Wall clock time and date at job start Tue Mar 31 2020 12:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86806 * 120.00055 * 2 1 4 4 H 1.48502 * 109.46996 * 269.99920 * 3 2 1 5 5 H 1.48504 * 109.46756 * 29.99743 * 3 2 1 6 6 H 1.48497 * 109.46870 * 149.99584 * 3 2 1 7 7 C 1.38811 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99682 * 0.02562 * 7 2 1 9 9 N 1.36932 * 120.00254 * 179.97438 * 7 2 1 10 10 C 1.46504 * 120.00287 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46883 * 85.00233 * 10 9 7 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.47060 * 300.00449 * 12 11 10 14 14 N 1.46499 * 109.46840 * 180.02562 * 13 12 11 15 15 C 1.34782 * 120.00074 * 155.00031 * 14 13 12 16 16 O 1.21677 * 119.99725 * 359.97438 * 15 14 13 17 17 C 1.46807 * 119.99809 * 180.02562 * 15 14 13 18 18 C 1.36353 * 125.84727 * 179.71761 * 17 15 14 19 19 C 1.41310 * 107.01338 * 179.84931 * 18 17 15 20 20 C 1.47385 * 126.46185 * 180.13513 * 19 18 17 21 21 N 1.34780 * 119.99837 * 180.30160 * 20 19 18 22 22 O 1.21608 * 120.00229 * 0.29586 * 20 19 18 23 23 C 1.38207 * 107.06784 * 0.40897 * 19 18 17 24 24 N 1.34255 * 108.39965 * 359.74609 * 23 19 18 25 25 H 0.97009 * 125.39260 * 180.02562 * 24 23 19 26 26 C 1.52996 * 109.47328 * 60.00126 * 13 12 11 27 27 C 1.52997 * 109.47417 * 205.00318 * 10 9 7 28 28 H 0.97001 * 120.00281 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00089 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.46891 * 325.00667 * 10 9 7 31 31 H 1.08998 * 109.46505 * 59.99948 * 11 10 9 32 32 H 1.08996 * 109.46884 * 300.00829 * 11 10 9 33 33 H 1.09002 * 109.47153 * 180.02562 * 12 11 10 34 34 H 1.09001 * 109.46832 * 60.00321 * 12 11 10 35 35 H 1.09001 * 109.47194 * 299.99650 * 13 12 11 36 36 H 0.97002 * 120.00427 * 334.99530 * 14 13 12 37 37 H 1.08007 * 126.49378 * 359.96596 * 18 17 15 38 38 H 0.97005 * 119.99761 * 359.97438 * 21 20 19 39 39 H 0.96995 * 120.00212 * 179.97438 * 21 20 19 40 40 H 1.08005 * 125.79548 * 179.77833 * 23 19 18 41 41 H 1.08992 * 109.47554 * 59.99639 * 26 13 12 42 42 H 1.09004 * 109.47108 * 179.97438 * 26 13 12 43 43 H 1.09002 * 109.47045 * 60.00127 * 27 10 9 44 44 H 1.09001 * 109.47375 * 300.00052 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3795 -1.2021 0.0000 10 6 4.1121 -2.4708 0.0011 11 6 4.2577 -2.9769 -1.4354 12 6 5.0222 -4.3022 -1.4343 13 6 6.4096 -4.0901 -0.8251 14 7 7.1418 -5.3590 -0.8245 15 6 8.4896 -5.3593 -0.8248 16 8 9.0982 -4.3057 -0.8260 17 6 9.2233 -6.6309 -0.8248 18 6 10.5797 -6.7702 -0.8306 19 6 10.8530 -8.1566 -0.8247 20 6 12.1853 -8.7867 -0.8250 21 7 12.2954 -10.1300 -0.8250 22 8 13.1853 -8.0947 -0.8252 23 6 9.6351 -8.8101 -0.8249 24 7 8.6594 -7.8880 -0.8250 25 1 7.7078 -8.0769 -0.8248 26 6 6.2639 -3.5841 0.6115 27 6 5.4995 -2.2582 0.6100 28 1 -0.4850 0.8400 -0.0004 29 1 3.8646 -0.3621 -0.0004 30 1 3.5649 -3.2058 0.5915 31 1 4.8048 -2.2419 -2.0258 32 1 3.2693 -3.1283 -1.8692 33 1 5.1264 -4.6625 -2.4577 34 1 4.4746 -5.0369 -0.8440 35 1 6.9572 -3.3554 -1.4153 36 1 6.6566 -6.1990 -0.8239 37 1 11.3073 -5.9721 -0.8364 38 1 11.4978 -10.6821 -0.8245 39 1 13.1723 -10.5448 -0.8256 40 1 9.4927 -9.8808 -0.8246 41 1 5.7164 -4.3188 1.2017 42 1 7.2524 -3.4335 1.0456 43 1 5.3957 -1.8977 1.6335 44 1 6.0467 -1.5233 0.0196 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026585063.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:08 Heat of formation + Delta-G solvation = -65.335822 kcal Electronic energy + Delta-G solvation = -25937.675816 eV Core-core repulsion = 22081.645190 eV Total energy + Delta-G solvation = -3856.030627 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.61890 -40.83466 -39.82504 -39.15780 -36.52246 -34.78238 -34.60922 -32.99195 -32.24322 -31.71343 -30.74283 -29.01111 -25.54929 -24.40563 -23.88292 -23.64300 -22.17150 -21.43302 -21.15638 -20.55559 -20.00211 -19.46623 -17.90988 -17.38529 -17.19204 -16.91726 -16.67857 -16.47479 -16.11987 -15.69170 -15.28650 -15.11968 -14.97719 -14.71594 -14.59090 -14.50250 -14.41996 -14.31802 -13.76042 -13.48482 -13.33527 -13.11518 -12.91137 -12.47640 -12.17877 -12.05799 -11.93039 -11.80662 -11.71874 -11.33700 -11.20063 -11.06561 -10.90468 -10.62449 -10.23067 -10.13952 -9.39715 -9.28734 -8.01224 -5.33242 0.38718 0.77859 1.38648 1.39922 1.47343 1.90616 2.06266 2.18157 2.48906 2.57778 2.79004 3.30449 3.55992 3.69161 3.82152 3.87197 3.90640 4.09179 4.18488 4.28847 4.31016 4.35623 4.50882 4.57429 4.62205 4.78936 4.83173 4.90093 4.93434 5.08534 5.11251 5.20707 5.27103 5.34524 5.39518 5.49810 5.55148 5.62016 5.79985 5.99334 6.23665 6.33485 6.50885 6.63170 7.09692 7.11215 7.47732 7.87728 8.05247 9.20138 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.042541 B = 0.002025 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.029827 B =13820.903783 C =14226.026878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.065 4.065 3 Si 0.949 3.051 4 H -0.281 1.281 5 H -0.298 1.298 6 H -0.255 1.255 7 C -0.222 4.222 8 H 0.062 0.938 9 N -0.756 5.756 10 C 0.175 3.825 11 C -0.126 4.126 12 C -0.107 4.107 13 C 0.152 3.848 14 N -0.705 5.705 15 C 0.586 3.414 16 O -0.574 6.574 17 C -0.068 4.068 18 C -0.074 4.074 19 C -0.271 4.271 20 C 0.588 3.412 21 N -0.829 5.829 22 O -0.609 6.609 23 C 0.127 3.873 24 N -0.501 5.501 25 H 0.443 0.557 26 C -0.112 4.112 27 C -0.117 4.117 28 H 0.256 0.744 29 H 0.362 0.638 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.413 0.587 37 H 0.124 0.876 38 H 0.419 0.581 39 H 0.410 0.590 40 H 0.244 0.756 41 H 0.080 0.920 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.419 -28.483 -2.277 34.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.256 4.256 3 Si 0.777 3.223 4 H -0.208 1.208 5 H -0.225 1.225 6 H -0.180 1.180 7 C -0.353 4.353 8 H 0.080 0.920 9 N -0.398 5.398 10 C 0.067 3.933 11 C -0.167 4.167 12 C -0.145 4.145 13 C 0.048 3.952 14 N -0.356 5.356 15 C 0.374 3.626 16 O -0.453 6.453 17 C -0.179 4.179 18 C -0.100 4.100 19 C -0.281 4.281 20 C 0.376 3.624 21 N -0.392 5.392 22 O -0.491 6.491 23 C -0.018 4.018 24 N -0.098 5.098 25 H 0.286 0.714 26 C -0.151 4.151 27 C -0.156 4.156 28 H 0.065 0.935 29 H 0.195 0.805 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.250 0.750 37 H 0.142 0.858 38 H 0.251 0.749 39 H 0.242 0.758 40 H 0.260 0.740 41 H 0.099 0.901 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 19.923 -27.202 -2.267 33.794 hybrid contribution -0.447 0.978 -0.008 1.075 sum 19.476 -26.224 -2.275 32.744 Atomic orbital electron populations 1.69863 1.06951 1.26449 1.60190 1.25434 0.96048 1.00964 1.03202 0.85488 0.78631 0.80230 0.77913 1.20768 1.22451 1.17983 1.19047 0.82560 0.93405 1.40329 0.92002 1.42889 1.02537 1.04118 1.90257 1.20482 0.91158 0.87011 0.94605 1.22001 0.99508 0.96674 0.98511 1.21667 0.93066 0.97825 1.01984 1.20913 0.92525 0.85271 0.96510 1.45726 1.04985 1.10191 1.74685 1.17335 0.82265 0.87249 0.75720 1.90861 1.69134 1.33170 1.52179 1.19630 0.92668 0.84955 1.20660 1.21063 0.93588 0.96572 0.98802 1.19587 0.93324 0.93411 1.21732 1.17643 0.87478 0.83068 0.74194 1.43424 1.13793 1.05322 1.76687 1.90812 1.40320 1.64512 1.53481 1.23204 0.84751 0.97121 0.96676 1.41690 1.10666 1.03918 1.53500 0.71431 1.21751 0.99858 0.96794 0.96718 1.21701 0.95091 0.97835 1.00992 0.93506 0.80502 0.93217 0.93044 0.93100 0.89968 0.89511 0.91294 0.75015 0.85817 0.74888 0.75819 0.74006 0.90097 0.92437 0.91963 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.71 13.97 21.65 0.30 -62.41 16 2 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 3 Si 0.95 45.99 27.74 68.60 1.90 47.89 16 4 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 5 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 6 H -0.26 -11.30 6.52 99.48 0.65 -10.65 16 7 C -0.22 -12.40 10.41 84.03 0.87 -11.53 16 8 H 0.06 3.73 8.06 -2.91 -0.02 3.71 16 9 N -0.76 -34.58 4.93 -322.93 -1.59 -36.17 16 10 C 0.17 6.17 2.77 44.99 0.12 6.30 16 11 C -0.13 -3.86 5.50 30.60 0.17 -3.69 16 12 C -0.11 -2.15 5.39 30.59 0.16 -1.99 16 13 C 0.15 3.26 2.45 44.99 0.11 3.37 16 14 N -0.71 -11.06 5.07 -446.38 -2.27 -13.32 16 15 C 0.59 12.96 7.76 86.48 0.67 13.64 16 16 O -0.57 -18.82 16.52 -4.28 -0.07 -18.89 16 17 C -0.07 -1.13 6.99 40.01 0.28 -0.85 16 18 C -0.07 -1.60 10.37 22.59 0.23 -1.36 16 19 C -0.27 -3.89 6.13 -20.12 -0.12 -4.01 16 20 C 0.59 10.06 8.09 86.65 0.70 10.76 16 21 N -0.83 -4.14 8.86 -175.91 -1.56 -5.70 16 22 O -0.61 -17.81 17.76 -4.06 -0.07 -17.88 16 23 C 0.13 0.33 11.43 84.32 0.96 1.29 16 24 N -0.50 -2.24 5.91 -183.36 -1.08 -3.32 16 25 H 0.44 -1.56 8.14 -92.70 -0.75 -2.31 16 26 C -0.11 -2.66 5.50 30.61 0.17 -2.49 16 27 C -0.12 -3.49 5.39 30.61 0.17 -3.32 16 28 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 29 H 0.36 16.31 5.66 -92.71 -0.52 15.79 16 30 H 0.05 1.81 8.08 -2.39 -0.02 1.79 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.07 1.85 7.57 -2.39 -0.02 1.84 16 36 H 0.41 2.84 7.68 -92.71 -0.71 2.13 16 37 H 0.12 3.45 8.06 -2.91 -0.02 3.43 16 38 H 0.42 -1.76 7.74 -92.70 -0.72 -2.48 16 39 H 0.41 1.60 8.93 -92.71 -0.83 0.77 16 40 H 0.24 -2.46 7.44 -2.91 -0.02 -2.48 16 41 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 43 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -92.41 365.96 -1.97 -94.39 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -2.51 Total: 12.65 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 4.97 Total: 2.76 kcal Atomic # 7 Polarization: -114.72 SS G_CDS: -6.20 Total: -120.92 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -0.14 Total: -36.78 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.90 Total: 47.89 kcal Total: -92.41 -1.97 -94.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026585063.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.052 kcal (2) G-P(sol) polarization free energy of solvation -92.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds