Wall clock time and date at job start Tue Mar 31 2020 13:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32217 * 120.50933 * 2 1 4 4 C 1.31909 * 121.14231 * 179.76087 * 3 2 1 5 5 N 1.31749 * 122.19578 * 0.52690 * 4 3 2 6 6 C 1.32743 * 120.87259 * 359.74362 * 5 4 3 7 7 O 1.35284 * 120.61785 * 179.97438 * 6 5 4 8 8 C 1.39764 * 120.50953 * 180.27765 * 2 1 3 9 9 C 1.47535 * 120.98357 * 359.97438 * 8 2 1 10 10 O 1.21592 * 119.99716 * 89.99367 * 9 8 2 11 11 N 1.34778 * 120.00232 * 270.00400 * 9 8 2 12 12 C 1.46930 * 120.62636 * 359.97438 * 11 9 8 13 13 C 1.53194 * 108.77161 * 126.37493 * 12 11 9 14 14 C 1.53039 * 109.31298 * 54.63218 * 13 12 11 15 15 C 1.53036 * 109.53937 * 298.63479 * 14 13 12 16 16 H 1.09004 * 109.49993 * 301.37819 * 15 14 13 17 17 N 1.46498 * 109.49678 * 181.31677 * 15 14 13 18 18 C 1.46496 * 120.00279 * 300.00283 * 17 15 14 19 19 C 1.36943 * 120.00046 * 120.00017 * 17 15 14 20 20 H 1.07997 * 120.00069 * 22.00287 * 19 17 15 21 21 C 1.38806 * 120.00292 * 201.99905 * 19 17 15 22 22 N 1.31628 * 119.99945 * 12.69339 * 21 19 17 23 23 Si 1.86797 * 120.00331 * 192.69420 * 21 19 17 24 24 H 1.48495 * 109.47238 * 60.00096 * 23 21 19 25 25 H 1.48504 * 109.47330 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46985 * 299.99981 * 23 21 19 27 27 C 1.46923 * 120.63107 * 179.71571 * 11 9 8 28 28 H 1.09008 * 109.47217 * 269.71971 * 1 2 3 29 29 H 1.09004 * 109.47167 * 149.72367 * 1 2 3 30 30 H 1.08998 * 109.47272 * 29.72285 * 1 2 3 31 31 H 1.08003 * 118.90164 * 180.29672 * 4 3 2 32 32 H 0.96700 * 113.99973 * 270.02262 * 7 6 5 33 33 H 1.08992 * 109.58560 * 246.15694 * 12 11 9 34 34 H 1.08996 * 109.59111 * 6.58873 * 12 11 9 35 35 H 1.09001 * 109.50011 * 174.58697 * 13 12 11 36 36 H 1.09008 * 109.49678 * 294.64881 * 13 12 11 37 37 H 1.09000 * 109.46073 * 58.66120 * 14 13 12 38 38 H 1.09004 * 109.45438 * 178.61623 * 14 13 12 39 39 H 1.08996 * 109.47365 * 94.32649 * 18 17 15 40 40 H 1.09006 * 109.47129 * 214.33036 * 18 17 15 41 41 H 1.09001 * 109.46940 * 334.32461 * 18 17 15 42 42 H 0.96999 * 120.00043 * 179.97438 * 22 21 19 43 43 H 1.08998 * 109.58857 * 353.41857 * 27 11 9 44 44 H 1.09009 * 109.58460 * 113.84147 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4972 1.1537 0.0047 5 7 4.2115 0.0466 -0.0006 6 6 3.6234 -1.1434 -0.0060 7 8 4.3619 -2.2769 -0.0120 8 6 2.2165 -1.2041 -0.0058 9 6 1.5124 -2.5006 -0.0116 10 8 1.2217 -3.0299 -1.0669 11 7 1.1911 -3.0982 1.1530 12 6 1.5360 -2.4710 2.4362 13 6 0.2678 -2.3635 3.2889 14 6 -0.3744 -3.7466 3.4177 15 6 -0.7672 -4.2597 2.0304 16 1 -1.4600 -3.5580 1.5657 17 7 -1.4102 -5.5698 2.1577 18 6 -0.6788 -6.6899 2.7548 19 6 -2.6951 -5.7475 1.7185 20 1 -3.1114 -5.0770 0.9813 21 6 -3.4624 -6.7895 2.2207 22 7 -3.0596 -7.4494 3.2860 23 14 -5.0668 -7.2552 1.3849 24 1 -4.7957 -7.6540 -0.0196 25 1 -5.6917 -8.3903 2.1105 26 1 -5.9887 -6.0912 1.3998 27 6 0.4844 -4.3862 1.1635 28 1 -0.3634 -0.0050 1.0277 29 1 -0.3634 -0.8875 -0.5181 30 1 -0.3634 0.8924 -0.5095 31 1 4.0087 2.1049 0.0094 32 1 4.5763 -2.6019 -0.8971 33 1 2.2742 -3.0824 2.9550 34 1 1.9425 -1.4754 2.2589 35 1 0.5260 -1.9886 4.2793 36 1 -0.4340 -1.6789 2.8124 37 1 0.3369 -4.4364 3.8720 38 1 -1.2635 -3.6771 4.0444 39 1 -0.9118 -6.7506 3.8178 40 1 -0.9727 -7.6182 2.2648 41 1 0.3923 -6.5344 2.6258 42 1 -3.5960 -8.1773 3.6372 43 1 0.1976 -4.6539 0.1466 44 1 1.1355 -5.1568 1.5765 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027540378.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:28 Heat of formation + Delta-G solvation = 5.096818 kcal Electronic energy + Delta-G solvation = -28117.866756 eV Core-core repulsion = 24264.890317 eV Total energy + Delta-G solvation = -3852.976438 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.75171 -39.77472 -38.07481 -37.50215 -35.17874 -34.47877 -32.63715 -31.98481 -31.36169 -29.23434 -28.60813 -26.11637 -25.95265 -24.52511 -23.51395 -23.12688 -21.73132 -20.26357 -19.22732 -18.84144 -18.33000 -17.52549 -16.76636 -16.58451 -16.14702 -15.35183 -15.11135 -14.62309 -14.50847 -14.17112 -14.10257 -13.73437 -13.63880 -13.46112 -13.11725 -12.95609 -12.71879 -12.61234 -12.43868 -12.31668 -12.02740 -11.52416 -11.12343 -11.01155 -10.88333 -10.70828 -10.66659 -10.46337 -10.37552 -10.21309 -10.04416 -9.91940 -9.80715 -9.71046 -9.57455 -8.66722 -8.43876 -6.80253 -5.74806 -3.20971 0.27320 0.54820 2.40264 2.90552 2.93908 3.31883 3.38497 3.43894 3.45531 3.62998 3.90290 4.21251 4.47173 4.61247 4.79056 4.85617 4.98059 5.08714 5.23677 5.28740 5.39134 5.41395 5.46532 5.52973 5.60232 5.70429 5.78941 5.89254 5.93222 6.09317 6.15037 6.30647 6.41147 6.49004 6.55091 6.73211 6.87185 6.93781 6.96524 7.36078 7.42007 7.63098 7.69844 7.79100 8.07819 8.36854 9.20618 9.83066 10.30909 11.29985 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022403 B = 0.003407 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.514646 B = 8215.310362 C = 8422.154072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.227 3.773 3 N -0.525 5.525 4 C 0.331 3.669 5 N -0.542 5.542 6 C 0.395 3.605 7 O -0.469 6.469 8 C -0.240 4.240 9 C 0.574 3.426 10 O -0.532 6.532 11 N -0.587 5.587 12 C 0.112 3.888 13 C -0.131 4.131 14 C -0.132 4.132 15 C 0.170 3.830 16 H 0.065 0.935 17 N -0.592 5.592 18 C 0.162 3.838 19 C -0.257 4.257 20 H 0.068 0.932 21 C 0.004 3.996 22 N -0.907 5.907 23 Si 0.905 3.095 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.283 1.283 27 C 0.096 3.904 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.206 0.794 32 H 0.414 0.586 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.030 0.970 40 H 0.044 0.956 41 H -0.002 1.002 42 H 0.253 0.747 43 H 0.092 0.908 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.917 15.515 -3.212 20.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.081 3.919 3 N -0.241 5.241 4 C 0.043 3.957 5 N -0.267 5.267 6 C 0.207 3.793 7 O -0.277 6.277 8 C -0.249 4.249 9 C 0.359 3.641 10 O -0.409 6.409 11 N -0.319 5.319 12 C -0.011 4.011 13 C -0.170 4.170 14 C -0.172 4.172 15 C 0.060 3.940 16 H 0.084 0.916 17 N -0.313 5.313 18 C 0.018 3.982 19 C -0.386 4.386 20 H 0.086 0.914 21 C -0.194 4.194 22 N -0.552 5.552 23 Si 0.735 3.265 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.209 1.209 27 C -0.027 4.027 28 H 0.114 0.886 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.222 0.778 32 H 0.276 0.724 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.063 0.937 41 H 0.016 0.984 42 H 0.063 0.937 43 H 0.111 0.889 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.103 15.829 -3.085 20.778 hybrid contribution -0.955 -1.164 -0.654 1.641 sum 12.147 14.665 -3.739 19.406 Atomic orbital electron populations 1.20973 0.86726 1.05124 1.04636 1.21849 0.97877 0.85883 0.86292 1.68313 1.10144 1.29385 1.16234 1.24960 0.86298 0.96085 0.88329 1.68051 1.42655 0.98648 1.17387 1.19383 0.85505 0.85935 0.88458 1.84627 1.72481 1.35999 1.34629 1.21834 0.95077 0.97203 1.10769 1.17556 0.78927 0.83352 0.84275 1.90835 1.54621 1.64911 1.30501 1.48124 1.56137 1.22598 1.05030 1.21711 0.97791 0.97411 0.84218 1.21949 0.96398 0.99408 0.99277 1.22137 1.00626 0.94153 1.00297 1.20483 0.91951 0.89032 0.92485 0.91629 1.43877 1.12161 1.03974 1.71319 1.20799 0.89368 0.90227 0.97853 1.19184 0.88800 1.13286 1.17348 0.91378 1.24985 0.97985 1.00067 0.96406 1.70065 1.38997 1.24265 1.21895 0.86325 0.83330 0.77851 0.78971 1.21010 1.21649 1.20941 1.22464 0.94700 0.82202 1.03374 0.88619 0.89351 0.88920 0.77797 0.72446 0.91004 0.91486 0.91127 0.91744 0.92328 0.91242 0.95175 0.93719 0.98362 0.93688 0.88944 0.91416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 9.85 36.00 0.35 -0.83 16 2 C 0.23 2.62 6.72 -81.86 -0.55 2.07 16 3 N -0.52 -5.61 10.36 -10.53 -0.11 -5.72 16 4 C 0.33 3.09 12.27 -92.09 -1.13 1.96 16 5 N -0.54 -6.05 10.45 -14.31 -0.15 -6.20 16 6 C 0.40 4.74 7.85 -16.18 -0.13 4.61 16 7 O -0.47 -5.16 13.10 -17.55 -0.23 -5.39 16 8 C -0.24 -3.06 3.67 -104.56 -0.38 -3.45 16 9 C 0.57 8.75 5.40 -12.47 -0.07 8.68 16 10 O -0.53 -9.85 16.52 5.28 0.09 -9.76 16 11 N -0.59 -8.75 2.98 -174.24 -0.52 -9.26 16 12 C 0.11 1.40 6.34 -3.71 -0.02 1.37 16 13 C -0.13 -1.66 6.08 -26.61 -0.16 -1.82 16 14 C -0.13 -2.21 5.15 -26.69 -0.14 -2.35 16 15 C 0.17 3.30 2.73 -68.02 -0.19 3.11 16 16 H 0.07 1.33 7.86 -51.93 -0.41 0.92 16 17 N -0.59 -14.24 2.82 -173.59 -0.49 -14.73 16 18 C 0.16 3.85 8.03 59.84 0.48 4.33 16 19 C -0.26 -6.90 9.60 -15.06 -0.14 -7.04 16 20 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 21 C 0.00 0.11 5.10 -17.43 -0.09 0.02 16 22 N -0.91 -25.90 10.64 55.49 0.59 -25.31 16 23 Si 0.91 21.66 29.57 -169.99 -5.03 16.63 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 C 0.10 1.69 5.77 -3.92 -0.02 1.67 16 28 H 0.10 0.87 8.14 -51.92 -0.42 0.44 16 29 H 0.09 1.03 7.18 -51.93 -0.37 0.66 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.21 1.08 8.06 -52.48 -0.42 0.66 16 32 H 0.41 2.82 9.06 45.56 0.41 3.23 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.77 6.23 -51.93 -0.32 0.45 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 37 H 0.06 1.00 7.72 -51.93 -0.40 0.60 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.03 0.77 7.41 -51.93 -0.38 0.39 16 40 H 0.04 1.16 7.21 -51.93 -0.37 0.78 16 41 H 0.00 -0.04 6.35 -51.93 -0.33 -0.37 16 42 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.09 1.84 7.00 -51.93 -0.36 1.48 16 44 H 0.07 1.20 6.48 -51.92 -0.34 0.87 16 LS Contribution 357.84 15.07 5.39 5.39 Total: -1.00 -32.63 357.84 -8.03 -40.66 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -5.39 Total: 1.37 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: -2.19 Total: 12.33 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: -0.68 Total: -61.23 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.14 Total: -15.15 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.63 -8.03 -40.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027540378.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.754 kcal (2) G-P(sol) polarization free energy of solvation -32.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds