Wall clock time and date at job start Tue Mar 31 2020 12:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86808 * 120.00043 * 2 1 4 4 H 1.48502 * 109.47135 * 240.00402 * 3 2 1 5 5 H 1.48500 * 109.46846 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47311 * 120.00064 * 3 2 1 7 7 C 1.38808 * 120.00376 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00101 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99628 * 359.97438 * 7 2 1 10 10 C 1.47424 * 125.64935 * 13.56435 * 9 7 2 11 11 C 1.54912 * 104.83437 * 155.90552 * 10 9 7 12 12 C 1.55159 * 101.58141 * 37.00714 * 11 10 9 13 13 C 1.47031 * 125.64805 * 193.60384 * 9 7 2 14 14 H 1.09004 * 110.00624 * 300.51501 * 13 9 7 15 15 C 1.52996 * 109.87946 * 61.60594 * 13 9 7 16 16 N 1.46503 * 109.46708 * 182.37892 * 15 13 9 17 17 C 1.34777 * 120.00011 * 185.08684 * 16 15 13 18 18 O 1.21629 * 119.99884 * 0.02562 * 17 16 15 19 19 C 1.47322 * 120.00076 * 180.02562 * 17 16 15 20 20 C 1.36679 * 126.19502 * 180.02562 * 19 17 16 21 21 N 1.34505 * 106.73137 * 179.97438 * 20 19 17 22 22 C 1.36607 * 107.93523 * 0.08309 * 21 20 19 23 23 N 1.29484 * 108.90316 * 359.62439 * 22 21 20 24 24 C 1.51109 * 122.83735 * 179.86186 * 22 21 20 25 25 O 1.43432 * 107.76115 * 345.51073 * 24 22 21 26 26 C 1.43021 * 114.09030 * 49.73237 * 25 24 22 27 27 C 1.46645 * 128.71634 * 180.16131 * 21 20 19 28 28 H 0.97002 * 120.00528 * 359.97438 * 1 2 3 29 29 H 1.08999 * 110.36599 * 274.74158 * 10 9 7 30 30 H 1.09004 * 110.36664 * 37.06982 * 10 9 7 31 31 H 1.09008 * 111.00561 * 278.94166 * 11 10 9 32 32 H 1.08991 * 111.00876 * 155.08095 * 11 10 9 33 33 H 1.08995 * 110.72233 * 206.13475 * 12 11 10 34 34 H 1.09002 * 110.71853 * 82.86190 * 12 11 10 35 35 H 1.08996 * 109.47658 * 302.38100 * 15 13 9 36 36 H 1.08997 * 109.47163 * 62.38695 * 15 13 9 37 37 H 0.96998 * 120.00190 * 5.09359 * 16 15 13 38 38 H 1.07996 * 126.63692 * 359.97438 * 20 19 17 39 39 H 1.09000 * 109.80079 * 225.94476 * 24 22 21 40 40 H 1.09003 * 109.79769 * 105.07865 * 24 22 21 41 41 H 1.08994 * 109.43572 * 169.47538 * 26 25 24 42 42 H 1.09004 * 109.43082 * 49.61275 * 26 25 24 43 43 H 1.08998 * 109.73804 * 283.21374 * 27 21 20 44 44 H 1.08996 * 109.74272 * 43.91815 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1127 -2.5497 -0.2810 11 6 -0.2603 -4.0141 -0.7643 12 6 0.7666 -4.7456 0.1401 13 6 1.9029 -3.7108 0.2800 14 1 2.6952 -3.9312 -0.4355 15 6 2.4635 -3.7425 1.7032 16 7 3.0866 -5.0446 1.9535 17 6 3.5599 -5.3405 3.1803 18 8 3.4693 -4.5266 4.0796 19 6 4.1870 -6.6496 3.4319 20 6 4.7063 -7.0807 4.6204 21 7 5.1742 -8.3241 4.4102 22 6 4.9425 -8.6454 3.1029 23 7 4.3490 -7.6501 2.5251 24 6 5.3401 -9.9740 2.5027 25 8 6.2511 -10.6091 3.4104 26 6 5.7944 -10.6462 4.7652 27 6 5.8247 -9.2322 5.3604 28 1 -0.4851 0.8400 0.0004 29 1 -0.6964 -2.3888 0.6254 30 1 -0.4267 -1.8586 -1.0633 31 1 0.0095 -4.1075 -1.8163 32 1 -1.2700 -4.3841 -0.5872 33 1 1.1287 -5.6529 -0.3433 34 1 0.3305 -4.9732 1.1128 35 1 3.2084 -2.9552 1.8180 36 1 1.6544 -3.5840 2.4160 37 1 3.1586 -5.6938 1.2364 38 1 4.7354 -6.5296 5.5487 39 1 5.8283 -9.8136 1.5414 40 1 4.4565 -10.5981 2.3693 41 1 6.4431 -11.2993 5.3489 42 1 4.7744 -11.0298 4.7936 43 1 6.8575 -8.9214 5.5185 44 1 5.2869 -9.2202 6.3083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027966182.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:46 Heat of formation + Delta-G solvation = 11.918429 kcal Electronic energy + Delta-G solvation = -26662.609628 eV Core-core repulsion = 22809.928996 eV Total energy + Delta-G solvation = -3852.680631 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.74167 -39.28100 -38.53260 -37.44043 -34.67806 -34.04839 -32.40301 -31.04769 -30.29962 -29.56594 -28.60173 -26.60245 -24.90877 -24.30954 -23.93400 -22.43591 -20.31499 -20.07894 -19.78472 -19.40616 -18.26915 -17.08423 -16.97749 -16.39703 -16.23449 -15.77771 -15.41854 -15.13727 -14.85653 -14.62362 -14.26447 -14.21170 -13.92705 -13.75301 -13.34415 -13.03192 -12.87402 -12.33429 -12.00499 -11.90237 -11.80414 -11.64453 -11.21952 -10.89507 -10.83742 -10.72217 -10.48140 -10.15413 -10.07402 -10.03709 -9.92817 -9.76933 -9.68323 -9.59181 -8.77903 -8.54952 -8.40572 -6.78142 -5.70238 -3.06445 1.45359 2.09414 2.18076 3.04331 3.44161 3.48100 3.49477 3.51146 3.71161 3.79208 3.82600 4.21790 4.31781 4.48670 4.54848 4.73748 4.78866 4.94932 5.02534 5.05170 5.32990 5.41952 5.50645 5.61620 5.70981 5.71936 5.90428 6.12246 6.16507 6.20805 6.30663 6.35494 6.54793 6.60889 6.65124 6.72543 6.81911 6.92985 7.16247 7.50443 7.59216 7.66862 7.85287 8.01916 8.32121 8.62699 9.23880 9.84446 10.52063 11.41491 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023052 B = 0.002587 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.346545 B =10821.540636 C =11508.021049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.003 4.003 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.232 4.232 8 H 0.076 0.924 9 N -0.589 5.589 10 C 0.172 3.828 11 C -0.149 4.149 12 C -0.125 4.125 13 C 0.152 3.848 14 H 0.038 0.962 15 C 0.109 3.891 16 N -0.706 5.706 17 C 0.596 3.404 18 O -0.548 6.548 19 C -0.055 4.055 20 C 0.043 3.957 21 N -0.456 5.456 22 C 0.162 3.838 23 N -0.440 5.440 24 C 0.152 3.848 25 O -0.371 6.371 26 C 0.047 3.953 27 C 0.068 3.932 28 H 0.254 0.746 29 H 0.025 0.975 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.403 0.597 38 H 0.191 0.809 39 H 0.129 0.871 40 H 0.087 0.913 41 H 0.121 0.879 42 H 0.068 0.932 43 H 0.098 0.902 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.914 -24.926 8.761 28.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.200 4.200 3 Si 0.741 3.259 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.360 4.360 8 H 0.093 0.907 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.163 4.163 13 C 0.044 3.956 14 H 0.056 0.944 15 C -0.016 4.016 16 N -0.356 5.356 17 C 0.381 3.619 18 O -0.426 6.426 19 C -0.185 4.185 20 C -0.096 4.096 21 N -0.140 5.140 22 C -0.102 4.102 23 N -0.161 5.161 24 C 0.074 3.926 25 O -0.288 6.288 26 C -0.030 4.030 27 C -0.054 4.054 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.238 0.762 38 H 0.208 0.792 39 H 0.147 0.853 40 H 0.105 0.895 41 H 0.139 0.861 42 H 0.086 0.914 43 H 0.116 0.884 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.738 -24.163 8.589 27.430 hybrid contribution 0.522 0.807 0.880 1.303 sum 10.260 -23.355 9.469 27.210 Atomic orbital electron populations 1.69926 1.04993 1.25321 1.56115 1.24890 0.95678 0.97808 1.01587 0.86222 0.78567 0.83118 0.78013 1.21105 1.21607 1.20979 1.18958 0.90407 0.82228 1.44409 0.90665 1.44485 1.05750 1.00758 1.80349 1.21471 0.84653 0.90308 0.98838 1.23010 0.97442 0.99593 0.98677 1.22595 0.96979 0.97021 0.99748 1.21121 0.94472 0.87923 0.92109 0.94408 1.22253 0.97388 0.82483 0.99436 1.45923 1.59336 1.19082 1.11261 1.16860 0.77944 0.83969 0.83168 1.90805 1.58582 1.48970 1.44287 1.20883 1.10215 0.96382 0.90982 1.22444 1.00259 0.85565 1.01298 1.45174 1.44690 1.13211 1.10892 1.24168 1.04226 0.99590 0.82256 1.70210 1.15524 0.99398 1.30966 1.21288 0.94371 0.84118 0.92835 1.88166 1.44918 1.78274 1.17431 1.22992 1.02011 0.94239 0.83771 1.22825 0.99679 0.90011 0.92882 0.93612 0.95739 0.90778 0.92318 0.92411 0.92291 0.91890 0.91492 0.91533 0.76213 0.79165 0.85298 0.89505 0.86072 0.91356 0.88400 0.87732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.20 10.53 55.49 0.58 -26.61 16 2 C 0.00 -0.08 5.47 -17.44 -0.10 -0.17 16 3 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.23 -6.51 9.76 -15.06 -0.15 -6.66 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.59 -15.12 3.13 -162.57 -0.51 -15.63 16 10 C 0.17 4.23 5.43 -2.53 -0.01 4.21 16 11 C -0.15 -2.85 7.09 -24.58 -0.17 -3.02 16 12 C -0.13 -2.25 6.10 -24.90 -0.15 -2.40 16 13 C 0.15 3.19 3.22 -66.95 -0.22 2.98 16 14 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 15 C 0.11 2.28 5.07 -4.04 -0.02 2.26 16 16 N -0.71 -12.48 5.32 -61.42 -0.33 -12.81 16 17 C 0.60 10.85 7.81 -12.57 -0.10 10.75 16 18 O -0.55 -11.70 16.88 5.25 0.09 -11.61 16 19 C -0.06 -0.83 6.99 -82.89 -0.58 -1.41 16 20 C 0.04 0.51 11.38 -16.94 -0.19 0.32 16 21 N -0.46 -4.30 3.12 -113.31 -0.35 -4.65 16 22 C 0.16 1.73 7.79 -154.60 -1.20 0.52 16 23 N -0.44 -6.05 10.99 -6.95 -0.08 -6.13 16 24 C 0.15 1.07 7.29 36.21 0.26 1.33 16 25 O -0.37 -2.50 10.78 -35.23 -0.38 -2.88 16 26 C 0.05 0.18 6.81 37.39 0.25 0.43 16 27 C 0.07 0.32 7.28 -3.73 -0.03 0.30 16 28 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.02 0.65 8.08 -51.93 -0.42 0.23 16 30 H 0.07 2.01 6.85 -51.93 -0.36 1.66 16 31 H 0.06 1.09 8.14 -51.92 -0.42 0.66 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 1.13 7.81 -51.93 -0.41 0.72 16 35 H 0.07 1.55 7.92 -51.93 -0.41 1.14 16 36 H 0.07 1.52 8.08 -51.93 -0.42 1.10 16 37 H 0.40 6.38 8.04 -40.82 -0.33 6.05 16 38 H 0.19 1.89 8.06 -52.49 -0.42 1.47 16 39 H 0.13 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.12 0.14 8.14 -51.93 -0.42 -0.28 16 42 H 0.07 0.22 8.09 -51.93 -0.42 -0.20 16 43 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 LS Contribution 361.47 15.07 5.45 5.45 Total: -1.00 -35.56 361.47 -9.48 -45.04 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -6.53 Total: 2.87 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: -2.40 Total: 9.43 kcal Atomic # 7 Polarization: -65.15 SS G_CDS: -0.68 Total: -65.83 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.29 Total: -14.49 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.56 -9.48 -45.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027966182.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.960 kcal (2) G-P(sol) polarization free energy of solvation -35.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds