3.18 16 14 H 0.08 1.76 5.84 -52.38 -0.31 1.45 16 15 C 0.14 2.46 2.67 -67.59 -0.18 2.28 16 16 H 0.08 1.52 7.94 -51.93 -0.41 1.11 16 17 C -0.12 -2.10 4.96 -26.61 -0.13 -2.23 16 18 C -0.12 -1.66 5.88 -26.69 -0.16 -1.81 16 19 C -0.13 -1.48 6.08 -26.61 -0.16 -1.64 16 20 C 0.08 0.95 6.35 -3.71 -0.02 0.93 16 21 N -0.58 -8.72 2.94 -166.16 -0.49 -9.21 16 22 C 0.58 8.72 6.89 -12.13 -0.08 8.64 16 23 O -0.48 -8.40 10.32 5.37 0.06 -8.34 16 24 C -0.02 -0.28 7.26 -80.07 -0.58 -0.87 16 25 C 0.03 0.32 12.63 -14.28 -0.18 0.14 16 26 N -0.36 -3.67 12.22 30.72 0.38 -3.30 16 27 O 0.33 3.38 11.65 27.27 0.32 3.70 16 28 N -0.33 -3.64 8.87 33.49 0.30 -3.35 16 29 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.08 2.16 6.55 -51.93 -0.34 1.82 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.98 5.42 -51.93 -0.28 0.69 16 35 H 0.08 1.45 5.61 -51.96 -0.29 1.16 16 36 H 0.09 1.93 7.88 -51.93 -0.41 1.52 16 37 H 0.06 1.10 5.69 -51.93 -0.30 0.80 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.11 1.29 3.86 -66.13 -0.26 1.04 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.23 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 335.87 15.07 5.06 5.06 Total: -1.00 -29.13 335.87 -7.40 -36.53 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -5.94 Total: 2.37 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -2.21 Total: 0.61 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 0.34 Total: -56.73 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: 0.37 Total: -4.65 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.13 -7.40 -36.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025285672.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.232 kcal (2) G-P(sol) polarization free energy of solvation -29.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds