Wall clock time and date at job start Tue Mar 31 2020 13:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32214 * 120.50874 * 2 1 4 4 C 1.31911 * 121.14018 * 179.97438 * 3 2 1 5 5 N 1.31752 * 122.19822 * 0.02562 * 4 3 2 6 6 C 1.32752 * 120.86939 * 359.97438 * 5 4 3 7 7 O 1.35275 * 120.61460 * 179.97438 * 6 5 4 8 8 C 1.39773 * 120.50752 * 179.72379 * 2 1 3 9 9 C 1.47535 * 120.98109 * 359.97438 * 8 2 1 10 10 O 1.21588 * 119.99911 * 89.99405 * 9 8 2 11 11 N 1.34778 * 120.00023 * 270.00484 * 9 8 2 12 12 C 1.46926 * 120.62981 * 359.71391 * 11 9 8 13 13 C 1.52762 * 109.00602 * 233.58907 * 12 11 9 14 14 C 1.53032 * 109.38424 * 305.58762 * 13 12 11 15 15 C 1.53038 * 109.54180 * 61.24393 * 14 13 12 16 16 H 1.09001 * 109.52420 * 58.59351 * 15 14 13 17 17 N 1.46491 * 109.50201 * 178.68175 * 15 14 13 18 18 C 1.46501 * 120.00228 * 59.83770 * 17 15 14 19 19 C 1.36937 * 120.00121 * 239.83579 * 17 15 14 20 20 H 1.07998 * 120.00109 * 23.01599 * 19 17 15 21 21 C 1.38806 * 120.00160 * 203.00911 * 19 17 15 22 22 N 1.31625 * 120.00109 * 11.64370 * 21 19 17 23 23 Si 1.86808 * 120.00196 * 191.64056 * 21 19 17 24 24 H 1.48500 * 109.46915 * 90.00324 * 23 21 19 25 25 H 1.48500 * 109.47078 * 209.99998 * 23 21 19 26 26 H 1.48500 * 109.46931 * 330.00321 * 23 21 19 27 27 C 1.46924 * 120.62941 * 180.02562 * 11 9 8 28 28 H 1.09000 * 109.47513 * 90.00169 * 1 2 3 29 29 H 1.09007 * 109.47133 * 209.99638 * 1 2 3 30 30 H 1.08998 * 109.47080 * 329.99846 * 1 2 3 31 31 H 1.07997 * 118.90351 * 180.02562 * 4 3 2 32 32 H 0.96702 * 114.00283 * 90.00351 * 7 6 5 33 33 H 1.08998 * 109.58345 * 353.42254 * 12 11 9 34 34 H 1.08996 * 109.58843 * 113.85042 * 12 11 9 35 35 H 1.09010 * 109.55915 * 185.55228 * 13 12 11 36 36 H 1.09002 * 109.36214 * 65.50609 * 13 12 11 37 37 H 1.09001 * 109.46308 * 301.21790 * 14 13 12 38 38 H 1.09007 * 109.45872 * 181.26530 * 14 13 12 39 39 H 1.09005 * 109.47202 * 93.84911 * 18 17 15 40 40 H 1.08994 * 109.47590 * 213.85548 * 18 17 15 41 41 H 1.09004 * 109.46910 * 333.85275 * 18 17 15 42 42 H 0.96994 * 120.00041 * 179.97438 * 22 21 19 43 43 H 1.09005 * 109.58299 * 246.14736 * 27 11 9 44 44 H 1.08998 * 109.59185 * 6.43114 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4972 1.1536 0.0005 5 7 4.2115 0.0465 0.0005 6 6 3.6233 -1.1436 0.0006 7 8 4.3617 -2.2770 0.0001 8 6 2.2166 -1.2042 0.0058 9 6 1.5123 -2.5006 0.0126 10 8 1.2216 -3.0401 -1.0376 11 7 1.1910 -3.0868 1.1829 12 6 1.5409 -2.4502 2.4600 13 6 2.3200 -3.4472 3.3160 14 6 1.5091 -4.7372 3.4578 15 6 1.2855 -5.3558 2.0760 16 1 2.2486 -5.5587 1.6075 17 7 0.5364 -6.6069 2.2156 18 6 -0.7971 -6.5985 2.8223 19 6 1.0825 -7.7844 1.7791 20 1 2.1540 -7.8799 1.6832 21 6 0.2590 -8.8552 1.4599 22 7 -1.0409 -8.6771 1.3541 23 14 0.9954 -10.5491 1.1805 24 1 1.0400 -11.2879 2.4679 25 1 0.1592 -11.2982 0.2085 26 1 2.3725 -10.4076 0.6430 27 6 0.4902 -4.3780 1.2058 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8901 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 4.0088 2.1048 0.0009 32 1 4.5768 -2.6068 0.8833 33 1 2.1575 -1.5710 2.2731 34 1 0.6310 -2.1564 2.9832 35 1 2.4989 -3.0195 4.3026 36 1 3.2736 -3.6676 2.8362 37 1 0.5457 -4.5122 3.9152 38 1 2.0539 -5.4412 4.0870 39 1 -1.5517 -6.5167 2.0400 40 1 -0.9491 -7.5234 3.3785 41 1 -0.8826 -5.7489 3.4999 42 1 -1.6163 -9.4253 1.1308 43 1 -0.5073 -4.2449 1.6246 44 1 0.4115 -4.7692 0.1915 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027540375.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:24 Heat of formation + Delta-G solvation = 5.591111 kcal Electronic energy + Delta-G solvation = -28170.433291 eV Core-core repulsion = 24317.478287 eV Total energy + Delta-G solvation = -3852.955004 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.73226 -39.75361 -38.01724 -37.52300 -35.19966 -34.47079 -32.66608 -31.96580 -31.37832 -29.25653 -28.64530 -26.08925 -25.99854 -24.54297 -23.51519 -23.10788 -21.82603 -20.23625 -19.20710 -18.91316 -18.26374 -17.49101 -16.79327 -16.66563 -15.99947 -15.31880 -15.13337 -14.60949 -14.49123 -14.28765 -14.10762 -13.70775 -13.62815 -13.57930 -13.15018 -12.92899 -12.76582 -12.63866 -12.45625 -12.31934 -11.97752 -11.48340 -11.30942 -11.13374 -10.84849 -10.73503 -10.66392 -10.48091 -10.42334 -10.26004 -10.01639 -9.87387 -9.82592 -9.72801 -9.52141 -8.65575 -8.45911 -6.81066 -5.76442 -3.23485 0.30663 0.56846 2.45981 2.90887 3.01907 3.26939 3.37467 3.43946 3.45284 3.63338 3.92412 4.24538 4.45205 4.63548 4.72574 4.81129 4.94431 5.00262 5.13990 5.24083 5.35362 5.37594 5.41208 5.45163 5.58012 5.62734 5.78720 5.85786 5.88684 5.98530 6.11561 6.25554 6.37530 6.49339 6.53466 6.69630 6.83841 6.88034 7.02937 7.33411 7.43688 7.65285 7.67465 7.78059 8.14503 8.35955 9.19299 9.81126 10.29215 11.28320 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021209 B = 0.003490 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.852089 B = 8020.087219 C = 8171.609298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.224 3.776 3 N -0.525 5.525 4 C 0.330 3.670 5 N -0.541 5.541 6 C 0.396 3.604 7 O -0.464 6.464 8 C -0.238 4.238 9 C 0.571 3.429 10 O -0.518 6.518 11 N -0.597 5.597 12 C 0.109 3.891 13 C -0.130 4.130 14 C -0.133 4.133 15 C 0.169 3.831 16 H 0.066 0.934 17 N -0.590 5.590 18 C 0.161 3.839 19 C -0.258 4.258 20 H 0.069 0.931 21 C 0.005 3.995 22 N -0.906 5.906 23 Si 0.906 3.094 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.098 3.902 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.206 0.794 32 H 0.411 0.589 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.029 0.971 40 H 0.045 0.955 41 H -0.001 1.001 42 H 0.253 0.747 43 H 0.065 0.935 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.567 19.690 4.320 20.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.078 3.922 3 N -0.242 5.242 4 C 0.042 3.958 5 N -0.266 5.266 6 C 0.208 3.792 7 O -0.272 6.272 8 C -0.248 4.248 9 C 0.355 3.645 10 O -0.393 6.393 11 N -0.330 5.330 12 C -0.014 4.014 13 C -0.169 4.169 14 C -0.173 4.173 15 C 0.059 3.941 16 H 0.084 0.916 17 N -0.312 5.312 18 C 0.017 3.983 19 C -0.388 4.388 20 H 0.087 0.913 21 C -0.194 4.194 22 N -0.550 5.550 23 Si 0.736 3.264 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.204 1.204 27 C -0.025 4.025 28 H 0.113 0.887 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.222 0.778 32 H 0.272 0.728 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.047 0.953 40 H 0.064 0.936 41 H 0.017 0.983 42 H 0.063 0.937 43 H 0.083 0.917 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.693 20.022 3.123 21.048 hybrid contribution 0.128 -1.779 0.257 1.802 sum 5.821 18.243 3.381 19.445 Atomic orbital electron populations 1.20921 0.86899 1.04579 1.04712 1.21811 0.97783 0.85945 0.86705 1.68294 1.10191 1.29332 1.16339 1.24950 0.86269 0.96103 0.88441 1.68064 1.42626 0.98644 1.17283 1.19393 0.85592 0.85949 0.88265 1.84715 1.72406 1.35828 1.34226 1.21828 0.95216 0.97150 1.10563 1.17601 0.79111 0.83428 0.84320 1.90856 1.53540 1.63784 1.31090 1.48313 1.57458 1.22589 1.04663 1.21623 0.99834 0.95263 0.84728 1.21842 0.99106 0.96685 0.99293 1.22096 0.99664 0.95267 1.00272 1.20619 0.95316 0.86166 0.91961 0.91605 1.43932 1.16935 1.01470 1.68842 1.20804 0.86065 0.96717 0.94735 1.19227 0.91289 0.88988 1.39254 0.91322 1.25049 0.95655 0.99117 0.99534 1.70058 1.02725 1.30200 1.52030 0.86230 0.78353 0.84245 0.77557 1.21480 1.21678 1.20433 1.22673 0.95513 0.80545 1.03811 0.88653 0.89789 0.88987 0.77810 0.72832 0.91613 0.90938 0.90985 0.91966 0.92065 0.91464 0.95309 0.93623 0.98281 0.93654 0.91681 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 9.86 36.01 0.35 -0.73 16 2 C 0.22 2.57 6.86 -81.85 -0.56 2.01 16 3 N -0.53 -5.61 10.36 -10.52 -0.11 -5.72 16 4 C 0.33 3.16 12.27 -92.09 -1.13 2.03 16 5 N -0.54 -6.32 10.45 -14.32 -0.15 -6.47 16 6 C 0.40 5.07 7.72 -16.18 -0.12 4.95 16 7 O -0.46 -5.80 13.10 -17.52 -0.23 -6.03 16 8 C -0.24 -3.15 3.67 -104.56 -0.38 -3.54 16 9 C 0.57 9.10 5.39 -12.47 -0.07 9.03 16 10 O -0.52 -10.65 16.52 5.29 0.09 -10.56 16 11 N -0.60 -8.63 2.98 -174.28 -0.52 -9.15 16 12 C 0.11 1.17 6.31 -3.93 -0.02 1.14 16 13 C -0.13 -1.41 6.06 -26.84 -0.16 -1.57 16 14 C -0.13 -1.98 5.13 -26.70 -0.14 -2.12 16 15 C 0.17 3.21 2.74 -67.84 -0.19 3.03 16 16 H 0.07 1.33 7.87 -51.93 -0.41 0.93 16 17 N -0.59 -14.05 2.81 -173.38 -0.49 -14.53 16 18 C 0.16 3.75 7.91 59.85 0.47 4.23 16 19 C -0.26 -6.92 9.59 -15.06 -0.14 -7.07 16 20 H 0.07 1.81 7.82 -52.49 -0.41 1.40 16 21 C 0.01 0.14 5.12 -17.43 -0.09 0.05 16 22 N -0.91 -25.96 10.64 55.49 0.59 -25.37 16 23 Si 0.91 21.73 29.57 -169.99 -5.03 16.71 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 C 0.10 1.77 5.79 -3.73 -0.02 1.75 16 28 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 0.84 7.17 -51.93 -0.37 0.47 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.21 1.12 8.06 -52.49 -0.42 0.69 16 32 H 0.41 3.18 9.06 45.56 0.41 3.60 16 33 H 0.07 0.62 6.23 -51.93 -0.32 0.29 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.91 6.71 -51.93 -0.35 0.57 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.03 0.73 7.42 -51.93 -0.39 0.35 16 40 H 0.05 1.16 7.22 -51.93 -0.37 0.78 16 41 H 0.00 -0.02 6.45 -51.93 -0.33 -0.36 16 42 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.06 1.17 7.51 -51.93 -0.39 0.78 16 44 H 0.09 2.06 7.00 -51.93 -0.36 1.70 16 LS Contribution 357.85 15.07 5.39 5.39 Total: -1.00 -33.78 357.85 -8.05 -41.82 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -5.39 Total: 0.72 kcal Atomic # 6 Polarization: 15.40 SS G_CDS: -2.20 Total: 13.19 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: -0.68 Total: -61.24 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.14 Total: -16.59 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.78 -8.05 -41.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027540375.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.416 kcal (2) G-P(sol) polarization free energy of solvation -33.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds