Wall clock time and date at job start Tue Mar 31 2020 12:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99754 * 2 1 4 4 H 1.48501 * 109.47246 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46782 * 299.99483 * 3 2 1 6 6 H 1.48501 * 109.47500 * 59.99417 * 3 2 1 7 7 C 1.38807 * 120.00331 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00445 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00167 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00174 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.47164 * 205.00406 * 10 9 7 12 12 C 1.53005 * 109.47095 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47093 * 59.99796 * 12 11 10 14 14 N 1.46505 * 109.46909 * 59.99781 * 13 12 11 15 15 C 1.34778 * 119.99856 * 154.99664 * 14 13 12 16 16 O 1.21616 * 119.99492 * 0.02562 * 15 14 13 17 17 C 1.47381 * 120.00273 * 180.02562 * 15 14 13 18 18 C 1.38212 * 126.46256 * 359.97438 * 17 15 14 19 19 N 1.34254 * 108.39869 * 180.02562 * 18 17 15 20 20 H 0.97001 * 125.39654 * 180.02562 * 19 18 17 21 21 C 1.37783 * 109.21980 * 359.97438 * 19 18 17 22 22 C 1.46806 * 125.85349 * 180.02562 * 21 19 18 23 23 N 1.34777 * 120.00181 * 0.03097 * 22 21 19 24 24 O 1.21681 * 120.00273 * 180.02562 * 22 21 19 25 25 C 1.36358 * 108.29768 * 0.26656 * 21 19 18 26 26 C 1.52998 * 109.47282 * 299.99934 * 13 12 11 27 27 C 1.52997 * 109.47321 * 85.00411 * 10 9 7 28 28 H 0.96991 * 120.00260 * 0.02562 * 1 2 3 29 29 H 0.96999 * 119.99714 * 0.02562 * 9 7 2 30 30 H 1.08999 * 109.47256 * 325.00302 * 10 9 7 31 31 H 1.08999 * 109.47123 * 59.99872 * 11 10 9 32 32 H 1.08999 * 109.46949 * 300.00084 * 11 10 9 33 33 H 1.08999 * 109.47284 * 299.99871 * 12 11 10 34 34 H 1.08995 * 109.46639 * 180.02562 * 12 11 10 35 35 H 1.08994 * 109.46913 * 180.02562 * 13 12 11 36 36 H 0.96994 * 120.00147 * 335.00461 * 14 13 12 37 37 H 1.08008 * 125.79916 * 0.05859 * 18 17 15 38 38 H 0.97001 * 120.00485 * 180.02562 * 23 22 21 39 39 H 0.97005 * 119.99790 * 359.72019 * 23 22 21 40 40 H 1.07992 * 126.49317 * 179.73399 * 25 21 19 41 41 H 1.08999 * 109.47088 * 180.02562 * 26 13 12 42 42 H 1.08999 * 109.47076 * 299.99914 * 26 13 12 43 43 H 1.09007 * 109.46873 * 299.99691 * 27 10 9 44 44 H 1.08999 * 109.47045 * 59.99761 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.1811 -4.7521 -0.6092 12 6 1.9460 -6.0773 -0.6086 13 6 2.3093 -6.4558 0.8286 14 7 1.0849 -6.5982 1.6205 15 6 1.0785 -7.3829 2.7162 16 8 2.0893 -7.9723 3.0479 17 6 -0.1533 -7.5266 3.5126 18 6 -1.3700 -6.9217 3.2598 19 7 -2.2381 -7.3024 4.2106 20 1 -3.1650 -7.0226 4.2697 21 6 -1.6042 -8.1542 5.0887 22 6 -2.2144 -8.7870 6.2645 23 7 -3.5077 -8.5513 6.5616 24 8 -1.5526 -9.5245 6.9707 25 6 -0.3116 -8.3045 4.6816 26 6 3.1864 -5.3604 1.4383 27 6 2.4220 -4.0356 1.4375 28 1 -0.4850 0.8399 -0.0004 29 1 0.3557 -2.3881 -0.0002 30 1 2.9689 -3.5504 -0.5889 31 1 0.9219 -4.4822 -1.6329 32 1 0.2704 -4.8584 -0.0198 33 1 2.8569 -5.9713 -1.1977 34 1 1.3212 -6.8575 -1.0434 35 1 2.8546 -7.3995 0.8290 36 1 0.2789 -6.1279 1.3560 37 1 -1.5859 -6.2563 2.4369 38 1 -3.9108 -8.9691 7.3387 39 1 -4.0342 -7.9603 6.0009 40 1 0.4469 -8.9059 5.1606 41 1 3.4456 -5.6303 2.4621 42 1 4.0973 -5.2545 0.8492 43 1 3.0470 -3.2552 1.8719 44 1 1.5113 -4.1419 2.0269 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026606933.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:07 Heat of formation + Delta-G solvation = -32.974151 kcal Electronic energy + Delta-G solvation = -26600.431834 eV Core-core repulsion = 22745.804515 eV Total energy + Delta-G solvation = -3854.627319 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.86507 -39.83908 -39.10758 -37.68584 -34.61372 -34.23243 -32.78885 -31.62532 -30.77167 -30.41779 -29.59169 -27.54897 -24.05636 -23.48138 -23.23303 -22.18835 -20.93859 -20.58826 -20.02829 -19.37746 -18.78354 -17.42548 -17.07620 -16.60209 -16.15748 -15.63512 -15.36972 -15.30459 -14.83587 -14.40649 -14.22312 -14.00820 -13.80193 -13.58478 -13.50363 -13.38016 -13.06684 -12.60953 -12.35427 -12.16246 -11.84076 -11.60534 -11.01920 -10.90515 -10.79675 -10.68200 -10.37979 -10.23122 -10.17188 -10.10861 -9.84106 -9.69543 -9.58121 -9.40802 -8.93040 -8.81663 -8.64123 -6.96744 -5.79688 -3.07296 1.07124 1.67507 2.56448 2.95053 2.97312 3.39639 3.41150 3.47800 3.49202 3.57290 4.47169 4.56366 4.57139 4.72535 4.93246 5.05525 5.11420 5.15355 5.49921 5.52438 5.61049 5.68497 5.71684 5.78237 5.90941 5.96660 6.03622 6.09481 6.10741 6.27096 6.28661 6.38434 6.39537 6.52400 6.56284 6.69205 6.74849 6.80762 6.91613 6.99453 7.14488 7.69181 7.69851 7.76467 8.39782 8.41786 9.51031 10.09166 10.43448 11.43290 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014602 B = 0.002819 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.042200 B = 9929.934479 C =11109.906923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.904 3.096 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.233 4.233 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.177 3.823 11 C -0.123 4.123 12 C -0.123 4.123 13 C 0.150 3.850 14 N -0.715 5.715 15 C 0.588 3.412 16 O -0.546 6.546 17 C -0.229 4.229 18 C 0.081 3.919 19 N -0.526 5.526 20 H 0.420 0.580 21 C -0.076 4.076 22 C 0.596 3.404 23 N -0.857 5.857 24 O -0.528 6.528 25 C -0.037 4.037 26 C -0.129 4.129 27 C -0.131 4.131 28 H 0.253 0.747 29 H 0.382 0.618 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.397 0.603 37 H 0.184 0.816 38 H 0.408 0.592 39 H 0.396 0.604 40 H 0.159 0.841 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.769 -16.942 5.511 19.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.364 4.364 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.067 3.933 11 C -0.162 4.162 12 C -0.161 4.161 13 C 0.046 3.954 14 N -0.367 5.367 15 C 0.375 3.625 16 O -0.424 6.424 17 C -0.238 4.238 18 C -0.061 4.061 19 N -0.121 5.121 20 H 0.258 0.742 21 C -0.186 4.186 22 C 0.383 3.617 23 N -0.420 5.420 24 O -0.404 6.404 25 C -0.063 4.063 26 C -0.168 4.168 27 C -0.171 4.171 28 H 0.063 0.937 29 H 0.215 0.785 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.233 0.767 37 H 0.201 0.799 38 H 0.240 0.760 39 H 0.223 0.777 40 H 0.176 0.824 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.472 -17.666 6.143 20.141 hybrid contribution -1.281 1.708 -0.027 2.135 sum -8.753 -15.958 6.116 19.201 Atomic orbital electron populations 1.69656 1.05076 1.25425 1.58257 1.24712 0.95509 0.97627 1.03255 0.86153 0.78880 0.84271 0.77140 1.20557 1.21935 1.21957 1.19297 0.91039 0.84151 1.41961 0.91177 1.42422 1.05653 0.99872 1.88619 1.20241 0.94328 0.85764 0.92953 1.21805 0.98535 0.94377 1.01460 1.21801 1.01506 0.97717 0.95077 1.20949 0.85303 0.99091 0.90088 1.45949 1.14633 1.48545 1.27564 1.17332 0.86747 0.78484 0.79897 1.90769 1.34172 1.47746 1.69687 1.19763 0.94158 1.08310 1.01617 1.22577 0.89266 1.00032 0.94237 1.41669 1.12681 1.36330 1.21437 0.74238 1.19953 0.94770 1.05991 0.97872 1.17026 0.81539 0.80153 0.83017 1.43708 1.12241 1.52655 1.33441 1.90914 1.61940 1.37140 1.50358 1.21131 0.93907 0.97410 0.93886 1.21923 0.98353 0.95607 1.00951 1.22186 0.99650 0.94918 1.00377 0.93685 0.78504 0.93548 0.91537 0.92814 0.90391 0.91806 0.89860 0.76722 0.79866 0.76021 0.77687 0.82360 0.92161 0.91496 0.92239 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.36 13.06 55.49 0.72 -26.64 16 2 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.90 22.06 29.55 -169.99 -5.02 17.04 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.23 -6.27 9.93 -15.06 -0.15 -6.42 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -17.14 5.12 -53.43 -0.27 -17.41 16 10 C 0.18 3.24 2.77 -67.93 -0.19 3.05 16 11 C -0.12 -1.75 5.22 -26.72 -0.14 -1.89 16 12 C -0.12 -1.42 5.61 -26.73 -0.15 -1.57 16 13 C 0.15 1.92 2.78 -67.93 -0.19 1.73 16 14 N -0.72 -8.67 4.22 -54.89 -0.23 -8.90 16 15 C 0.59 8.26 7.78 -12.54 -0.10 8.17 16 16 O -0.55 -9.70 16.58 5.26 0.09 -9.61 16 17 C -0.23 -2.66 6.13 -105.02 -0.64 -3.31 16 18 C 0.08 0.63 11.43 -16.50 -0.19 0.44 16 19 N -0.53 -3.23 5.91 -9.30 -0.05 -3.28 16 20 H 0.42 0.90 8.14 -40.82 -0.33 0.57 16 21 C -0.08 -0.72 6.99 -82.40 -0.58 -1.30 16 22 C 0.60 5.81 8.06 -12.80 -0.10 5.70 16 23 N -0.86 -4.10 8.87 30.29 0.27 -3.83 16 24 O -0.53 -7.45 17.69 5.21 0.09 -7.36 16 25 C -0.04 -0.45 10.37 -39.09 -0.41 -0.86 16 26 C -0.13 -1.89 5.60 -26.76 -0.15 -2.04 16 27 C -0.13 -2.26 5.34 -26.76 -0.14 -2.40 16 28 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.38 9.49 7.80 -40.82 -0.32 9.17 16 30 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.05 0.70 6.50 -51.93 -0.34 0.37 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 1.12 7.58 -51.93 -0.39 0.72 16 36 H 0.40 4.07 5.78 -40.82 -0.24 3.83 16 37 H 0.18 0.89 7.44 -52.48 -0.39 0.50 16 38 H 0.41 1.52 8.93 -40.82 -0.36 1.16 16 39 H 0.40 0.62 7.91 -40.82 -0.32 0.29 16 40 H 0.16 2.11 8.06 -52.49 -0.42 1.68 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.05 0.93 7.60 -51.93 -0.39 0.54 16 LS Contribution 364.64 15.07 5.50 5.50 Total: -1.00 -36.76 364.64 -8.15 -44.91 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -6.01 Total: 10.81 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -3.22 Total: -1.23 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: 0.43 Total: -60.06 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: 0.18 Total: -16.97 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.76 -8.15 -44.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026606933.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.939 kcal (2) G-P(sol) polarization free energy of solvation -36.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds