Wall clock time and date at job start Tue Mar 31 2020 12:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99754 * 2 1 4 4 H 1.48501 * 109.47246 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46782 * 299.99483 * 3 2 1 6 6 H 1.48501 * 109.47500 * 59.99417 * 3 2 1 7 7 C 1.38807 * 120.00331 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00445 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00167 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00174 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.47164 * 205.00406 * 10 9 7 12 12 C 1.53005 * 109.47095 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47093 * 59.99796 * 12 11 10 14 14 N 1.46505 * 109.46909 * 59.99781 * 13 12 11 15 15 C 1.34778 * 119.99856 * 154.99664 * 14 13 12 16 16 O 1.21616 * 119.99492 * 0.02562 * 15 14 13 17 17 C 1.47381 * 120.00273 * 180.02562 * 15 14 13 18 18 C 1.38212 * 126.46256 * 359.97438 * 17 15 14 19 19 N 1.34254 * 108.39869 * 180.02562 * 18 17 15 20 20 H 0.97001 * 125.39654 * 180.02562 * 19 18 17 21 21 C 1.37783 * 109.21980 * 359.97438 * 19 18 17 22 22 C 1.46806 * 125.85349 * 180.02562 * 21 19 18 23 23 N 1.34777 * 120.00181 * 0.03097 * 22 21 19 24 24 O 1.21681 * 120.00273 * 180.02562 * 22 21 19 25 25 C 1.36358 * 108.29768 * 0.26656 * 21 19 18 26 26 C 1.52998 * 109.47282 * 299.99934 * 13 12 11 27 27 C 1.52997 * 109.47321 * 85.00411 * 10 9 7 28 28 H 0.96991 * 120.00260 * 0.02562 * 1 2 3 29 29 H 0.96999 * 119.99714 * 0.02562 * 9 7 2 30 30 H 1.08999 * 109.47256 * 325.00302 * 10 9 7 31 31 H 1.08999 * 109.47123 * 59.99872 * 11 10 9 32 32 H 1.08999 * 109.46949 * 300.00084 * 11 10 9 33 33 H 1.08999 * 109.47284 * 299.99871 * 12 11 10 34 34 H 1.08995 * 109.46639 * 180.02562 * 12 11 10 35 35 H 1.08994 * 109.46913 * 180.02562 * 13 12 11 36 36 H 0.96994 * 120.00147 * 335.00461 * 14 13 12 37 37 H 1.08008 * 125.79916 * 0.05859 * 18 17 15 38 38 H 0.97001 * 120.00485 * 180.02562 * 23 22 21 39 39 H 0.97005 * 119.99790 * 359.72019 * 23 22 21 40 40 H 1.07992 * 126.49317 * 179.73399 * 25 21 19 41 41 H 1.08999 * 109.47088 * 180.02562 * 26 13 12 42 42 H 1.08999 * 109.47076 * 299.99914 * 26 13 12 43 43 H 1.09007 * 109.46873 * 299.99691 * 27 10 9 44 44 H 1.08999 * 109.47045 * 59.99761 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.1811 -4.7521 -0.6092 12 6 1.9460 -6.0773 -0.6086 13 6 2.3093 -6.4558 0.8286 14 7 1.0849 -6.5982 1.6205 15 6 1.0785 -7.3829 2.7162 16 8 2.0893 -7.9723 3.0479 17 6 -0.1533 -7.5266 3.5126 18 6 -1.3700 -6.9217 3.2598 19 7 -2.2381 -7.3024 4.2106 20 1 -3.1650 -7.0226 4.2697 21 6 -1.6042 -8.1542 5.0887 22 6 -2.2144 -8.7870 6.2645 23 7 -3.5077 -8.5513 6.5616 24 8 -1.5526 -9.5245 6.9707 25 6 -0.3116 -8.3045 4.6816 26 6 3.1864 -5.3604 1.4383 27 6 2.4220 -4.0356 1.4375 28 1 -0.4850 0.8399 -0.0004 29 1 0.3557 -2.3881 -0.0002 30 1 2.9689 -3.5504 -0.5889 31 1 0.9219 -4.4822 -1.6329 32 1 0.2704 -4.8584 -0.0198 33 1 2.8569 -5.9713 -1.1977 34 1 1.3212 -6.8575 -1.0434 35 1 2.8546 -7.3995 0.8290 36 1 0.2789 -6.1279 1.3560 37 1 -1.5859 -6.2563 2.4369 38 1 -3.9108 -8.9691 7.3387 39 1 -4.0342 -7.9603 6.0009 40 1 0.4469 -8.9059 5.1606 41 1 3.4456 -5.6303 2.4621 42 1 4.0973 -5.2545 0.8492 43 1 3.0470 -3.2552 1.8719 44 1 1.5113 -4.1419 2.0269 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026606933.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:06 Heat of formation + Delta-G solvation = -62.963624 kcal Electronic energy + Delta-G solvation = -26601.732275 eV Core-core repulsion = 22745.804515 eV Total energy + Delta-G solvation = -3855.927761 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.61958 -40.92782 -39.93969 -38.92880 -36.21114 -34.91465 -34.26794 -32.72974 -32.06672 -31.63006 -30.52427 -28.99933 -25.68797 -24.57395 -24.09961 -23.40069 -22.32411 -21.36113 -20.95960 -20.14410 -19.98501 -19.01927 -18.03976 -17.49932 -16.95525 -16.87326 -16.47652 -16.40278 -16.11602 -15.69375 -15.32355 -15.16395 -14.94618 -14.89439 -14.58102 -14.41810 -14.34986 -13.84037 -13.58506 -13.32710 -13.03680 -13.03000 -12.82837 -12.75043 -12.09185 -11.96991 -11.95700 -11.64512 -11.54381 -11.25736 -11.04040 -10.97194 -10.86107 -10.78340 -10.24796 -9.89707 -9.42231 -8.92544 -7.91059 -5.16541 0.34250 0.77896 1.47733 1.49312 1.57801 1.93336 2.15951 2.25123 2.55657 2.58640 2.60049 3.42698 3.79815 3.84461 3.91482 3.94011 3.97866 4.07154 4.23045 4.38461 4.40885 4.46012 4.66603 4.72022 4.74671 4.77916 4.85976 4.92192 5.09584 5.18352 5.24151 5.32623 5.35000 5.38289 5.51058 5.54182 5.63343 5.68791 5.72211 5.77281 6.23492 6.33523 6.42184 6.72641 7.15723 7.39877 7.39935 8.18187 8.41180 9.32346 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014602 B = 0.002819 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.042200 B = 9929.934479 C =11109.906923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.073 4.073 3 Si 0.961 3.039 4 H -0.271 1.271 5 H -0.294 1.294 6 H -0.296 1.296 7 C -0.231 4.231 8 H 0.068 0.932 9 N -0.734 5.734 10 C 0.173 3.827 11 C -0.114 4.114 12 C -0.109 4.109 13 C 0.153 3.847 14 N -0.704 5.704 15 C 0.585 3.415 16 O -0.594 6.594 17 C -0.262 4.262 18 C 0.113 3.887 19 N -0.498 5.498 20 H 0.444 0.556 21 C -0.071 4.071 22 C 0.595 3.405 23 N -0.828 5.828 24 O -0.581 6.581 25 C -0.071 4.071 26 C -0.121 4.121 27 C -0.118 4.118 28 H 0.249 0.751 29 H 0.375 0.625 30 H 0.037 0.963 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.409 0.591 37 H 0.223 0.777 38 H 0.417 0.583 39 H 0.415 0.585 40 H 0.130 0.870 41 H 0.044 0.956 42 H 0.076 0.924 43 H 0.028 0.972 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.667 -16.963 4.451 20.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.266 4.266 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.221 1.221 6 H -0.224 1.224 7 C -0.363 4.363 8 H 0.086 0.914 9 N -0.374 5.374 10 C 0.064 3.936 11 C -0.152 4.152 12 C -0.148 4.148 13 C 0.048 3.952 14 N -0.356 5.356 15 C 0.375 3.625 16 O -0.476 6.476 17 C -0.271 4.271 18 C -0.031 4.031 19 N -0.095 5.095 20 H 0.286 0.714 21 C -0.182 4.182 22 C 0.381 3.619 23 N -0.393 5.393 24 O -0.461 6.461 25 C -0.098 4.098 26 C -0.160 4.160 27 C -0.158 4.158 28 H 0.058 0.942 29 H 0.207 0.793 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.247 0.753 37 H 0.240 0.760 38 H 0.250 0.750 39 H 0.246 0.754 40 H 0.148 0.852 41 H 0.062 0.938 42 H 0.094 0.906 43 H 0.047 0.953 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.446 -17.677 5.069 20.673 hybrid contribution -0.712 1.690 0.328 1.863 sum -10.157 -15.987 5.396 19.694 Atomic orbital electron populations 1.69773 1.06176 1.25662 1.60095 1.25385 0.96333 1.00475 1.04387 0.85242 0.78246 0.80767 0.76569 1.19599 1.22087 1.22384 1.19590 0.91190 0.85542 1.40024 0.91376 1.42591 1.05477 1.00814 1.88499 1.20460 0.94439 0.85168 0.93487 1.21691 0.98527 0.93915 1.01082 1.21734 1.02118 0.96797 0.94105 1.20894 0.85355 0.98092 0.90819 1.45826 1.14834 1.47992 1.26901 1.17702 0.86938 0.77839 0.80036 1.90737 1.36086 1.49798 1.70965 1.19619 0.94964 1.10558 1.01994 1.23004 0.87621 0.98246 0.94250 1.41575 1.13569 1.34515 1.19813 0.71358 1.19752 0.94114 1.06187 0.98165 1.17093 0.82606 0.79622 0.82594 1.43462 1.10531 1.51770 1.33522 1.90892 1.63551 1.39610 1.52038 1.21059 0.94930 0.98644 0.95118 1.21836 0.98921 0.94759 1.00513 1.21979 0.99229 0.95325 0.99303 0.94184 0.79315 0.94527 0.91725 0.91309 0.89538 0.88977 0.90026 0.75340 0.76034 0.74964 0.75383 0.85154 0.93751 0.90577 0.95319 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.49 13.06 21.65 0.28 -56.21 16 2 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 3 Si 0.96 45.35 29.55 68.60 2.03 47.38 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 6 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 7 C -0.23 -12.38 9.93 84.03 0.83 -11.54 16 8 H 0.07 3.60 7.83 -2.91 -0.02 3.58 16 9 N -0.73 -34.25 5.12 -322.95 -1.65 -35.90 16 10 C 0.17 6.12 2.77 44.99 0.12 6.24 16 11 C -0.11 -2.92 5.22 30.60 0.16 -2.76 16 12 C -0.11 -2.18 5.61 30.60 0.17 -2.01 16 13 C 0.15 3.65 2.78 44.99 0.13 3.77 16 14 N -0.70 -15.75 4.22 -445.83 -1.88 -17.63 16 15 C 0.59 16.30 7.78 86.65 0.67 16.98 16 16 O -0.59 -21.88 16.58 -4.08 -0.07 -21.95 16 17 C -0.26 -5.91 6.13 -20.12 -0.12 -6.03 16 18 C 0.11 1.38 11.43 84.32 0.96 2.35 16 19 N -0.50 -4.45 5.91 -183.34 -1.08 -5.54 16 20 H 0.44 -0.17 8.14 -92.71 -0.75 -0.93 16 21 C -0.07 -1.28 6.99 40.01 0.28 -1.00 16 22 C 0.59 11.13 8.06 86.48 0.70 11.83 16 23 N -0.83 -5.98 8.87 -176.30 -1.56 -7.54 16 24 O -0.58 -16.94 17.69 -4.29 -0.08 -17.02 16 25 C -0.07 -1.80 10.37 22.59 0.23 -1.56 16 26 C -0.12 -3.46 5.60 30.58 0.17 -3.29 16 27 C -0.12 -4.02 5.34 30.58 0.16 -3.85 16 28 H 0.25 14.20 8.31 -92.72 -0.77 13.43 16 29 H 0.37 18.36 7.80 -92.71 -0.72 17.64 16 30 H 0.04 1.38 8.08 -2.39 -0.02 1.36 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.07 1.56 6.50 -2.39 -0.02 1.55 16 33 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.09 1.43 8.14 -2.39 -0.02 1.42 16 35 H 0.08 2.07 7.58 -2.39 -0.02 2.06 16 36 H 0.41 7.05 5.78 -92.71 -0.54 6.51 16 37 H 0.22 0.98 7.44 -2.91 -0.02 0.96 16 38 H 0.42 2.19 8.93 -92.71 -0.83 1.36 16 39 H 0.42 -0.22 7.91 -92.70 -0.73 -0.95 16 40 H 0.13 3.92 8.06 -2.91 -0.02 3.90 16 41 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 44 H 0.05 1.75 7.60 -2.39 -0.02 1.73 16 Total: -1.00 -83.87 364.64 -1.55 -85.42 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: -2.48 Total: 23.50 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 4.94 Total: 5.48 kcal Atomic # 7 Polarization: -116.92 SS G_CDS: -5.90 Total: -122.82 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -0.14 Total: -38.96 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -83.87 -1.55 -85.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026606933.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.460 kcal (2) G-P(sol) polarization free energy of solvation -83.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds