Wall clock time and date at job start Tue Mar 31 2020 12:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86808 * 120.00043 * 2 1 4 4 H 1.48502 * 109.47135 * 240.00402 * 3 2 1 5 5 H 1.48500 * 109.46846 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47311 * 120.00064 * 3 2 1 7 7 C 1.38808 * 120.00376 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00101 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99628 * 359.97438 * 7 2 1 10 10 C 1.47424 * 125.64935 * 13.56435 * 9 7 2 11 11 C 1.54912 * 104.83437 * 155.90552 * 10 9 7 12 12 C 1.55159 * 101.58141 * 37.00714 * 11 10 9 13 13 C 1.47031 * 125.64805 * 193.60384 * 9 7 2 14 14 H 1.09004 * 110.00624 * 300.51501 * 13 9 7 15 15 C 1.52996 * 109.87946 * 61.60594 * 13 9 7 16 16 N 1.46503 * 109.46708 * 182.37892 * 15 13 9 17 17 C 1.34777 * 120.00011 * 185.08684 * 16 15 13 18 18 O 1.21629 * 119.99884 * 0.02562 * 17 16 15 19 19 C 1.47322 * 120.00076 * 180.02562 * 17 16 15 20 20 C 1.36679 * 126.19502 * 180.02562 * 19 17 16 21 21 N 1.34505 * 106.73137 * 179.97438 * 20 19 17 22 22 C 1.36607 * 107.93523 * 0.08309 * 21 20 19 23 23 N 1.29484 * 108.90316 * 359.62439 * 22 21 20 24 24 C 1.51109 * 122.83735 * 179.86186 * 22 21 20 25 25 O 1.43432 * 107.76115 * 345.51073 * 24 22 21 26 26 C 1.43021 * 114.09030 * 49.73237 * 25 24 22 27 27 C 1.46645 * 128.71634 * 180.16131 * 21 20 19 28 28 H 0.97002 * 120.00528 * 359.97438 * 1 2 3 29 29 H 1.08999 * 110.36599 * 274.74158 * 10 9 7 30 30 H 1.09004 * 110.36664 * 37.06982 * 10 9 7 31 31 H 1.09008 * 111.00561 * 278.94166 * 11 10 9 32 32 H 1.08991 * 111.00876 * 155.08095 * 11 10 9 33 33 H 1.08995 * 110.72233 * 206.13475 * 12 11 10 34 34 H 1.09002 * 110.71853 * 82.86190 * 12 11 10 35 35 H 1.08996 * 109.47658 * 302.38100 * 15 13 9 36 36 H 1.08997 * 109.47163 * 62.38695 * 15 13 9 37 37 H 0.96998 * 120.00190 * 5.09359 * 16 15 13 38 38 H 1.07996 * 126.63692 * 359.97438 * 20 19 17 39 39 H 1.09000 * 109.80079 * 225.94476 * 24 22 21 40 40 H 1.09003 * 109.79769 * 105.07865 * 24 22 21 41 41 H 1.08994 * 109.43572 * 169.47538 * 26 25 24 42 42 H 1.09004 * 109.43082 * 49.61275 * 26 25 24 43 43 H 1.08998 * 109.73804 * 283.21374 * 27 21 20 44 44 H 1.08996 * 109.74272 * 43.91815 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1127 -2.5497 -0.2810 11 6 -0.2603 -4.0141 -0.7643 12 6 0.7666 -4.7456 0.1401 13 6 1.9029 -3.7108 0.2800 14 1 2.6952 -3.9312 -0.4355 15 6 2.4635 -3.7425 1.7032 16 7 3.0866 -5.0446 1.9535 17 6 3.5599 -5.3405 3.1803 18 8 3.4693 -4.5266 4.0796 19 6 4.1870 -6.6496 3.4319 20 6 4.7063 -7.0807 4.6204 21 7 5.1742 -8.3241 4.4102 22 6 4.9425 -8.6454 3.1029 23 7 4.3490 -7.6501 2.5251 24 6 5.3401 -9.9740 2.5027 25 8 6.2511 -10.6091 3.4104 26 6 5.7944 -10.6462 4.7652 27 6 5.8247 -9.2322 5.3604 28 1 -0.4851 0.8400 0.0004 29 1 -0.6964 -2.3888 0.6254 30 1 -0.4267 -1.8586 -1.0633 31 1 0.0095 -4.1075 -1.8163 32 1 -1.2700 -4.3841 -0.5872 33 1 1.1287 -5.6529 -0.3433 34 1 0.3305 -4.9732 1.1128 35 1 3.2084 -2.9552 1.8180 36 1 1.6544 -3.5840 2.4160 37 1 3.1586 -5.6938 1.2364 38 1 4.7354 -6.5296 5.5487 39 1 5.8283 -9.8136 1.5414 40 1 4.4565 -10.5981 2.3693 41 1 6.4431 -11.2993 5.3489 42 1 4.7744 -11.0298 4.7936 43 1 6.8575 -8.9214 5.5185 44 1 5.2869 -9.2202 6.3083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027966182.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:45 Heat of formation + Delta-G solvation = -14.032773 kcal Electronic energy + Delta-G solvation = -26663.734956 eV Core-core repulsion = 22809.928996 eV Total energy + Delta-G solvation = -3853.805960 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.56386 -40.62818 -39.36448 -39.00078 -35.79561 -35.26247 -34.38936 -31.94474 -31.40231 -30.89344 -30.24680 -27.50543 -26.67630 -25.72379 -24.66925 -23.66263 -22.02940 -21.37705 -21.03512 -20.62431 -19.26351 -18.61677 -17.65752 -17.61829 -17.33565 -16.87825 -16.64897 -16.27174 -16.09918 -15.84828 -15.68588 -15.60330 -14.95980 -14.75158 -14.67023 -14.37333 -13.96576 -13.72107 -13.65065 -13.42725 -13.00145 -12.87331 -12.83194 -12.65364 -12.24838 -12.05849 -11.88104 -11.73889 -11.60120 -11.48807 -11.42099 -11.19934 -11.14987 -10.76646 -10.68025 -10.14293 -9.57322 -8.87554 -7.87795 -5.25728 0.46322 1.21358 1.42144 1.44085 1.47837 1.53419 2.20599 2.42740 2.50514 2.67202 2.95377 3.30860 3.38112 3.62574 3.71281 3.87219 3.97228 3.98464 4.01123 4.14855 4.24587 4.32544 4.35676 4.44710 4.52669 4.56155 4.66562 4.71379 4.72603 4.87783 4.94259 4.97921 5.13131 5.20003 5.29931 5.35376 5.46126 5.55089 5.66290 5.71846 5.77571 5.96307 6.22717 6.45982 6.76948 7.08929 7.21889 7.75502 8.41777 9.22679 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023052 B = 0.002587 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.346545 B =10821.540636 C =11508.021049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.060 4.060 3 Si 0.974 3.026 4 H -0.273 1.273 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.075 0.925 9 N -0.610 5.610 10 C 0.174 3.826 11 C -0.132 4.132 12 C -0.112 4.112 13 C 0.149 3.851 14 H 0.048 0.952 15 C 0.131 3.869 16 N -0.696 5.696 17 C 0.594 3.406 18 O -0.590 6.590 19 C -0.096 4.096 20 C 0.058 3.942 21 N -0.450 5.450 22 C 0.166 3.834 23 N -0.467 5.467 24 C 0.154 3.846 25 O -0.383 6.383 26 C 0.044 3.956 27 C 0.060 3.940 28 H 0.248 0.752 29 H -0.008 1.008 30 H 0.041 0.959 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.035 0.965 36 H 0.039 0.961 37 H 0.415 0.585 38 H 0.206 0.794 39 H 0.136 0.864 40 H 0.108 0.892 41 H 0.152 0.848 42 H 0.077 0.923 43 H 0.108 0.892 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.422 -28.352 9.157 31.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.253 4.253 3 Si 0.802 3.198 4 H -0.199 1.199 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.371 4.371 8 H 0.093 0.907 9 N -0.334 5.334 10 C 0.049 3.951 11 C -0.170 4.170 12 C -0.150 4.150 13 C 0.042 3.958 14 H 0.066 0.934 15 C 0.004 3.996 16 N -0.347 5.347 17 C 0.382 3.618 18 O -0.471 6.471 19 C -0.224 4.224 20 C -0.084 4.084 21 N -0.132 5.132 22 C -0.100 4.100 23 N -0.188 5.188 24 C 0.076 3.924 25 O -0.300 6.300 26 C -0.033 4.033 27 C -0.061 4.061 28 H 0.058 0.942 29 H 0.010 0.990 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.252 0.748 38 H 0.223 0.777 39 H 0.154 0.846 40 H 0.126 0.874 41 H 0.170 0.830 42 H 0.095 0.905 43 H 0.127 0.873 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.282 -27.667 8.976 31.198 hybrid contribution 0.146 1.727 0.846 1.928 sum 11.428 -25.940 9.822 29.999 Atomic orbital electron populations 1.70132 1.06255 1.25507 1.57461 1.25686 0.96569 1.01000 1.02088 0.85229 0.77321 0.79085 0.78178 1.19920 1.21733 1.20868 1.19275 0.90741 0.83634 1.43479 0.90680 1.44747 1.06279 1.01770 1.80653 1.21295 0.83882 0.93497 0.96456 1.22878 0.99435 0.95360 0.99369 1.22564 0.95184 0.97269 0.99972 1.21293 0.95878 0.86831 0.91818 0.93410 1.21730 0.95676 0.83362 0.98807 1.45676 1.59165 1.17954 1.11893 1.17327 0.77139 0.84958 0.82392 1.90767 1.60278 1.50699 1.45367 1.20457 1.13184 0.95778 0.92948 1.22645 0.98606 0.86407 1.00749 1.45484 1.43612 1.12713 1.11404 1.24902 1.02420 0.99970 0.82664 1.70105 1.17174 0.99952 1.31577 1.21496 0.95388 0.82501 0.93011 1.88162 1.45242 1.77881 1.18714 1.23286 1.03396 0.93970 0.82642 1.23292 1.00231 0.89491 0.93044 0.94233 0.99026 0.94096 0.91024 0.89779 0.88227 0.91908 0.94615 0.94207 0.74835 0.77697 0.84592 0.87447 0.83016 0.90492 0.87338 0.85099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.36 10.53 21.65 0.23 -58.14 16 2 C -0.06 -3.52 5.47 84.86 0.46 -3.05 16 3 Si 0.97 47.63 29.55 68.60 2.03 49.65 16 4 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 5 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 6 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 7 C -0.24 -14.04 9.76 84.03 0.82 -13.22 16 8 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 9 N -0.61 -32.17 3.13 -668.24 -2.09 -34.26 16 10 C 0.17 8.79 5.43 86.86 0.47 9.26 16 11 C -0.13 -4.86 7.09 31.99 0.23 -4.63 16 12 C -0.11 -3.81 6.10 31.78 0.19 -3.62 16 13 C 0.15 6.26 3.22 45.34 0.15 6.41 16 14 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 15 C 0.13 5.63 5.07 86.38 0.44 6.07 16 16 N -0.70 -24.94 5.32 -466.46 -2.48 -27.43 16 17 C 0.59 22.15 7.81 86.63 0.68 22.83 16 18 O -0.59 -26.18 16.88 -4.12 -0.07 -26.25 16 19 C -0.10 -2.84 6.99 40.52 0.28 -2.56 16 20 C 0.06 1.29 11.38 83.92 0.95 2.25 16 21 N -0.45 -7.35 3.12 -512.41 -1.60 -8.95 16 22 C 0.17 3.18 7.79 138.04 1.08 4.25 16 23 N -0.47 -12.29 10.99 -175.89 -1.93 -14.22 16 24 C 0.15 1.71 7.29 71.37 0.52 2.23 16 25 O -0.38 -3.84 10.78 -148.98 -1.61 -5.45 16 26 C 0.04 0.16 6.81 72.13 0.49 0.65 16 27 C 0.06 0.34 7.28 86.50 0.63 0.97 16 28 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 29 H -0.01 -0.47 8.08 -2.39 -0.02 -0.49 16 30 H 0.04 2.31 6.85 -2.39 -0.02 2.29 16 31 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 32 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.06 2.16 7.81 -2.39 -0.02 2.14 16 35 H 0.04 1.74 7.92 -2.39 -0.02 1.72 16 36 H 0.04 1.91 8.08 -2.39 -0.02 1.89 16 37 H 0.41 12.85 8.04 -92.71 -0.75 12.11 16 38 H 0.21 3.81 8.06 -2.91 -0.02 3.79 16 39 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.15 -0.37 8.14 -2.39 -0.02 -0.39 16 42 H 0.08 0.18 8.09 -2.38 -0.02 0.16 16 43 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.13 0.11 8.14 -2.39 -0.02 0.10 16 Total: -1.00 -81.97 361.47 0.14 -81.83 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.27 Total: 15.38 kcal Atomic # 6 Polarization: 20.44 SS G_CDS: 7.39 Total: 27.84 kcal Atomic # 7 Polarization: -135.12 SS G_CDS: -7.88 Total: -143.00 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -1.68 Total: -31.70 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.65 kcal Total: -81.97 0.14 -81.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027966182.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.794 kcal (2) G-P(sol) polarization free energy of solvation -81.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds