Wall clock time and date at job start Tue Mar 31 2020 12:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99601 * 2 1 4 4 H 1.48504 * 109.46770 * 239.99694 * 3 2 1 5 5 H 1.48497 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47246 * 119.99941 * 3 2 1 7 7 C 1.38809 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00084 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99957 * 0.02562 * 7 2 1 10 10 C 1.47425 * 125.65151 * 350.30417 * 9 7 2 11 11 C 1.54909 * 104.92926 * 204.09735 * 10 9 7 12 12 C 1.55273 * 101.52619 * 323.12664 * 11 10 9 13 13 C 1.47022 * 125.64555 * 170.33248 * 9 7 2 14 14 H 1.08996 * 109.88612 * 59.50082 * 13 9 7 15 15 C 1.52995 * 109.88396 * 298.33308 * 13 9 7 16 16 N 1.46505 * 109.47210 * 174.93094 * 15 13 9 17 17 C 1.34778 * 120.00001 * 184.87061 * 16 15 13 18 18 O 1.21680 * 119.99752 * 355.28446 * 17 16 15 19 19 C 1.46761 * 120.00039 * 175.29536 * 17 16 15 20 20 C 1.36943 * 126.93885 * 185.41451 * 19 17 16 21 21 N 1.33563 * 107.86277 * 179.84745 * 20 19 17 22 22 C 1.30248 * 109.65542 * 0.37885 * 21 20 19 23 23 N 1.35177 * 108.96717 * 359.81031 * 22 21 20 24 24 C 1.46504 * 123.69914 * 179.91368 * 23 22 21 25 25 C 1.53472 * 108.12361 * 343.75490 * 24 23 22 26 26 O 1.43047 * 109.61091 * 48.15024 * 25 24 23 27 27 C 1.43420 * 114.05673 * 290.03911 * 26 25 24 28 28 H 0.97002 * 120.00498 * 0.02562 * 1 2 3 29 29 H 1.08998 * 110.36158 * 322.99622 * 10 9 7 30 30 H 1.09008 * 110.36518 * 85.19992 * 10 9 7 31 31 H 1.08992 * 111.00283 * 81.12437 * 11 10 9 32 32 H 1.08997 * 111.00074 * 204.97225 * 11 10 9 33 33 H 1.09001 * 110.62382 * 277.00675 * 12 11 10 34 34 H 1.09000 * 110.75223 * 153.77839 * 12 11 10 35 35 H 1.08999 * 109.47416 * 294.92928 * 15 13 9 36 36 H 1.09005 * 109.47263 * 54.93403 * 15 13 9 37 37 H 0.96996 * 119.99946 * 4.86968 * 16 15 13 38 38 H 1.08003 * 126.06752 * 359.97438 * 20 19 17 39 39 H 1.08997 * 109.73701 * 103.40855 * 24 23 22 40 40 H 1.08999 * 109.73487 * 224.05326 * 24 23 22 41 41 H 1.08995 * 109.44965 * 168.19372 * 25 24 23 42 42 H 1.09000 * 109.44833 * 288.10911 * 25 24 23 43 43 H 1.09001 * 109.78978 * 169.21199 * 27 26 25 44 44 H 1.09004 * 109.79043 * 290.05445 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1268 -2.5417 0.2018 11 6 -0.3062 -3.9887 0.7249 12 6 0.7739 -4.7497 -0.0907 13 6 1.9173 -3.7190 -0.1996 14 1 2.6648 -3.9119 0.5699 15 6 2.5602 -3.7996 -1.5855 16 7 3.2506 -5.0837 -1.7297 17 6 3.9757 -5.3384 -2.8369 18 8 3.9875 -4.5385 -3.7537 19 6 4.7507 -6.5807 -2.9368 20 6 5.6114 -6.9352 -3.9412 21 7 6.1107 -8.1386 -3.6473 22 6 5.6062 -8.5594 -2.5226 23 7 4.7549 -7.6239 -2.0456 24 6 4.0062 -7.7685 -0.7947 25 6 4.0381 -9.2479 -0.3875 26 8 5.3792 -9.7390 -0.4673 27 6 5.8781 -9.8618 -1.8063 28 1 -0.4851 0.8400 -0.0004 29 1 -0.4854 -1.8242 0.9397 30 1 -0.6564 -2.4110 -0.7420 31 1 -0.1003 -4.0461 1.7936 32 1 -1.3045 -4.3643 0.5003 33 1 0.3953 -5.0116 -1.0787 34 1 1.1063 -5.6393 0.4443 35 1 1.7878 -3.7146 -2.3499 36 1 3.2771 -2.9867 -1.7014 37 1 3.1859 -5.7505 -1.0283 38 1 5.8465 -6.3453 -4.8149 39 1 4.4696 -7.1625 -0.0162 40 1 2.9747 -7.4495 -0.9441 41 1 3.6741 -9.3509 0.6347 42 1 3.4005 -9.8230 -1.0589 43 1 6.9509 -10.0538 -1.7843 44 1 5.3668 -10.6778 -2.3172 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027945780.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:27 Heat of formation + Delta-G solvation = -6.548658 kcal Electronic energy + Delta-G solvation = -27456.377402 eV Core-core repulsion = 23602.895978 eV Total energy + Delta-G solvation = -3853.481424 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.70741 -40.74800 -39.43570 -39.13879 -36.27491 -35.14325 -34.39980 -32.04412 -31.44467 -31.08557 -30.26390 -27.49364 -26.70261 -25.76141 -25.10641 -23.39236 -22.18208 -21.74910 -21.23228 -20.76219 -19.24078 -18.66475 -18.06560 -17.50065 -17.37153 -16.77085 -16.66793 -16.37265 -16.30249 -15.96488 -15.74563 -15.61443 -15.27475 -14.80440 -14.67726 -14.26489 -13.99913 -13.81467 -13.66129 -13.49404 -13.08399 -12.93091 -12.89996 -12.69948 -12.28106 -12.08789 -11.92522 -11.76662 -11.71927 -11.47443 -11.44940 -11.26517 -11.15444 -10.82711 -10.72270 -10.38035 -9.64565 -8.92883 -7.88575 -5.27129 0.05592 1.26857 1.42828 1.46029 1.51481 1.56704 1.88411 2.11722 2.46955 2.63278 2.95908 3.24395 3.28134 3.40946 3.68555 3.78849 3.87823 3.90833 3.94504 4.06678 4.21789 4.28437 4.30519 4.35624 4.49900 4.51450 4.59354 4.67039 4.69990 4.80064 4.88721 4.94393 5.07727 5.10566 5.23165 5.29675 5.44667 5.47840 5.66505 5.70657 5.78394 5.87861 6.21163 6.27148 6.70056 6.93724 7.06909 7.73853 8.37026 9.19406 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018393 B = 0.003232 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.915939 B = 8661.979567 C = 9555.858622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.058 4.058 3 Si 0.970 3.030 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.242 4.242 8 H 0.076 0.924 9 N -0.610 5.610 10 C 0.166 3.834 11 C -0.131 4.131 12 C -0.116 4.116 13 C 0.148 3.852 14 H 0.051 0.949 15 C 0.125 3.875 16 N -0.706 5.706 17 C 0.589 3.411 18 O -0.570 6.570 19 C -0.088 4.088 20 C 0.051 3.949 21 N -0.504 5.504 22 C 0.197 3.803 23 N -0.437 5.437 24 C 0.039 3.961 25 C 0.051 3.949 26 O -0.378 6.378 27 C 0.149 3.851 28 H 0.248 0.752 29 H 0.048 0.952 30 H -0.012 1.012 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.110 0.890 35 H 0.043 0.957 36 H 0.038 0.962 37 H 0.408 0.592 38 H 0.186 0.814 39 H 0.112 0.888 40 H 0.120 0.880 41 H 0.157 0.843 42 H 0.084 0.916 43 H 0.144 0.856 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.237 -25.194 2.469 26.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.252 4.252 3 Si 0.799 3.201 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.199 1.199 7 C -0.371 4.371 8 H 0.094 0.906 9 N -0.335 5.335 10 C 0.041 3.959 11 C -0.170 4.170 12 C -0.154 4.154 13 C 0.041 3.959 14 H 0.069 0.931 15 C -0.001 4.001 16 N -0.360 5.360 17 C 0.376 3.624 18 O -0.449 6.449 19 C -0.204 4.204 20 C -0.103 4.103 21 N -0.224 5.224 22 C -0.067 4.067 23 N -0.121 5.121 24 C -0.082 4.082 25 C -0.026 4.026 26 O -0.295 6.295 27 C 0.071 3.929 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.006 0.994 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.128 0.872 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.247 0.753 38 H 0.203 0.797 39 H 0.130 0.870 40 H 0.138 0.862 41 H 0.175 0.825 42 H 0.103 0.897 43 H 0.161 0.839 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.706 -24.818 1.762 25.768 hybrid contribution -0.450 2.278 -0.105 2.325 sum 6.256 -22.540 1.657 23.450 Atomic orbital electron populations 1.70121 1.06117 1.25394 1.57622 1.25585 0.96526 1.00814 1.02256 0.85278 0.77347 0.79371 0.78120 1.21089 1.21800 1.19937 1.19263 0.90739 0.83739 1.43321 0.90650 1.44751 1.04542 1.01087 1.83072 1.21425 0.83488 0.94306 0.96658 1.22879 0.99242 0.95121 0.99748 1.22690 0.94639 0.97284 1.00774 1.21341 0.95642 0.86835 0.92127 0.93131 1.21871 0.94984 0.83456 0.99768 1.46030 1.50368 1.19104 1.20517 1.17138 0.78529 0.84244 0.82464 1.90844 1.65407 1.48893 1.39718 1.20774 1.10002 0.92568 0.97096 1.22896 0.95338 0.93173 0.98932 1.69853 1.26515 1.11753 1.14252 1.25006 0.92328 0.96099 0.93247 1.45436 1.33847 1.13864 1.18968 1.23460 0.98427 1.03210 0.83108 1.23272 0.83954 0.88603 1.06765 1.88192 1.30332 1.85341 1.25602 1.21663 1.03699 0.87011 0.80511 0.94267 0.93407 0.99392 0.90967 0.89713 0.91436 0.87178 0.93831 0.94391 0.75274 0.79732 0.87032 0.86229 0.82502 0.89736 0.83881 0.86725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.11 10.39 21.65 0.22 -55.88 16 2 C -0.06 -3.29 5.48 84.86 0.46 -2.83 16 3 Si 0.97 46.19 29.55 68.60 2.03 48.21 16 4 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.24 -13.31 9.73 84.03 0.82 -12.49 16 8 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 9 N -0.61 -29.77 3.13 -668.27 -2.09 -31.86 16 10 C 0.17 7.79 5.52 86.85 0.48 8.26 16 11 C -0.13 -4.17 7.10 32.03 0.23 -3.95 16 12 C -0.12 -3.11 6.10 31.82 0.19 -2.92 16 13 C 0.15 5.36 3.22 45.34 0.15 5.50 16 14 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 15 C 0.13 4.72 5.11 86.38 0.44 5.17 16 16 N -0.71 -20.30 5.40 -467.00 -2.52 -22.82 16 17 C 0.59 19.49 7.78 86.47 0.67 20.16 16 18 O -0.57 -24.05 16.92 -4.29 -0.07 -24.13 16 19 C -0.09 -2.42 6.95 40.23 0.28 -2.14 16 20 C 0.05 1.42 11.68 84.13 0.98 2.40 16 21 N -0.50 -12.75 11.19 -186.48 -2.09 -14.84 16 22 C 0.20 3.83 7.78 138.29 1.08 4.91 16 23 N -0.44 -8.61 3.16 -500.87 -1.58 -10.20 16 24 C 0.04 0.42 5.59 86.54 0.48 0.90 16 25 C 0.05 0.28 6.83 72.14 0.49 0.77 16 26 O -0.38 -3.92 10.78 -148.98 -1.61 -5.52 16 27 C 0.15 1.56 7.29 71.37 0.52 2.08 16 28 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 29 H 0.05 2.57 6.56 -2.39 -0.02 2.55 16 30 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 31 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.07 1.81 7.77 -2.39 -0.02 1.79 16 34 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.04 1.84 8.02 -2.39 -0.02 1.82 16 36 H 0.04 1.70 7.85 -2.38 -0.02 1.69 16 37 H 0.41 8.35 4.45 -92.71 -0.41 7.94 16 38 H 0.19 4.95 8.06 -2.91 -0.02 4.92 16 39 H 0.11 1.09 8.07 -2.39 -0.02 1.07 16 40 H 0.12 0.96 6.71 -2.39 -0.02 0.94 16 41 H 0.16 -0.06 8.14 -2.39 -0.02 -0.07 16 42 H 0.08 0.29 8.10 -2.39 -0.02 0.27 16 43 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.12 0.67 8.14 -2.38 -0.02 0.65 16 Total: -1.00 -79.44 354.85 0.18 -79.26 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: 0.61 Total: 11.95 kcal Atomic # 6 Polarization: 18.54 SS G_CDS: 7.28 Total: 25.82 kcal Atomic # 7 Polarization: -127.54 SS G_CDS: -8.06 Total: -135.60 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -1.68 Total: -29.65 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.21 kcal Total: -79.44 0.18 -79.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027945780.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.715 kcal (2) G-P(sol) polarization free energy of solvation -79.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds