Wall clock time and date at job start Tue Mar 31 2020 13:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32214 * 120.50874 * 2 1 4 4 C 1.31911 * 121.14018 * 179.97438 * 3 2 1 5 5 N 1.31752 * 122.19822 * 0.02562 * 4 3 2 6 6 C 1.32752 * 120.86939 * 359.97438 * 5 4 3 7 7 O 1.35275 * 120.61460 * 179.97438 * 6 5 4 8 8 C 1.39773 * 120.50752 * 179.72379 * 2 1 3 9 9 C 1.47535 * 120.98109 * 359.97438 * 8 2 1 10 10 O 1.21588 * 119.99911 * 89.99405 * 9 8 2 11 11 N 1.34778 * 120.00023 * 270.00484 * 9 8 2 12 12 C 1.46926 * 120.62981 * 359.71391 * 11 9 8 13 13 C 1.52762 * 109.00602 * 233.58907 * 12 11 9 14 14 C 1.53032 * 109.38424 * 305.58762 * 13 12 11 15 15 C 1.53038 * 109.54180 * 61.24393 * 14 13 12 16 16 H 1.09001 * 109.52420 * 58.59351 * 15 14 13 17 17 N 1.46491 * 109.50201 * 178.68175 * 15 14 13 18 18 C 1.46501 * 120.00228 * 59.83770 * 17 15 14 19 19 C 1.36937 * 120.00121 * 239.83579 * 17 15 14 20 20 H 1.07998 * 120.00109 * 23.01599 * 19 17 15 21 21 C 1.38806 * 120.00160 * 203.00911 * 19 17 15 22 22 N 1.31625 * 120.00109 * 11.64370 * 21 19 17 23 23 Si 1.86808 * 120.00196 * 191.64056 * 21 19 17 24 24 H 1.48500 * 109.46915 * 90.00324 * 23 21 19 25 25 H 1.48500 * 109.47078 * 209.99998 * 23 21 19 26 26 H 1.48500 * 109.46931 * 330.00321 * 23 21 19 27 27 C 1.46924 * 120.62941 * 180.02562 * 11 9 8 28 28 H 1.09000 * 109.47513 * 90.00169 * 1 2 3 29 29 H 1.09007 * 109.47133 * 209.99638 * 1 2 3 30 30 H 1.08998 * 109.47080 * 329.99846 * 1 2 3 31 31 H 1.07997 * 118.90351 * 180.02562 * 4 3 2 32 32 H 0.96702 * 114.00283 * 90.00351 * 7 6 5 33 33 H 1.08998 * 109.58345 * 353.42254 * 12 11 9 34 34 H 1.08996 * 109.58843 * 113.85042 * 12 11 9 35 35 H 1.09010 * 109.55915 * 185.55228 * 13 12 11 36 36 H 1.09002 * 109.36214 * 65.50609 * 13 12 11 37 37 H 1.09001 * 109.46308 * 301.21790 * 14 13 12 38 38 H 1.09007 * 109.45872 * 181.26530 * 14 13 12 39 39 H 1.09005 * 109.47202 * 93.84911 * 18 17 15 40 40 H 1.08994 * 109.47590 * 213.85548 * 18 17 15 41 41 H 1.09004 * 109.46910 * 333.85275 * 18 17 15 42 42 H 0.96994 * 120.00041 * 179.97438 * 22 21 19 43 43 H 1.09005 * 109.58299 * 246.14736 * 27 11 9 44 44 H 1.08998 * 109.59185 * 6.43114 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4972 1.1536 0.0005 5 7 4.2115 0.0465 0.0005 6 6 3.6233 -1.1436 0.0006 7 8 4.3617 -2.2770 0.0001 8 6 2.2166 -1.2042 0.0058 9 6 1.5123 -2.5006 0.0126 10 8 1.2216 -3.0401 -1.0376 11 7 1.1910 -3.0868 1.1829 12 6 1.5409 -2.4502 2.4600 13 6 2.3200 -3.4472 3.3160 14 6 1.5091 -4.7372 3.4578 15 6 1.2855 -5.3558 2.0760 16 1 2.2486 -5.5587 1.6075 17 7 0.5364 -6.6069 2.2156 18 6 -0.7971 -6.5985 2.8223 19 6 1.0825 -7.7844 1.7791 20 1 2.1540 -7.8799 1.6832 21 6 0.2590 -8.8552 1.4599 22 7 -1.0409 -8.6771 1.3541 23 14 0.9954 -10.5491 1.1805 24 1 1.0400 -11.2879 2.4679 25 1 0.1592 -11.2982 0.2085 26 1 2.3725 -10.4076 0.6430 27 6 0.4902 -4.3780 1.2058 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8901 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 4.0088 2.1048 0.0009 32 1 4.5768 -2.6068 0.8833 33 1 2.1575 -1.5710 2.2731 34 1 0.6310 -2.1564 2.9832 35 1 2.4989 -3.0195 4.3026 36 1 3.2736 -3.6676 2.8362 37 1 0.5457 -4.5122 3.9152 38 1 2.0539 -5.4412 4.0870 39 1 -1.5517 -6.5167 2.0400 40 1 -0.9491 -7.5234 3.3785 41 1 -0.8826 -5.7489 3.4999 42 1 -1.6163 -9.4253 1.1308 43 1 -0.5073 -4.2449 1.6246 44 1 0.4115 -4.7692 0.1915 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027540375.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:23 Heat of formation + Delta-G solvation = -20.294674 kcal Electronic energy + Delta-G solvation = -28171.555783 eV Core-core repulsion = 24317.478287 eV Total energy + Delta-G solvation = -3854.077496 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.66732 -40.96101 -38.98288 -38.89616 -36.83310 -35.37302 -34.08379 -33.01161 -32.89431 -30.61509 -29.72591 -28.04693 -27.10780 -25.69310 -25.06776 -23.97420 -23.12367 -21.60653 -20.24444 -20.06788 -19.18706 -18.89226 -18.52808 -17.63445 -17.18557 -16.93392 -16.22326 -15.90578 -15.77734 -15.37635 -15.30934 -15.16532 -15.03600 -14.46793 -14.41255 -13.99015 -13.92965 -13.90908 -13.78462 -13.56435 -13.14283 -12.96287 -12.83156 -12.52631 -12.46075 -12.23354 -12.16642 -12.11816 -11.78221 -11.70127 -11.49878 -11.40238 -11.15304 -10.66093 -10.62970 -10.50744 -9.82446 -8.77216 -7.84651 -5.33367 -0.56777 -0.30510 1.24663 1.44781 1.45739 1.54319 1.75696 2.13498 2.41198 2.49414 2.86778 3.09463 3.21790 3.29466 3.57647 3.73981 3.93268 3.99866 4.01927 4.06702 4.16834 4.23733 4.34105 4.49355 4.52726 4.61718 4.64027 4.76238 4.83497 4.87866 4.92606 5.00415 5.11402 5.14507 5.27952 5.37286 5.40532 5.55270 5.62401 5.63533 5.73580 6.22965 6.28807 6.32019 6.82798 6.91275 7.14369 7.85809 8.27465 9.17845 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021209 B = 0.003490 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.852089 B = 8020.087219 C = 8171.609298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.229 3.771 3 N -0.527 5.527 4 C 0.339 3.661 5 N -0.551 5.551 6 C 0.396 3.604 7 O -0.482 6.482 8 C -0.257 4.257 9 C 0.576 3.424 10 O -0.577 6.577 11 N -0.589 5.589 12 C 0.106 3.894 13 C -0.122 4.122 14 C -0.122 4.122 15 C 0.167 3.833 16 H 0.047 0.953 17 N -0.607 5.607 18 C 0.179 3.821 19 C -0.265 4.265 20 H 0.068 0.932 21 C -0.050 4.050 22 N -0.936 5.936 23 Si 0.966 3.034 24 H -0.282 1.282 25 H -0.297 1.297 26 H -0.272 1.272 27 C 0.114 3.886 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.116 0.884 31 H 0.247 0.753 32 H 0.428 0.572 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.060 0.940 39 H -0.002 1.002 40 H 0.017 0.983 41 H 0.038 0.962 42 H 0.248 0.752 43 H 0.067 0.933 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.101 22.587 6.078 24.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.083 3.917 3 N -0.243 5.243 4 C 0.053 3.947 5 N -0.277 5.277 6 C 0.208 3.792 7 O -0.293 6.293 8 C -0.267 4.267 9 C 0.362 3.638 10 O -0.456 6.456 11 N -0.320 5.320 12 C -0.016 4.016 13 C -0.160 4.160 14 C -0.161 4.161 15 C 0.059 3.941 16 H 0.065 0.935 17 N -0.330 5.330 18 C 0.034 3.966 19 C -0.395 4.395 20 H 0.085 0.915 21 C -0.245 4.245 22 N -0.582 5.582 23 Si 0.795 3.205 24 H -0.208 1.208 25 H -0.223 1.223 26 H -0.197 1.197 27 C -0.010 4.010 28 H 0.112 0.888 29 H 0.094 0.906 30 H 0.135 0.865 31 H 0.263 0.737 32 H 0.292 0.708 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.128 0.872 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.017 0.983 40 H 0.036 0.964 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.085 0.915 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.275 22.973 4.944 24.599 hybrid contribution -0.280 -2.550 -0.293 2.582 sum 6.995 20.423 4.651 22.083 Atomic orbital electron populations 1.20982 0.85828 1.05377 1.04880 1.22067 0.98571 0.85570 0.85484 1.68433 1.10694 1.28423 1.16722 1.25858 0.86061 0.96958 0.85795 1.68192 1.42725 0.98600 1.18135 1.19484 0.85376 0.86423 0.87917 1.84670 1.72408 1.36180 1.36006 1.21562 0.95385 0.95977 1.13730 1.17974 0.78210 0.84025 0.83556 1.90824 1.55939 1.65601 1.33219 1.48245 1.56481 1.21129 1.06187 1.21940 1.01280 0.95688 0.82650 1.21830 0.98386 0.94359 1.01431 1.21916 1.00711 0.96939 0.96542 1.20782 0.93671 0.84879 0.94743 0.93474 1.44141 1.17273 1.02489 1.69079 1.20507 0.85268 0.96811 0.93991 1.19533 0.91413 0.90431 1.38160 0.91470 1.25772 0.96088 1.02421 1.00228 1.70221 1.03752 1.30639 1.53637 0.85280 0.77667 0.80259 0.77321 1.20828 1.22331 1.19689 1.22112 0.95893 0.82300 1.00739 0.88771 0.90593 0.86498 0.73697 0.70797 0.89294 0.88945 0.87166 0.91352 0.91535 0.92143 0.98336 0.96418 0.94376 0.94274 0.91458 0.93518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.95 9.86 71.24 0.70 -1.25 16 2 C 0.23 4.78 6.86 42.87 0.29 5.08 16 3 N -0.53 -9.54 10.36 -187.21 -1.94 -11.48 16 4 C 0.34 5.27 12.27 180.86 2.22 7.49 16 5 N -0.55 -11.36 10.45 -312.05 -3.26 -14.62 16 6 C 0.40 9.46 7.72 85.18 0.66 10.12 16 7 O -0.48 -11.56 13.10 -85.60 -1.12 -12.68 16 8 C -0.26 -6.47 3.67 -19.83 -0.07 -6.54 16 9 C 0.58 18.46 5.39 86.70 0.47 18.92 16 10 O -0.58 -24.91 16.52 -3.99 -0.07 -24.98 16 11 N -0.59 -16.67 2.98 -823.57 -2.45 -19.12 16 12 C 0.11 1.93 6.31 86.22 0.54 2.47 16 13 C -0.12 -2.17 6.06 30.53 0.19 -1.99 16 14 C -0.12 -3.37 5.13 30.62 0.16 -3.21 16 15 C 0.17 6.41 2.74 45.06 0.12 6.54 16 16 H 0.05 1.96 7.87 -2.39 -0.02 1.94 16 17 N -0.61 -29.61 2.81 -702.44 -1.98 -31.59 16 18 C 0.18 8.52 7.91 127.77 1.01 9.53 16 19 C -0.27 -14.61 9.59 84.03 0.81 -13.80 16 20 H 0.07 3.63 7.82 -2.91 -0.02 3.61 16 21 C -0.05 -2.81 5.12 84.86 0.43 -2.37 16 22 N -0.94 -55.74 10.64 21.65 0.23 -55.51 16 23 Si 0.97 45.74 29.57 68.60 2.03 47.76 16 24 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 25 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 26 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 27 C 0.11 4.24 5.79 86.35 0.50 4.74 16 28 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.08 1.43 7.17 -2.38 -0.02 1.41 16 30 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.25 1.50 8.06 -2.91 -0.02 1.47 16 32 H 0.43 5.98 9.06 -74.06 -0.67 5.31 16 33 H 0.09 1.31 6.23 -2.39 -0.01 1.30 16 34 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.07 1.79 6.71 -2.39 -0.02 1.77 16 38 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 39 H 0.00 -0.09 7.42 -2.38 -0.02 -0.11 16 40 H 0.02 0.90 7.22 -2.39 -0.02 0.89 16 41 H 0.04 1.48 6.45 -2.38 -0.02 1.46 16 42 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 43 H 0.07 2.45 7.51 -2.38 -0.02 2.44 16 44 H 0.05 2.18 7.00 -2.39 -0.02 2.17 16 Total: -1.00 -77.87 357.85 -0.17 -78.04 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 0.36 Total: 8.45 kcal Atomic # 6 Polarization: 27.70 SS G_CDS: 8.03 Total: 35.72 kcal Atomic # 7 Polarization: -122.92 SS G_CDS: -9.40 Total: -132.32 kcal Atomic # 8 Polarization: -36.47 SS G_CDS: -1.19 Total: -37.65 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -77.87 -0.17 -78.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027540375.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.742 kcal (2) G-P(sol) polarization free energy of solvation -77.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds