Wall clock time and date at job start Tue Mar 31 2020 13:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32217 * 120.50933 * 2 1 4 4 C 1.31909 * 121.14231 * 179.76087 * 3 2 1 5 5 N 1.31749 * 122.19578 * 0.52690 * 4 3 2 6 6 C 1.32743 * 120.87259 * 359.74362 * 5 4 3 7 7 O 1.35284 * 120.61785 * 179.97438 * 6 5 4 8 8 C 1.39764 * 120.50953 * 180.27765 * 2 1 3 9 9 C 1.47535 * 120.98357 * 359.97438 * 8 2 1 10 10 O 1.21592 * 119.99716 * 89.99367 * 9 8 2 11 11 N 1.34778 * 120.00232 * 270.00400 * 9 8 2 12 12 C 1.46930 * 120.62636 * 359.97438 * 11 9 8 13 13 C 1.53194 * 108.77161 * 126.37493 * 12 11 9 14 14 C 1.53039 * 109.31298 * 54.63218 * 13 12 11 15 15 C 1.53036 * 109.53937 * 298.63479 * 14 13 12 16 16 H 1.09004 * 109.49993 * 301.37819 * 15 14 13 17 17 N 1.46498 * 109.49678 * 181.31677 * 15 14 13 18 18 C 1.46496 * 120.00279 * 300.00283 * 17 15 14 19 19 C 1.36943 * 120.00046 * 120.00017 * 17 15 14 20 20 H 1.07997 * 120.00069 * 22.00287 * 19 17 15 21 21 C 1.38806 * 120.00292 * 201.99905 * 19 17 15 22 22 N 1.31628 * 119.99945 * 12.69339 * 21 19 17 23 23 Si 1.86797 * 120.00331 * 192.69420 * 21 19 17 24 24 H 1.48495 * 109.47238 * 60.00096 * 23 21 19 25 25 H 1.48504 * 109.47330 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46985 * 299.99981 * 23 21 19 27 27 C 1.46923 * 120.63107 * 179.71571 * 11 9 8 28 28 H 1.09008 * 109.47217 * 269.71971 * 1 2 3 29 29 H 1.09004 * 109.47167 * 149.72367 * 1 2 3 30 30 H 1.08998 * 109.47272 * 29.72285 * 1 2 3 31 31 H 1.08003 * 118.90164 * 180.29672 * 4 3 2 32 32 H 0.96700 * 113.99973 * 270.02262 * 7 6 5 33 33 H 1.08992 * 109.58560 * 246.15694 * 12 11 9 34 34 H 1.08996 * 109.59111 * 6.58873 * 12 11 9 35 35 H 1.09001 * 109.50011 * 174.58697 * 13 12 11 36 36 H 1.09008 * 109.49678 * 294.64881 * 13 12 11 37 37 H 1.09000 * 109.46073 * 58.66120 * 14 13 12 38 38 H 1.09004 * 109.45438 * 178.61623 * 14 13 12 39 39 H 1.08996 * 109.47365 * 94.32649 * 18 17 15 40 40 H 1.09006 * 109.47129 * 214.33036 * 18 17 15 41 41 H 1.09001 * 109.46940 * 334.32461 * 18 17 15 42 42 H 0.96999 * 120.00043 * 179.97438 * 22 21 19 43 43 H 1.08998 * 109.58857 * 353.41857 * 27 11 9 44 44 H 1.09009 * 109.58460 * 113.84147 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4972 1.1537 0.0047 5 7 4.2115 0.0466 -0.0006 6 6 3.6234 -1.1434 -0.0060 7 8 4.3619 -2.2769 -0.0120 8 6 2.2165 -1.2041 -0.0058 9 6 1.5124 -2.5006 -0.0116 10 8 1.2217 -3.0299 -1.0669 11 7 1.1911 -3.0982 1.1530 12 6 1.5360 -2.4710 2.4362 13 6 0.2678 -2.3635 3.2889 14 6 -0.3744 -3.7466 3.4177 15 6 -0.7672 -4.2597 2.0304 16 1 -1.4600 -3.5580 1.5657 17 7 -1.4102 -5.5698 2.1577 18 6 -0.6788 -6.6899 2.7548 19 6 -2.6951 -5.7475 1.7185 20 1 -3.1114 -5.0770 0.9813 21 6 -3.4624 -6.7895 2.2207 22 7 -3.0596 -7.4494 3.2860 23 14 -5.0668 -7.2552 1.3849 24 1 -4.7957 -7.6540 -0.0196 25 1 -5.6917 -8.3903 2.1105 26 1 -5.9887 -6.0912 1.3998 27 6 0.4844 -4.3862 1.1635 28 1 -0.3634 -0.0050 1.0277 29 1 -0.3634 -0.8875 -0.5181 30 1 -0.3634 0.8924 -0.5095 31 1 4.0087 2.1049 0.0094 32 1 4.5763 -2.6019 -0.8971 33 1 2.2742 -3.0824 2.9550 34 1 1.9425 -1.4754 2.2589 35 1 0.5260 -1.9886 4.2793 36 1 -0.4340 -1.6789 2.8124 37 1 0.3369 -4.4364 3.8720 38 1 -1.2635 -3.6771 4.0444 39 1 -0.9118 -6.7506 3.8178 40 1 -0.9727 -7.6182 2.2648 41 1 0.3923 -6.5344 2.6258 42 1 -3.5960 -8.1773 3.6372 43 1 0.1976 -4.6539 0.1466 44 1 1.1355 -5.1568 1.5765 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027540378.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:28 Heat of formation + Delta-G solvation = -19.027086 kcal Electronic energy + Delta-G solvation = -28118.912847 eV Core-core repulsion = 24264.890317 eV Total energy + Delta-G solvation = -3854.022529 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.65385 -40.97482 -39.01854 -38.81319 -36.82763 -35.35418 -34.06614 -33.00418 -32.94474 -30.60355 -29.71821 -28.05566 -27.10009 -25.69724 -25.09286 -23.96472 -23.11120 -21.62456 -20.22128 -20.03097 -19.20880 -18.89499 -18.54004 -17.52929 -17.29233 -16.88889 -16.23205 -15.95382 -15.76755 -15.45281 -15.23430 -15.21732 -14.96304 -14.47731 -14.45134 -14.05137 -13.89105 -13.80772 -13.78946 -13.64990 -13.15650 -12.86235 -12.83167 -12.53659 -12.45438 -12.30196 -12.18520 -11.97598 -11.82208 -11.75368 -11.49201 -11.41783 -11.16306 -10.65183 -10.59394 -10.52868 -9.83808 -8.77604 -7.82996 -5.30784 -0.56746 -0.29743 1.23816 1.46060 1.48748 1.54806 1.76097 2.11292 2.47847 2.51300 2.87009 3.09167 3.18463 3.30619 3.56700 3.73870 3.92983 3.97272 4.00435 4.05708 4.15167 4.22351 4.31598 4.49899 4.52463 4.60044 4.63824 4.73939 4.79217 4.86981 4.90109 4.97479 5.09640 5.14814 5.27673 5.33703 5.45352 5.47258 5.63608 5.64416 5.73120 6.21698 6.27232 6.32351 6.83284 6.87791 7.14878 7.85993 8.28408 9.19623 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022403 B = 0.003407 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.514646 B = 8215.310362 C = 8422.154072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.230 3.770 3 N -0.529 5.529 4 C 0.339 3.661 5 N -0.552 5.552 6 C 0.399 3.601 7 O -0.479 6.479 8 C -0.258 4.258 9 C 0.580 3.420 10 O -0.572 6.572 11 N -0.586 5.586 12 C 0.113 3.887 13 C -0.120 4.120 14 C -0.122 4.122 15 C 0.169 3.831 16 H 0.053 0.947 17 N -0.608 5.608 18 C 0.180 3.820 19 C -0.266 4.266 20 H 0.066 0.934 21 C -0.047 4.047 22 N -0.935 5.935 23 Si 0.965 3.035 24 H -0.282 1.282 25 H -0.293 1.293 26 H -0.275 1.275 27 C 0.113 3.887 28 H 0.108 0.892 29 H 0.067 0.933 30 H 0.108 0.892 31 H 0.246 0.754 32 H 0.430 0.570 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.047 0.953 39 H 0.007 0.993 40 H 0.014 0.986 41 H 0.029 0.971 42 H 0.248 0.752 43 H 0.065 0.935 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.191 18.117 -3.037 23.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.084 3.916 3 N -0.245 5.245 4 C 0.053 3.947 5 N -0.277 5.277 6 C 0.211 3.789 7 O -0.290 6.290 8 C -0.268 4.268 9 C 0.367 3.633 10 O -0.452 6.452 11 N -0.317 5.317 12 C -0.009 4.009 13 C -0.159 4.159 14 C -0.162 4.162 15 C 0.061 3.939 16 H 0.072 0.928 17 N -0.331 5.331 18 C 0.035 3.965 19 C -0.396 4.396 20 H 0.084 0.916 21 C -0.243 4.243 22 N -0.581 5.581 23 Si 0.794 3.206 24 H -0.209 1.209 25 H -0.219 1.219 26 H -0.201 1.201 27 C -0.012 4.012 28 H 0.127 0.873 29 H 0.086 0.914 30 H 0.127 0.873 31 H 0.262 0.738 32 H 0.294 0.706 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.119 0.881 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.026 0.974 40 H 0.033 0.967 41 H 0.047 0.953 42 H 0.058 0.942 43 H 0.084 0.916 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.412 18.481 -2.914 23.616 hybrid contribution -1.264 -1.880 -0.754 2.387 sum 13.148 16.601 -3.668 21.493 Atomic orbital electron populations 1.20996 0.86155 1.04857 1.05344 1.22013 0.98387 0.85748 0.85475 1.68429 1.10766 1.28550 1.16759 1.25840 0.86000 0.97024 0.85788 1.68192 1.42707 0.98657 1.18142 1.19459 0.85237 0.86500 0.87742 1.84573 1.72297 1.35975 1.36155 1.21585 0.95401 0.96014 1.13769 1.17869 0.78127 0.83855 0.83466 1.90809 1.56203 1.66212 1.31948 1.48112 1.55628 1.21658 1.06274 1.21869 0.97866 0.98349 0.82772 1.21889 0.96217 0.96634 1.01150 1.21938 1.00006 0.96730 0.97500 1.20607 0.92084 0.86780 0.94404 0.92850 1.44067 1.11738 1.05879 1.71385 1.20499 0.90935 0.89137 0.95931 1.19473 0.89953 1.13111 1.17029 0.91582 1.25683 1.01074 1.00365 0.97156 1.70216 1.40074 1.24684 1.23163 0.85375 0.79993 0.77470 0.77806 1.20853 1.21917 1.20064 1.21974 0.94127 0.83843 1.01218 0.87344 0.91442 0.87326 0.73805 0.70602 0.90044 0.89651 0.88094 0.91076 0.92476 0.93365 0.97449 0.96715 0.95252 0.94248 0.91626 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.17 9.85 71.23 0.70 -1.46 16 2 C 0.23 4.81 6.72 42.87 0.29 5.10 16 3 N -0.53 -9.66 10.36 -187.21 -1.94 -11.60 16 4 C 0.34 5.15 12.27 180.86 2.22 7.36 16 5 N -0.55 -10.72 10.45 -312.03 -3.26 -13.98 16 6 C 0.40 8.74 7.85 85.19 0.67 9.41 16 7 O -0.48 -9.75 13.10 -85.70 -1.12 -10.87 16 8 C -0.26 -6.18 3.67 -19.83 -0.07 -6.26 16 9 C 0.58 17.38 5.40 86.69 0.47 17.84 16 10 O -0.57 -21.58 16.52 -4.01 -0.07 -21.64 16 11 N -0.59 -16.90 2.98 -823.44 -2.45 -19.35 16 12 C 0.11 2.53 6.34 86.36 0.55 3.08 16 13 C -0.12 -2.72 6.08 30.67 0.19 -2.54 16 14 C -0.12 -3.98 5.15 30.62 0.16 -3.82 16 15 C 0.17 6.62 2.73 44.93 0.12 6.74 16 16 H 0.05 2.20 7.86 -2.38 -0.02 2.18 16 17 N -0.61 -29.94 2.82 -703.13 -1.98 -31.92 16 18 C 0.18 8.74 8.03 127.77 1.03 9.77 16 19 C -0.27 -14.59 9.60 84.03 0.81 -13.78 16 20 H 0.07 3.57 7.81 -2.91 -0.02 3.55 16 21 C -0.05 -2.65 5.10 84.86 0.43 -2.22 16 22 N -0.93 -54.78 10.64 21.65 0.23 -54.55 16 23 Si 0.97 45.25 29.57 68.60 2.03 47.28 16 24 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 25 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 26 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 27 C 0.11 4.00 5.77 86.23 0.50 4.50 16 28 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 29 H 0.07 1.56 7.18 -2.39 -0.02 1.54 16 30 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.25 1.45 8.06 -2.91 -0.02 1.43 16 32 H 0.43 5.34 9.06 -74.06 -0.67 4.67 16 33 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.09 1.68 6.23 -2.39 -0.01 1.67 16 35 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.06 1.87 7.72 -2.39 -0.02 1.86 16 38 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 39 H 0.01 0.38 7.41 -2.39 -0.02 0.36 16 40 H 0.01 0.77 7.21 -2.38 -0.02 0.75 16 41 H 0.03 1.21 6.35 -2.39 -0.02 1.19 16 42 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 43 H 0.07 2.70 7.00 -2.39 -0.02 2.68 16 44 H 0.07 2.40 6.48 -2.38 -0.02 2.39 16 Total: -1.00 -72.09 357.84 -0.15 -72.24 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.37 Total: 10.68 kcal Atomic # 6 Polarization: 25.68 SS G_CDS: 8.05 Total: 33.73 kcal Atomic # 7 Polarization: -122.01 SS G_CDS: -9.40 Total: -131.41 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -1.19 Total: -32.52 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -72.09 -0.15 -72.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027540378.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.212 kcal (2) G-P(sol) polarization free energy of solvation -72.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds