Wall clock time and date at job start Tue Mar 31 2020 12:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99601 * 2 1 4 4 H 1.48504 * 109.46770 * 239.99694 * 3 2 1 5 5 H 1.48497 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47246 * 119.99941 * 3 2 1 7 7 C 1.38809 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00084 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99957 * 0.02562 * 7 2 1 10 10 C 1.47425 * 125.65151 * 350.30417 * 9 7 2 11 11 C 1.54909 * 104.92926 * 204.09735 * 10 9 7 12 12 C 1.55273 * 101.52619 * 323.12664 * 11 10 9 13 13 C 1.47022 * 125.64555 * 170.33248 * 9 7 2 14 14 H 1.08996 * 109.88612 * 59.50082 * 13 9 7 15 15 C 1.52995 * 109.88396 * 298.33308 * 13 9 7 16 16 N 1.46505 * 109.47210 * 174.93094 * 15 13 9 17 17 C 1.34778 * 120.00001 * 184.87061 * 16 15 13 18 18 O 1.21680 * 119.99752 * 355.28446 * 17 16 15 19 19 C 1.46761 * 120.00039 * 175.29536 * 17 16 15 20 20 C 1.36943 * 126.93885 * 185.41451 * 19 17 16 21 21 N 1.33563 * 107.86277 * 179.84745 * 20 19 17 22 22 C 1.30248 * 109.65542 * 0.37885 * 21 20 19 23 23 N 1.35177 * 108.96717 * 359.81031 * 22 21 20 24 24 C 1.46504 * 123.69914 * 179.91368 * 23 22 21 25 25 C 1.53472 * 108.12361 * 343.75490 * 24 23 22 26 26 O 1.43047 * 109.61091 * 48.15024 * 25 24 23 27 27 C 1.43420 * 114.05673 * 290.03911 * 26 25 24 28 28 H 0.97002 * 120.00498 * 0.02562 * 1 2 3 29 29 H 1.08998 * 110.36158 * 322.99622 * 10 9 7 30 30 H 1.09008 * 110.36518 * 85.19992 * 10 9 7 31 31 H 1.08992 * 111.00283 * 81.12437 * 11 10 9 32 32 H 1.08997 * 111.00074 * 204.97225 * 11 10 9 33 33 H 1.09001 * 110.62382 * 277.00675 * 12 11 10 34 34 H 1.09000 * 110.75223 * 153.77839 * 12 11 10 35 35 H 1.08999 * 109.47416 * 294.92928 * 15 13 9 36 36 H 1.09005 * 109.47263 * 54.93403 * 15 13 9 37 37 H 0.96996 * 119.99946 * 4.86968 * 16 15 13 38 38 H 1.08003 * 126.06752 * 359.97438 * 20 19 17 39 39 H 1.08997 * 109.73701 * 103.40855 * 24 23 22 40 40 H 1.08999 * 109.73487 * 224.05326 * 24 23 22 41 41 H 1.08995 * 109.44965 * 168.19372 * 25 24 23 42 42 H 1.09000 * 109.44833 * 288.10911 * 25 24 23 43 43 H 1.09001 * 109.78978 * 169.21199 * 27 26 25 44 44 H 1.09004 * 109.79043 * 290.05445 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1268 -2.5417 0.2018 11 6 -0.3062 -3.9887 0.7249 12 6 0.7739 -4.7497 -0.0907 13 6 1.9173 -3.7190 -0.1996 14 1 2.6648 -3.9119 0.5699 15 6 2.5602 -3.7996 -1.5855 16 7 3.2506 -5.0837 -1.7297 17 6 3.9757 -5.3384 -2.8369 18 8 3.9875 -4.5385 -3.7537 19 6 4.7507 -6.5807 -2.9368 20 6 5.6114 -6.9352 -3.9412 21 7 6.1107 -8.1386 -3.6473 22 6 5.6062 -8.5594 -2.5226 23 7 4.7549 -7.6239 -2.0456 24 6 4.0062 -7.7685 -0.7947 25 6 4.0381 -9.2479 -0.3875 26 8 5.3792 -9.7390 -0.4673 27 6 5.8781 -9.8618 -1.8063 28 1 -0.4851 0.8400 -0.0004 29 1 -0.4854 -1.8242 0.9397 30 1 -0.6564 -2.4110 -0.7420 31 1 -0.1003 -4.0461 1.7936 32 1 -1.3045 -4.3643 0.5003 33 1 0.3953 -5.0116 -1.0787 34 1 1.1063 -5.6393 0.4443 35 1 1.7878 -3.7146 -2.3499 36 1 3.2771 -2.9867 -1.7014 37 1 3.1859 -5.7505 -1.0283 38 1 5.8465 -6.3453 -4.8149 39 1 4.4696 -7.1625 -0.0162 40 1 2.9747 -7.4495 -0.9441 41 1 3.6741 -9.3509 0.6347 42 1 3.4005 -9.8230 -1.0589 43 1 6.9509 -10.0538 -1.7843 44 1 5.3668 -10.6778 -2.3172 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027945780.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:28 Heat of formation + Delta-G solvation = 18.023827 kcal Electronic energy + Delta-G solvation = -27455.311860 eV Core-core repulsion = 23602.895978 eV Total energy + Delta-G solvation = -3852.415881 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.81365 -39.41253 -38.72323 -37.66801 -35.10832 -34.00743 -32.55893 -31.08893 -30.42732 -29.73206 -28.75280 -26.61729 -25.04316 -24.51446 -24.13085 -22.22288 -20.87972 -20.33837 -20.06205 -19.52039 -18.23806 -17.41500 -16.85705 -16.43031 -16.03963 -15.94651 -15.64438 -15.41963 -14.98554 -14.66258 -14.45410 -14.34512 -13.91167 -13.84455 -13.28550 -13.20234 -13.06155 -12.37966 -12.17987 -11.98217 -11.90072 -11.83606 -11.47530 -11.03782 -10.82878 -10.82026 -10.48324 -10.35494 -10.22128 -10.09569 -10.02591 -9.98528 -9.85922 -9.71952 -8.99308 -8.68835 -8.60580 -6.96097 -5.80639 -3.18704 1.09478 2.05786 2.55188 3.05659 3.17069 3.32882 3.37896 3.42466 3.43578 3.62476 3.84848 4.25884 4.37069 4.39020 4.44887 4.73128 4.86976 4.96705 4.98517 5.07217 5.21650 5.26018 5.31907 5.39078 5.52279 5.66998 5.68051 5.89389 5.99701 6.08099 6.15054 6.33384 6.35752 6.40672 6.44950 6.55713 6.61755 6.66554 6.90510 7.44910 7.47315 7.51322 7.66496 7.73730 8.18473 8.22006 9.10861 9.71258 10.35698 11.29074 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018393 B = 0.003232 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.915939 B = 8661.979567 C = 9555.858622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.001 4.001 3 Si 0.913 3.087 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.236 4.236 8 H 0.077 0.923 9 N -0.588 5.588 10 C 0.167 3.833 11 C -0.147 4.147 12 C -0.129 4.129 13 C 0.152 3.848 14 H 0.037 0.963 15 C 0.106 3.894 16 N -0.725 5.725 17 C 0.587 3.413 18 O -0.522 6.522 19 C -0.068 4.068 20 C 0.059 3.941 21 N -0.479 5.479 22 C 0.184 3.816 23 N -0.440 5.440 24 C 0.054 3.946 25 C 0.050 3.950 26 O -0.369 6.369 27 C 0.148 3.852 28 H 0.255 0.745 29 H 0.085 0.915 30 H 0.022 0.978 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.388 0.612 38 H 0.188 0.812 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.127 0.873 42 H 0.071 0.929 43 H 0.130 0.870 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.728 -21.628 0.713 22.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.198 4.198 3 Si 0.743 3.257 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.364 4.364 8 H 0.095 0.905 9 N -0.312 5.312 10 C 0.042 3.958 11 C -0.186 4.186 12 C -0.167 4.167 13 C 0.043 3.957 14 H 0.054 0.946 15 C -0.018 4.018 16 N -0.378 5.378 17 C 0.372 3.628 18 O -0.397 6.397 19 C -0.183 4.183 20 C -0.094 4.094 21 N -0.199 5.199 22 C -0.078 4.078 23 N -0.125 5.125 24 C -0.069 4.069 25 C -0.027 4.027 26 O -0.285 6.285 27 C 0.070 3.930 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.040 0.960 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.224 0.776 38 H 0.205 0.795 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.144 0.856 42 H 0.089 0.911 43 H 0.148 0.852 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.191 -21.184 -0.051 22.071 hybrid contribution -0.350 1.277 0.437 1.394 sum 5.842 -19.907 0.386 20.750 Atomic orbital electron populations 1.69908 1.04993 1.25441 1.56012 1.24847 0.95711 0.97868 1.01410 0.86191 0.78564 0.82900 0.78087 1.20900 1.21488 1.21037 1.18966 0.90453 0.82185 1.44775 0.90543 1.44494 1.03905 0.99891 1.82910 1.21598 0.84198 0.90902 0.99081 1.23024 0.97046 0.99485 0.99053 1.22670 0.97125 0.96888 1.00044 1.21110 0.93964 0.88121 0.92476 0.94562 1.22377 0.96435 0.82764 1.00264 1.46374 1.51158 1.20090 1.20174 1.16859 0.78949 0.83925 0.83093 1.90872 1.63802 1.47034 1.38005 1.21278 1.09163 0.92380 0.95515 1.22745 0.95293 0.92630 0.98770 1.69841 1.25418 1.11958 1.12645 1.24129 0.94159 0.95377 0.94171 1.45254 1.33784 1.15024 1.18425 1.23012 0.98152 1.01014 0.84712 1.23018 0.84663 0.90434 1.04626 1.88188 1.29109 1.85416 1.25823 1.21336 1.02347 0.88697 0.80596 0.93490 0.89730 0.95981 0.92201 0.92227 0.91784 0.92661 0.91536 0.90714 0.77597 0.79536 0.87697 0.87542 0.85555 0.91099 0.85200 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.16 10.39 55.49 0.58 -25.59 16 2 C 0.00 -0.04 5.48 -17.43 -0.10 -0.13 16 3 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.24 -6.34 9.73 -15.06 -0.15 -6.48 16 8 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.59 -14.15 3.13 -162.57 -0.51 -14.66 16 10 C 0.17 3.84 5.52 -2.53 -0.01 3.83 16 11 C -0.15 -2.54 7.10 -24.52 -0.17 -2.71 16 12 C -0.13 -1.98 6.10 -24.83 -0.15 -2.13 16 13 C 0.15 2.86 3.22 -66.95 -0.22 2.64 16 14 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 15 C 0.11 1.99 5.11 -4.04 -0.02 1.97 16 16 N -0.72 -10.83 5.40 -61.59 -0.33 -11.16 16 17 C 0.59 9.67 7.78 -12.82 -0.10 9.57 16 18 O -0.52 -10.57 16.92 5.21 0.09 -10.49 16 19 C -0.07 -0.95 6.95 -82.49 -0.57 -1.52 16 20 C 0.06 0.82 11.68 -17.27 -0.20 0.62 16 21 N -0.48 -6.33 11.19 -10.29 -0.12 -6.45 16 22 C 0.18 2.02 7.78 -155.30 -1.21 0.81 16 23 N -0.44 -4.87 3.16 -109.67 -0.35 -5.21 16 24 C 0.05 0.39 5.59 -3.79 -0.02 0.37 16 25 C 0.05 0.26 6.83 37.40 0.26 0.52 16 26 O -0.37 -2.70 10.78 -35.23 -0.38 -3.08 16 27 C 0.15 1.05 7.29 36.21 0.26 1.31 16 28 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.08 2.19 6.56 -51.93 -0.34 1.85 16 30 H 0.02 0.55 8.14 -51.92 -0.42 0.13 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.97 7.77 -51.93 -0.40 0.56 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 1.36 8.02 -51.93 -0.42 0.95 16 36 H 0.07 1.61 7.85 -51.93 -0.41 1.21 16 37 H 0.39 4.55 4.45 -40.82 -0.18 4.37 16 38 H 0.19 2.38 8.06 -52.48 -0.42 1.96 16 39 H 0.10 0.73 8.07 -51.93 -0.42 0.31 16 40 H 0.11 0.67 6.71 -51.93 -0.35 0.33 16 41 H 0.13 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 16 43 H 0.13 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 354.85 15.07 5.35 5.35 Total: -1.00 -33.93 354.85 -9.39 -43.32 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -6.29 Total: 2.47 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: -2.40 Total: 8.66 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: -0.73 Total: -63.07 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -0.29 Total: -13.57 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.93 -9.39 -43.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027945780.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.342 kcal (2) G-P(sol) polarization free energy of solvation -33.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds