Wall clock time and date at job start Tue Mar 31 2020 12:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 119.99969 * 2 1 4 4 H 1.48504 * 109.47171 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47284 * 299.99325 * 3 2 1 6 6 H 1.48502 * 109.47583 * 59.99705 * 3 2 1 7 7 C 1.38813 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00120 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99668 * 0.02562 * 7 2 1 10 10 C 1.47422 * 125.65048 * 350.39313 * 9 7 2 11 11 C 1.54912 * 104.83337 * 204.16481 * 10 9 7 12 12 C 1.55401 * 101.66819 * 323.07809 * 11 10 9 13 13 C 1.47027 * 125.64671 * 170.43735 * 9 7 2 14 14 H 1.08996 * 109.88123 * 59.32715 * 13 9 7 15 15 C 1.53002 * 109.88068 * 298.32118 * 13 9 7 16 16 H 1.08997 * 109.70533 * 57.89668 * 15 13 9 17 17 C 1.53196 * 109.58495 * 297.53874 * 15 13 9 18 18 C 1.53039 * 109.33615 * 185.59562 * 17 15 13 19 19 C 1.53042 * 109.54067 * 61.35186 * 18 17 15 20 20 C 1.53192 * 109.30999 * 298.63372 * 19 18 17 21 21 N 1.46924 * 108.77833 * 54.63282 * 20 19 18 22 22 C 1.34783 * 120.63257 * 126.43399 * 21 20 19 23 23 O 1.21494 * 119.99842 * 173.59052 * 22 21 20 24 24 C 1.48273 * 119.99746 * 353.59000 * 22 21 20 25 25 C 1.47489 * 128.71065 * 186.30567 * 24 22 21 26 26 N 1.30653 * 102.71619 * 179.85467 * 25 24 22 27 27 O 1.20837 * 109.61733 * 0.42290 * 26 25 24 28 28 N 1.20904 * 115.90940 * 359.69533 * 27 26 25 29 29 H 0.96999 * 120.00424 * 0.02562 * 1 2 3 30 30 H 1.08996 * 110.36586 * 323.00436 * 10 9 7 31 31 H 1.08999 * 110.36959 * 85.21941 * 10 9 7 32 32 H 1.09008 * 111.00058 * 81.06389 * 11 10 9 33 33 H 1.08999 * 111.00923 * 204.91344 * 11 10 9 34 34 H 1.09001 * 110.69395 * 277.04774 * 12 11 10 35 35 H 1.08996 * 110.85900 * 153.69558 * 12 11 10 36 36 H 1.09001 * 109.49555 * 65.62817 * 17 15 13 37 37 H 1.09000 * 109.49835 * 305.56266 * 17 15 13 38 38 H 1.09000 * 109.45997 * 181.36978 * 18 17 15 39 39 H 1.08998 * 109.45880 * 301.34091 * 18 17 15 40 40 H 1.08999 * 109.49762 * 58.57875 * 19 18 17 41 41 H 1.09001 * 109.50092 * 178.68487 * 19 18 17 42 42 H 1.08996 * 109.58954 * 174.42265 * 20 19 18 43 43 H 1.09003 * 109.58636 * 294.84533 * 20 19 18 44 44 H 1.07997 * 128.64323 * 359.97222 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1271 -2.5415 0.1999 11 6 -0.3047 -3.9878 0.7255 12 6 0.7765 -4.7526 -0.0876 13 6 1.9174 -3.7193 -0.1974 14 1 2.6659 -3.9102 0.5716 15 6 2.5623 -3.8012 -1.5825 16 1 3.3178 -3.0220 -1.6828 17 6 1.4891 -3.6179 -2.6602 18 6 2.1134 -3.8393 -4.0399 19 6 2.6534 -5.2681 -4.1341 20 6 3.7403 -5.4699 -3.0735 21 7 3.1883 -5.1189 -1.7579 22 6 3.2552 -5.9890 -0.7307 23 8 2.9019 -5.6459 0.3799 24 6 3.7600 -7.3648 -0.9563 25 6 3.7972 -8.4995 -0.0149 26 7 4.3318 -9.4513 -0.7327 27 8 4.5811 -9.0339 -1.8390 28 7 4.2924 -7.8780 -2.0449 29 1 -0.4851 0.8400 -0.0004 30 1 -0.4868 -1.8233 0.9367 31 1 -0.6555 -2.4118 -0.7446 32 1 -0.0985 -4.0431 1.7945 33 1 -1.3024 -4.3652 0.5016 34 1 0.3998 -5.0176 -1.0755 35 1 1.1105 -5.6402 0.4497 36 1 1.0839 -2.6077 -2.6021 37 1 0.6884 -4.3406 -2.5030 38 1 1.3571 -3.6854 -4.8096 39 1 2.9299 -3.1323 -4.1866 40 1 1.8421 -5.9757 -3.9627 41 1 3.0769 -5.4325 -5.1249 42 1 4.0583 -6.5124 -3.0700 43 1 4.5917 -4.8267 -3.2960 44 1 3.4637 -8.5354 1.0116 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025285672.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:47 Heat of formation + Delta-G solvation = 138.149099 kcal Electronic energy + Delta-G solvation = -29086.598592 eV Core-core repulsion = 25239.391734 eV Total energy + Delta-G solvation = -3847.206859 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -47.92405 -42.04247 -38.99237 -38.25483 -35.94218 -35.55536 -34.45771 -33.80624 -32.52699 -31.13320 -28.88067 -27.38638 -26.49001 -25.78001 -24.79773 -24.19265 -22.37734 -21.94979 -21.43180 -20.06313 -20.03907 -19.25182 -18.94904 -17.95676 -17.09290 -16.97224 -16.43591 -16.25400 -15.86510 -15.67794 -15.25193 -15.20467 -14.83005 -14.53693 -14.37928 -13.93656 -13.78997 -13.54838 -13.28015 -13.16005 -12.91844 -12.79718 -12.67603 -12.56776 -12.38280 -12.02070 -11.99137 -11.92496 -11.82976 -11.69621 -11.50677 -11.26151 -11.22021 -11.09116 -10.71959 -10.46148 -9.56982 -8.72316 -7.78978 -5.15300 -0.32447 0.36120 1.44119 1.45375 1.47541 1.55963 1.84299 2.33845 2.49181 2.52213 2.85998 3.33652 3.46835 3.73601 3.77997 3.87042 3.92369 3.97325 4.07893 4.20091 4.30378 4.34568 4.39678 4.48884 4.56939 4.64414 4.77241 4.87134 4.89179 4.97157 5.03870 5.06111 5.19815 5.22151 5.24414 5.28444 5.47374 5.50685 5.55088 5.71294 5.78032 5.83366 6.21998 6.32662 6.89275 7.16291 7.41508 7.85337 8.52599 9.29599 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018585 B = 0.004294 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.207766 B = 6519.121064 C = 6983.885253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.059 4.059 3 Si 0.968 3.032 4 H -0.269 1.269 5 H -0.292 1.292 6 H -0.295 1.295 7 C -0.227 4.227 8 H 0.072 0.928 9 N -0.609 5.609 10 C 0.178 3.822 11 C -0.139 4.139 12 C -0.113 4.113 13 C 0.158 3.842 14 H 0.058 0.942 15 C 0.149 3.851 16 H 0.053 0.947 17 C -0.112 4.112 18 C -0.117 4.117 19 C -0.120 4.120 20 C 0.076 3.924 21 N -0.583 5.583 22 C 0.583 3.417 23 O -0.514 6.514 24 C -0.041 4.041 25 C 0.049 3.951 26 N -0.359 5.359 27 O 0.339 5.661 28 N -0.320 5.320 29 H 0.245 0.755 30 H 0.041 0.959 31 H -0.006 1.006 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.048 0.952 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.102 0.898 42 H 0.128 0.872 43 H 0.076 0.924 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.895 -18.301 -7.121 20.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.252 4.252 3 Si 0.797 3.203 4 H -0.194 1.194 5 H -0.219 1.219 6 H -0.222 1.222 7 C -0.356 4.356 8 H 0.090 0.910 9 N -0.334 5.334 10 C 0.052 3.948 11 C -0.177 4.177 12 C -0.150 4.150 13 C 0.052 3.948 14 H 0.075 0.925 15 C 0.044 3.956 16 H 0.071 0.929 17 C -0.150 4.150 18 C -0.155 4.155 19 C -0.158 4.158 20 C -0.046 4.046 21 N -0.316 5.316 22 C 0.369 3.631 23 O -0.389 6.389 24 C -0.205 4.205 25 C -0.136 4.136 26 N -0.082 5.082 27 O 0.116 5.884 28 N -0.043 5.043 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.012 0.988 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.112 0.888 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.121 0.879 42 H 0.145 0.855 43 H 0.094 0.906 44 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 7.183 -18.543 -7.389 21.214 hybrid contribution -0.264 2.165 0.741 2.304 sum 6.918 -16.377 -6.648 18.981 Atomic orbital electron populations 1.70150 1.06102 1.24845 1.58442 1.25503 0.96399 1.00431 1.02902 0.85161 0.78202 0.80269 0.76647 1.19406 1.21896 1.22218 1.19278 0.90488 0.83705 1.42169 0.91039 1.44877 1.04072 1.01429 1.83059 1.21253 0.84343 0.92763 0.96399 1.22945 0.98839 0.96718 0.99210 1.23026 0.94382 0.98017 0.99616 1.21701 0.95410 0.84578 0.93135 0.92483 1.21796 0.94268 0.81475 0.98025 0.92912 1.21751 0.97416 1.01278 0.94605 1.21547 1.00596 0.97501 0.95867 1.21838 0.98247 0.96192 0.99555 1.22690 0.96702 1.04502 0.80734 1.48127 1.56718 1.15320 1.11396 1.16919 0.79367 0.81814 0.85014 1.90833 1.47820 1.75791 1.24468 1.26248 1.04784 0.98848 0.90619 1.28131 0.97250 0.84453 1.03733 1.75093 1.15482 1.24014 0.93655 1.85086 1.57622 1.19606 1.26117 1.75107 1.12179 0.94857 1.22141 0.94561 0.94024 0.98801 0.92653 0.90508 0.91908 0.88835 0.93292 0.91843 0.90860 0.92149 0.91747 0.87925 0.85497 0.90576 0.73203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.72 10.38 21.65 0.22 -56.49 16 2 C -0.06 -3.36 5.48 84.86 0.46 -2.90 16 3 Si 0.97 46.10 29.55 68.60 2.03 48.13 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 7 C -0.23 -12.70 9.80 84.03 0.82 -11.87 16 8 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.61 -31.31 2.61 -668.26 -1.75 -33.06 16 10 C 0.18 8.98 5.53 86.86 0.48 9.46 16 11 C -0.14 -5.54 7.09 32.07 0.23 -5.32 16 12 C -0.11 -4.19 4.95 31.87 0.16 -4.03 16 13 C 0.16 6.70 2.29 45.34 0.10 6.81 16 14 H 0.06 2.69 5.84 -10.30 -0.06 2.63 16 15 C 0.15 5.43 2.67 44.97 0.12 5.55 16 16 H 0.05 2.17 7.94 -2.39 -0.02 2.15 16 17 C -0.11 -3.88 4.96 30.67 0.15 -3.73 16 18 C -0.12 -3.01 5.88 30.62 0.18 -2.83 16 19 C -0.12 -2.39 6.08 30.67 0.19 -2.20 16 20 C 0.08 1.66 6.35 86.36 0.55 2.20 16 21 N -0.58 -16.81 2.94 -797.90 -2.34 -19.15 16 22 C 0.58 16.62 6.89 86.91 0.60 17.22 16 23 O -0.51 -17.39 10.32 -3.70 -0.04 -17.43 16 24 C -0.04 -0.88 7.26 44.29 0.32 -0.56 16 25 C 0.05 0.83 12.63 87.31 1.10 1.93 16 26 N -0.36 -6.28 12.22 -61.41 -0.75 -7.03 16 27 O 0.34 5.96 11.65 140.85 1.64 7.60 16 28 N -0.32 -6.18 8.87 -52.04 -0.46 -6.64 16 29 H 0.24 14.32 8.31 -92.71 -0.77 13.55 16 30 H 0.04 2.40 6.55 -2.39 -0.02 2.38 16 31 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 32 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 33 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.06 2.20 5.42 -2.39 -0.01 2.19 16 35 H 0.09 3.27 5.61 -3.59 -0.02 3.25 16 36 H 0.05 2.12 7.88 -2.39 -0.02 2.10 16 37 H 0.06 2.16 5.69 -2.39 -0.01 2.15 16 38 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.13 2.49 3.86 -28.83 -0.11 2.38 16 43 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.25 2.69 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -65.84 335.87 4.90 -60.95 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 0.88 Total: 13.39 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 5.47 Total: 9.74 kcal Atomic # 7 Polarization: -117.30 SS G_CDS: -5.08 Total: -122.38 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 1.60 Total: -9.83 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -65.84 4.90 -60.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025285672.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.094 kcal (2) G-P(sol) polarization free energy of solvation -65.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds