Wall clock time and date at job start Tue Mar 31 2020 12:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 119.99779 * 2 1 4 4 H 1.48496 * 109.47442 * 264.81668 * 3 2 1 5 5 H 1.48501 * 109.47093 * 24.82184 * 3 2 1 6 6 H 1.48502 * 109.46807 * 144.81635 * 3 2 1 7 7 C 1.38813 * 120.00401 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99451 * 343.66886 * 7 2 1 9 9 N 1.36934 * 120.00131 * 163.66474 * 7 2 1 10 10 C 1.47430 * 125.65062 * 330.74905 * 9 7 2 11 11 C 1.54908 * 104.92747 * 204.09125 * 10 9 7 12 12 C 1.55274 * 101.53229 * 323.13082 * 11 10 9 13 13 C 1.47027 * 125.64845 * 150.77307 * 9 7 2 14 14 H 1.09003 * 109.87744 * 59.50231 * 13 9 7 15 15 C 1.52998 * 109.87826 * 298.34032 * 13 9 7 16 16 N 1.46501 * 109.47696 * 57.23782 * 15 13 9 17 17 C 1.34773 * 120.00357 * 185.96880 * 16 15 13 18 18 O 1.21629 * 119.99569 * 0.02562 * 17 16 15 19 19 C 1.47320 * 120.00250 * 179.97438 * 17 16 15 20 20 C 1.36679 * 126.19875 * 179.72059 * 19 17 16 21 21 N 1.34496 * 106.73147 * 179.81403 * 20 19 17 22 22 C 1.36612 * 107.93793 * 0.48960 * 21 20 19 23 23 N 1.29485 * 108.90267 * 359.65000 * 22 21 20 24 24 C 1.51103 * 122.84310 * 179.58605 * 22 21 20 25 25 O 1.43450 * 107.75280 * 345.47518 * 24 22 21 26 26 C 1.43011 * 114.08405 * 49.75422 * 25 24 22 27 27 C 1.46652 * 128.71655 * 180.24825 * 21 20 19 28 28 H 0.97001 * 120.00123 * 359.97438 * 1 2 3 29 29 H 1.08996 * 110.36476 * 322.98845 * 10 9 7 30 30 H 1.09007 * 110.36293 * 85.20076 * 10 9 7 31 31 H 1.09004 * 110.99971 * 81.12395 * 11 10 9 32 32 H 1.09004 * 111.00459 * 204.96788 * 11 10 9 33 33 H 1.09000 * 110.62142 * 277.01040 * 12 11 10 34 34 H 1.08995 * 110.75773 * 153.77592 * 12 11 10 35 35 H 1.09004 * 109.46729 * 177.23764 * 15 13 9 36 36 H 1.09003 * 109.47021 * 297.23154 * 15 13 9 37 37 H 0.97001 * 119.99072 * 5.97749 * 16 15 13 38 38 H 1.08007 * 126.63327 * 359.96961 * 20 19 17 39 39 H 1.09003 * 109.80080 * 105.04648 * 24 22 21 40 40 H 1.08997 * 109.80871 * 225.92379 * 24 22 21 41 41 H 1.09004 * 109.42950 * 169.47433 * 26 25 24 42 42 H 1.08997 * 109.43324 * 49.62283 * 26 25 24 43 43 H 1.09003 * 109.74042 * 283.58380 * 27 21 20 44 44 H 1.08995 * 109.74203 * 44.28894 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6072 1.9833 -1.3943 5 1 1.3971 2.6819 0.5878 6 1 3.4887 1.4743 0.8067 7 6 2.0103 -1.2021 -0.0005 8 1 1.5030 -2.1186 0.2621 9 7 3.3382 -1.2258 -0.3341 10 6 4.0106 -0.2880 -1.2517 11 6 5.2517 -1.0571 -1.7694 12 6 5.6786 -1.8464 -0.5022 13 6 4.3295 -2.1911 0.1632 14 1 4.0300 -3.2033 -0.1086 15 6 4.4538 -2.0726 1.6835 16 7 3.1415 -2.2855 2.2990 17 6 2.9829 -2.1095 3.6257 18 8 3.9291 -1.7733 4.3120 19 6 1.6631 -2.3231 4.2445 20 6 1.3617 -2.1866 5.5707 21 7 0.0534 -2.4694 5.7015 22 6 -0.4343 -2.7864 4.4654 23 7 0.5253 -2.6976 3.6005 24 6 -1.8760 -3.1706 4.2270 25 8 -2.4672 -3.4629 5.5010 26 6 -2.2438 -2.4569 6.4926 27 6 -0.7688 -2.4659 6.9159 28 1 -0.4850 0.8400 0.0004 29 1 3.3513 -0.0299 -2.0804 30 1 4.3172 0.6113 -0.7174 31 1 4.9813 -1.7354 -2.5787 32 1 6.0349 -0.3677 -2.0848 33 1 6.2835 -1.2208 0.1541 34 1 6.2168 -2.7540 -0.7755 35 1 5.1534 -2.8236 2.0505 36 1 4.8194 -1.0787 1.9418 37 1 2.3869 -2.5534 1.7515 38 1 2.0421 -1.9035 6.3604 39 1 -2.4056 -2.3429 3.7552 40 1 -1.9225 -4.0521 3.5876 41 1 -2.8714 -2.6579 7.3608 42 1 -2.4971 -1.4798 6.0814 43 1 -0.5602 -3.3594 7.5044 44 1 -0.5499 -1.5762 7.5062 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027966183.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:49 Heat of formation + Delta-G solvation = 18.313706 kcal Electronic energy + Delta-G solvation = -27848.446286 eV Core-core repulsion = 23996.042975 eV Total energy + Delta-G solvation = -3852.403311 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.28676 -38.99333 -38.27794 -37.55598 -34.25550 -33.66430 -32.57211 -30.64147 -29.92554 -29.90570 -29.15574 -26.30937 -24.91854 -23.98759 -23.67278 -22.18188 -20.91325 -19.73383 -19.47226 -19.21380 -17.88961 -16.95751 -16.67796 -16.21705 -15.82023 -15.59384 -15.20029 -15.07668 -14.94331 -14.66070 -14.21368 -13.81464 -13.67959 -13.32058 -13.10701 -12.95168 -12.73743 -12.53013 -12.44732 -11.90807 -11.59555 -11.53675 -11.20332 -11.07532 -10.86194 -10.60797 -10.45897 -10.41190 -10.03170 -9.92948 -9.86841 -9.57907 -9.46969 -9.32971 -8.63084 -8.35777 -8.01431 -6.90679 -5.91616 -3.30376 1.85911 2.50477 2.68641 3.37564 3.41925 3.50433 3.56267 3.89226 4.10441 4.21649 4.26331 4.57385 4.58215 4.67472 4.84043 5.01193 5.10811 5.15007 5.24519 5.35585 5.37314 5.43442 5.48093 5.51499 5.63107 5.78611 5.91987 6.01202 6.15210 6.17727 6.20424 6.31849 6.39054 6.45378 6.52826 6.70260 6.74927 6.82837 6.93261 7.07254 7.32014 7.83739 8.02620 8.33917 8.53266 8.84124 9.05137 9.71624 10.24304 11.23457 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016038 B = 0.004213 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.414952 B = 6643.712410 C = 7523.949994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.037 3.963 3 Si 0.884 3.116 4 H -0.286 1.286 5 H -0.306 1.306 6 H -0.274 1.274 7 C -0.241 4.241 8 H 0.091 0.909 9 N -0.602 5.602 10 C 0.111 3.889 11 C -0.131 4.131 12 C -0.123 4.123 13 C 0.144 3.856 14 H 0.050 0.950 15 C 0.115 3.885 16 N -0.683 5.683 17 C 0.597 3.403 18 O -0.573 6.573 19 C -0.049 4.049 20 C 0.032 3.968 21 N -0.459 5.459 22 C 0.162 3.838 23 N -0.418 5.418 24 C 0.152 3.848 25 O -0.373 6.373 26 C 0.047 3.953 27 C 0.071 3.929 28 H 0.261 0.739 29 H 0.056 0.944 30 H 0.023 0.977 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.422 0.578 38 H 0.187 0.813 39 H 0.090 0.910 40 H 0.129 0.871 41 H 0.118 0.882 42 H 0.068 0.932 43 H 0.094 0.906 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.957 -5.903 10.859 12.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.163 4.163 3 Si 0.715 3.285 4 H -0.213 1.213 5 H -0.234 1.234 6 H -0.200 1.200 7 C -0.368 4.368 8 H 0.109 0.891 9 N -0.328 5.328 10 C -0.014 4.014 11 C -0.169 4.169 12 C -0.162 4.162 13 C 0.036 3.964 14 H 0.067 0.933 15 C -0.012 4.012 16 N -0.335 5.335 17 C 0.382 3.618 18 O -0.454 6.454 19 C -0.179 4.179 20 C -0.106 4.106 21 N -0.144 5.144 22 C -0.101 4.101 23 N -0.138 5.138 24 C 0.074 3.926 25 O -0.290 6.290 26 C -0.030 4.030 27 C -0.052 4.052 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.040 0.960 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.264 0.736 38 H 0.204 0.796 39 H 0.108 0.892 40 H 0.147 0.853 41 H 0.136 0.864 42 H 0.086 0.914 43 H 0.112 0.888 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.800 -5.899 10.616 12.171 hybrid contribution 0.393 1.590 0.759 1.805 sum -0.407 -4.310 11.374 12.170 Atomic orbital electron populations 1.69782 1.05507 1.26308 1.52664 1.25179 0.95088 0.97301 0.98723 0.86923 0.79330 0.84619 0.77646 1.21333 1.23393 1.20025 1.18403 0.81250 0.94146 1.43011 0.89132 1.44848 1.05192 1.33802 1.48962 1.21955 0.93057 0.93031 0.93312 1.22733 0.97945 0.99070 0.97166 1.22544 0.96442 0.99975 0.97202 1.21353 0.89651 0.94916 0.90430 0.93276 1.21912 0.84332 1.00437 0.94483 1.45994 1.13720 1.66648 1.07154 1.16861 0.85142 0.77200 0.82567 1.90705 1.40794 1.50616 1.63333 1.20798 0.94157 1.12157 0.90748 1.22298 0.84670 1.04497 0.99124 1.45180 1.08545 1.51423 1.09212 1.24172 0.98713 1.06701 0.80563 1.70361 0.97737 1.15320 1.30335 1.21296 0.82508 1.03655 0.85111 1.88127 1.74893 1.44982 1.21042 1.22953 0.93296 0.93277 0.93517 1.22750 0.91669 1.04647 0.86112 0.92926 0.92594 0.95991 0.91288 0.91816 0.91443 0.91351 0.93019 0.92129 0.73613 0.79588 0.89199 0.85304 0.86388 0.91378 0.88766 0.88135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.18 13.97 55.49 0.78 -26.41 16 2 C 0.04 1.08 5.47 -17.43 -0.10 0.98 16 3 Si 0.88 23.35 24.38 -169.99 -4.14 19.20 16 4 H -0.29 -7.27 6.87 56.52 0.39 -6.88 16 5 H -0.31 -8.26 7.11 56.52 0.40 -7.86 16 6 H -0.27 -7.36 6.66 56.52 0.38 -6.99 16 7 C -0.24 -6.54 8.44 -15.06 -0.13 -6.66 16 8 H 0.09 2.62 6.79 -52.49 -0.36 2.26 16 9 N -0.60 -14.18 2.81 -162.57 -0.46 -14.64 16 10 C 0.11 2.41 4.79 -2.53 -0.01 2.40 16 11 C -0.13 -2.16 7.10 -24.52 -0.17 -2.34 16 12 C -0.12 -1.96 6.48 -24.83 -0.16 -2.12 16 13 C 0.14 2.81 3.41 -66.95 -0.23 2.58 16 14 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 15 C 0.11 2.32 5.26 -4.04 -0.02 2.30 16 16 N -0.68 -15.11 4.82 -61.41 -0.30 -15.41 16 17 C 0.60 13.30 7.81 -12.57 -0.10 13.20 16 18 O -0.57 -13.48 16.87 5.25 0.09 -13.39 16 19 C -0.05 -0.99 6.99 -82.89 -0.58 -1.57 16 20 C 0.03 0.53 11.38 -16.95 -0.19 0.33 16 21 N -0.46 -6.44 3.12 -113.31 -0.35 -6.79 16 22 C 0.16 2.66 7.79 -154.60 -1.20 1.46 16 23 N -0.42 -8.50 10.99 -6.95 -0.08 -8.58 16 24 C 0.15 1.94 7.29 36.20 0.26 2.21 16 25 O -0.37 -4.12 10.78 -35.23 -0.38 -4.50 16 26 C 0.05 0.37 6.81 37.39 0.25 0.63 16 27 C 0.07 0.61 7.28 -3.73 -0.03 0.58 16 28 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.06 1.27 7.48 -51.93 -0.39 0.89 16 30 H 0.02 0.51 5.23 -51.92 -0.27 0.24 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.04 7.80 -51.93 -0.41 0.63 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.06 1.34 8.06 -51.93 -0.42 0.92 16 37 H 0.42 9.84 5.32 -40.82 -0.22 9.62 16 38 H 0.19 2.51 8.06 -52.48 -0.42 2.09 16 39 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.13 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 43 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 351.21 15.07 5.29 5.29 Total: -1.00 -35.65 351.21 -8.25 -43.90 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -6.30 Total: 7.34 kcal Atomic # 6 Polarization: 16.38 SS G_CDS: -2.40 Total: 13.98 kcal Atomic # 7 Polarization: -71.41 SS G_CDS: -0.41 Total: -71.82 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.29 Total: -17.89 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -4.14 Total: 19.20 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.65 -8.25 -43.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027966183.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.214 kcal (2) G-P(sol) polarization free energy of solvation -35.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds