Wall clock time and date at job start Tue Mar 31 2020 12:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86806 * 120.00055 * 2 1 4 4 H 1.48502 * 109.46996 * 269.99920 * 3 2 1 5 5 H 1.48504 * 109.46756 * 29.99743 * 3 2 1 6 6 H 1.48497 * 109.46870 * 149.99584 * 3 2 1 7 7 C 1.38811 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99682 * 0.02562 * 7 2 1 9 9 N 1.36932 * 120.00254 * 179.97438 * 7 2 1 10 10 C 1.46504 * 120.00287 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46883 * 85.00233 * 10 9 7 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.47060 * 300.00449 * 12 11 10 14 14 N 1.46499 * 109.46840 * 180.02562 * 13 12 11 15 15 C 1.34782 * 120.00074 * 155.00031 * 14 13 12 16 16 O 1.21677 * 119.99725 * 359.97438 * 15 14 13 17 17 C 1.46807 * 119.99809 * 180.02562 * 15 14 13 18 18 C 1.36353 * 125.84727 * 179.71761 * 17 15 14 19 19 C 1.41310 * 107.01338 * 179.84931 * 18 17 15 20 20 C 1.47385 * 126.46185 * 180.13513 * 19 18 17 21 21 N 1.34780 * 119.99837 * 180.30160 * 20 19 18 22 22 O 1.21608 * 120.00229 * 0.29586 * 20 19 18 23 23 C 1.38207 * 107.06784 * 0.40897 * 19 18 17 24 24 N 1.34255 * 108.39965 * 359.74609 * 23 19 18 25 25 H 0.97009 * 125.39260 * 180.02562 * 24 23 19 26 26 C 1.52996 * 109.47328 * 60.00126 * 13 12 11 27 27 C 1.52997 * 109.47417 * 205.00318 * 10 9 7 28 28 H 0.97001 * 120.00281 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00089 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.46891 * 325.00667 * 10 9 7 31 31 H 1.08998 * 109.46505 * 59.99948 * 11 10 9 32 32 H 1.08996 * 109.46884 * 300.00829 * 11 10 9 33 33 H 1.09002 * 109.47153 * 180.02562 * 12 11 10 34 34 H 1.09001 * 109.46832 * 60.00321 * 12 11 10 35 35 H 1.09001 * 109.47194 * 299.99650 * 13 12 11 36 36 H 0.97002 * 120.00427 * 334.99530 * 14 13 12 37 37 H 1.08007 * 126.49378 * 359.96596 * 18 17 15 38 38 H 0.97005 * 119.99761 * 359.97438 * 21 20 19 39 39 H 0.96995 * 120.00212 * 179.97438 * 21 20 19 40 40 H 1.08005 * 125.79548 * 179.77833 * 23 19 18 41 41 H 1.08992 * 109.47554 * 59.99639 * 26 13 12 42 42 H 1.09004 * 109.47108 * 179.97438 * 26 13 12 43 43 H 1.09002 * 109.47045 * 60.00127 * 27 10 9 44 44 H 1.09001 * 109.47375 * 300.00052 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3795 -1.2021 0.0000 10 6 4.1121 -2.4708 0.0011 11 6 4.2577 -2.9769 -1.4354 12 6 5.0222 -4.3022 -1.4343 13 6 6.4096 -4.0901 -0.8251 14 7 7.1418 -5.3590 -0.8245 15 6 8.4896 -5.3593 -0.8248 16 8 9.0982 -4.3057 -0.8260 17 6 9.2233 -6.6309 -0.8248 18 6 10.5797 -6.7702 -0.8306 19 6 10.8530 -8.1566 -0.8247 20 6 12.1853 -8.7867 -0.8250 21 7 12.2954 -10.1300 -0.8250 22 8 13.1853 -8.0947 -0.8252 23 6 9.6351 -8.8101 -0.8249 24 7 8.6594 -7.8880 -0.8250 25 1 7.7078 -8.0769 -0.8248 26 6 6.2639 -3.5841 0.6115 27 6 5.4995 -2.2582 0.6100 28 1 -0.4850 0.8400 -0.0004 29 1 3.8646 -0.3621 -0.0004 30 1 3.5649 -3.2058 0.5915 31 1 4.8048 -2.2419 -2.0258 32 1 3.2693 -3.1283 -1.8692 33 1 5.1264 -4.6625 -2.4577 34 1 4.4746 -5.0369 -0.8440 35 1 6.9572 -3.3554 -1.4153 36 1 6.6566 -6.1990 -0.8239 37 1 11.3073 -5.9721 -0.8364 38 1 11.4978 -10.6821 -0.8245 39 1 13.1723 -10.5448 -0.8256 40 1 9.4927 -9.8808 -0.8246 41 1 5.7164 -4.3188 1.2017 42 1 7.2524 -3.4335 1.0456 43 1 5.3957 -1.8977 1.6335 44 1 6.0467 -1.5233 0.0196 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026585063.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:09 Heat of formation + Delta-G solvation = -32.042038 kcal Electronic energy + Delta-G solvation = -25936.232090 eV Core-core repulsion = 22081.645190 eV Total energy + Delta-G solvation = -3854.586900 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.03374 -39.90316 -39.10108 -37.98235 -35.11597 -34.06990 -33.21166 -31.73939 -31.11770 -30.54917 -29.90855 -27.70932 -24.17384 -23.68296 -22.71121 -22.47193 -20.95085 -20.62975 -20.16883 -19.85889 -19.10581 -17.56988 -17.35681 -16.73591 -16.30934 -16.12980 -15.71764 -15.10106 -14.90581 -14.51499 -14.32998 -14.12580 -14.00547 -13.78668 -13.68794 -13.40052 -12.96107 -12.81179 -12.72058 -12.34370 -11.98541 -11.88145 -11.04240 -10.95929 -10.89546 -10.77558 -10.48408 -10.41218 -10.32557 -10.10623 -10.07653 -9.79888 -9.60079 -9.59087 -9.24349 -8.91444 -8.82630 -7.28074 -5.78551 -3.13841 0.97674 1.42362 2.42067 2.79964 2.96078 3.23598 3.26102 3.37930 3.41665 3.45789 4.26035 4.38467 4.49885 4.58634 4.73334 4.82635 4.91625 5.05830 5.33266 5.41158 5.43631 5.50772 5.52651 5.54144 5.68973 5.72494 5.87786 5.94451 6.05679 6.13567 6.16401 6.22897 6.24356 6.40311 6.42327 6.43172 6.55488 6.66088 6.83261 6.97257 6.98282 7.23020 7.91959 7.96359 7.97670 8.40831 9.19706 9.92708 10.12765 11.39735 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.042541 B = 0.002025 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.029827 B =13820.903783 C =14226.026878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.004 3.996 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.243 4.243 8 H 0.090 0.910 9 N -0.749 5.749 10 C 0.182 3.818 11 C -0.132 4.132 12 C -0.121 4.121 13 C 0.145 3.855 14 N -0.725 5.725 15 C 0.586 3.414 16 O -0.520 6.520 17 C -0.055 4.055 18 C -0.045 4.045 19 C -0.238 4.238 20 C 0.594 3.406 21 N -0.856 5.856 22 O -0.543 6.543 23 C 0.072 3.928 24 N -0.523 5.523 25 H 0.422 0.578 26 C -0.121 4.121 27 C -0.125 4.125 28 H 0.259 0.741 29 H 0.361 0.639 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.391 0.609 37 H 0.160 0.840 38 H 0.398 0.602 39 H 0.404 0.596 40 H 0.181 0.819 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.981 -24.908 -2.188 31.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.391 5.391 10 C 0.072 3.928 11 C -0.173 4.173 12 C -0.160 4.160 13 C 0.042 3.958 14 N -0.375 5.375 15 C 0.373 3.627 16 O -0.395 6.395 17 C -0.166 4.166 18 C -0.070 4.070 19 C -0.248 4.248 20 C 0.380 3.620 21 N -0.419 5.419 22 O -0.420 6.420 23 C -0.071 4.071 24 N -0.118 5.118 25 H 0.260 0.740 26 C -0.160 4.160 27 C -0.164 4.164 28 H 0.069 0.931 29 H 0.194 0.806 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.224 0.776 37 H 0.177 0.823 38 H 0.226 0.774 39 H 0.235 0.765 40 H 0.198 0.802 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 19.512 -23.498 -2.175 30.620 hybrid contribution -0.312 0.062 -0.038 0.321 sum 19.200 -23.435 -2.214 30.377 Atomic orbital electron populations 1.69696 1.05117 1.25831 1.57592 1.24673 0.95233 0.97243 1.02047 0.86556 0.79260 0.84961 0.77808 1.21098 1.21786 1.20251 1.19064 0.80626 0.94625 1.42967 0.89265 1.42798 1.03983 1.02098 1.90242 1.20213 0.90410 0.89161 0.92987 1.22191 0.99985 0.94316 1.00809 1.21812 0.93974 1.00029 1.00205 1.21181 0.92484 0.84541 0.97589 1.46057 1.05726 1.10047 1.75642 1.17038 0.81897 0.87071 0.76740 1.90887 1.67999 1.31021 1.49636 1.20242 0.93452 0.84168 1.18778 1.21129 0.93090 0.95575 0.97252 1.19600 0.91974 0.94278 1.18998 1.17394 0.87869 0.81892 0.74819 1.43680 1.12274 1.06946 1.79042 1.90845 1.38341 1.62768 1.50074 1.22393 0.87063 0.95118 1.02479 1.41761 1.09360 1.05685 1.54963 0.73973 1.21844 1.00563 0.97883 0.95730 1.21815 0.96601 0.96223 1.01740 0.93086 0.80625 0.92763 0.92379 0.90981 0.92046 0.91692 0.89091 0.77607 0.82283 0.77444 0.76546 0.80189 0.91866 0.91759 0.91442 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.06 13.97 55.49 0.78 -28.29 16 2 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 3 Si 0.88 22.09 27.74 -169.99 -4.71 17.37 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 7 C -0.24 -6.69 10.41 -15.06 -0.16 -6.85 16 8 H 0.09 2.62 8.06 -52.48 -0.42 2.19 16 9 N -0.75 -17.28 4.93 -53.42 -0.26 -17.54 16 10 C 0.18 3.28 2.77 -67.93 -0.19 3.10 16 11 C -0.13 -2.09 5.50 -26.73 -0.15 -2.24 16 12 C -0.12 -1.40 5.39 -26.73 -0.14 -1.54 16 13 C 0.15 1.71 2.45 -67.93 -0.17 1.54 16 14 N -0.72 -6.65 5.07 -55.07 -0.28 -6.93 16 15 C 0.59 6.74 7.76 -12.79 -0.10 6.64 16 16 O -0.52 -8.25 16.52 5.21 0.09 -8.16 16 17 C -0.06 -0.50 6.99 -82.41 -0.58 -1.08 16 18 C -0.04 -0.47 10.37 -39.09 -0.41 -0.88 16 19 C -0.24 -1.92 6.13 -105.02 -0.64 -2.56 16 20 C 0.59 5.33 8.09 -12.54 -0.10 5.23 16 21 N -0.86 -3.36 8.86 30.42 0.27 -3.09 16 22 O -0.54 -7.54 17.76 5.27 0.09 -7.45 16 23 C 0.07 0.28 11.43 -16.50 -0.19 0.09 16 24 N -0.52 -2.34 5.91 -9.31 -0.05 -2.40 16 25 H 0.42 0.50 8.14 -40.82 -0.33 0.17 16 26 C -0.12 -1.54 5.50 -26.71 -0.15 -1.69 16 27 C -0.12 -1.92 5.39 -26.71 -0.14 -2.07 16 28 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 29 H 0.36 8.31 5.66 -40.82 -0.23 8.08 16 30 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 1.26 7.57 -51.93 -0.39 0.87 16 36 H 0.39 2.21 7.68 -40.82 -0.31 1.89 16 37 H 0.16 1.92 8.06 -52.48 -0.42 1.49 16 38 H 0.40 0.14 7.74 -40.82 -0.32 -0.18 16 39 H 0.40 1.25 8.93 -40.82 -0.36 0.88 16 40 H 0.18 -0.16 7.44 -52.48 -0.39 -0.55 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 365.96 15.07 5.51 5.51 Total: -1.00 -38.58 365.96 -7.93 -46.52 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -6.16 Total: 6.75 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -3.20 Total: -2.30 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: 0.45 Total: -58.24 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: 0.18 Total: -15.61 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.71 Total: 17.37 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -38.58 -7.93 -46.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026585063.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.474 kcal (2) G-P(sol) polarization free energy of solvation -38.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds