Wall clock time and date at job start Tue Mar 31 2020 12:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 119.99779 * 2 1 4 4 H 1.48496 * 109.47442 * 264.81668 * 3 2 1 5 5 H 1.48501 * 109.47093 * 24.82184 * 3 2 1 6 6 H 1.48502 * 109.46807 * 144.81635 * 3 2 1 7 7 C 1.38813 * 120.00401 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99451 * 343.66886 * 7 2 1 9 9 N 1.36934 * 120.00131 * 163.66474 * 7 2 1 10 10 C 1.47430 * 125.65062 * 330.74905 * 9 7 2 11 11 C 1.54908 * 104.92747 * 204.09125 * 10 9 7 12 12 C 1.55274 * 101.53229 * 323.13082 * 11 10 9 13 13 C 1.47027 * 125.64845 * 150.77307 * 9 7 2 14 14 H 1.09003 * 109.87744 * 59.50231 * 13 9 7 15 15 C 1.52998 * 109.87826 * 298.34032 * 13 9 7 16 16 N 1.46501 * 109.47696 * 57.23782 * 15 13 9 17 17 C 1.34773 * 120.00357 * 185.96880 * 16 15 13 18 18 O 1.21629 * 119.99569 * 0.02562 * 17 16 15 19 19 C 1.47320 * 120.00250 * 179.97438 * 17 16 15 20 20 C 1.36679 * 126.19875 * 179.72059 * 19 17 16 21 21 N 1.34496 * 106.73147 * 179.81403 * 20 19 17 22 22 C 1.36612 * 107.93793 * 0.48960 * 21 20 19 23 23 N 1.29485 * 108.90267 * 359.65000 * 22 21 20 24 24 C 1.51103 * 122.84310 * 179.58605 * 22 21 20 25 25 O 1.43450 * 107.75280 * 345.47518 * 24 22 21 26 26 C 1.43011 * 114.08405 * 49.75422 * 25 24 22 27 27 C 1.46652 * 128.71655 * 180.24825 * 21 20 19 28 28 H 0.97001 * 120.00123 * 359.97438 * 1 2 3 29 29 H 1.08996 * 110.36476 * 322.98845 * 10 9 7 30 30 H 1.09007 * 110.36293 * 85.20076 * 10 9 7 31 31 H 1.09004 * 110.99971 * 81.12395 * 11 10 9 32 32 H 1.09004 * 111.00459 * 204.96788 * 11 10 9 33 33 H 1.09000 * 110.62142 * 277.01040 * 12 11 10 34 34 H 1.08995 * 110.75773 * 153.77592 * 12 11 10 35 35 H 1.09004 * 109.46729 * 177.23764 * 15 13 9 36 36 H 1.09003 * 109.47021 * 297.23154 * 15 13 9 37 37 H 0.97001 * 119.99072 * 5.97749 * 16 15 13 38 38 H 1.08007 * 126.63327 * 359.96961 * 20 19 17 39 39 H 1.09003 * 109.80080 * 105.04648 * 24 22 21 40 40 H 1.08997 * 109.80871 * 225.92379 * 24 22 21 41 41 H 1.09004 * 109.42950 * 169.47433 * 26 25 24 42 42 H 1.08997 * 109.43324 * 49.62283 * 26 25 24 43 43 H 1.09003 * 109.74042 * 283.58380 * 27 21 20 44 44 H 1.08995 * 109.74203 * 44.28894 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6072 1.9833 -1.3943 5 1 1.3971 2.6819 0.5878 6 1 3.4887 1.4743 0.8067 7 6 2.0103 -1.2021 -0.0005 8 1 1.5030 -2.1186 0.2621 9 7 3.3382 -1.2258 -0.3341 10 6 4.0106 -0.2880 -1.2517 11 6 5.2517 -1.0571 -1.7694 12 6 5.6786 -1.8464 -0.5022 13 6 4.3295 -2.1911 0.1632 14 1 4.0300 -3.2033 -0.1086 15 6 4.4538 -2.0726 1.6835 16 7 3.1415 -2.2855 2.2990 17 6 2.9829 -2.1095 3.6257 18 8 3.9291 -1.7733 4.3120 19 6 1.6631 -2.3231 4.2445 20 6 1.3617 -2.1866 5.5707 21 7 0.0534 -2.4694 5.7015 22 6 -0.4343 -2.7864 4.4654 23 7 0.5253 -2.6976 3.6005 24 6 -1.8760 -3.1706 4.2270 25 8 -2.4672 -3.4629 5.5010 26 6 -2.2438 -2.4569 6.4926 27 6 -0.7688 -2.4659 6.9159 28 1 -0.4850 0.8400 0.0004 29 1 3.3513 -0.0299 -2.0804 30 1 4.3172 0.6113 -0.7174 31 1 4.9813 -1.7354 -2.5787 32 1 6.0349 -0.3677 -2.0848 33 1 6.2835 -1.2208 0.1541 34 1 6.2168 -2.7540 -0.7755 35 1 5.1534 -2.8236 2.0505 36 1 4.8194 -1.0787 1.9418 37 1 2.3869 -2.5534 1.7515 38 1 2.0421 -1.9035 6.3604 39 1 -2.4056 -2.3429 3.7552 40 1 -1.9225 -4.0521 3.5876 41 1 -2.8714 -2.6579 7.3608 42 1 -2.4971 -1.4798 6.0814 43 1 -0.5602 -3.3594 7.5044 44 1 -0.5499 -1.5762 7.5062 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027966183.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:48 Heat of formation + Delta-G solvation = -8.788315 kcal Electronic energy + Delta-G solvation = -27849.621518 eV Core-core repulsion = 23996.042975 eV Total energy + Delta-G solvation = -3853.578543 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.50474 -40.57706 -39.46537 -39.00952 -35.50920 -35.15787 -34.61056 -31.89580 -31.77257 -30.99750 -30.56937 -27.55606 -26.52633 -25.63837 -24.66454 -23.68480 -22.39510 -21.34548 -20.84202 -20.54393 -19.28435 -18.66136 -17.62867 -17.58237 -17.27304 -16.97055 -16.85849 -16.71999 -16.07931 -15.80537 -15.65049 -15.20153 -14.99553 -14.91987 -14.75845 -14.48992 -14.20564 -14.10057 -13.68927 -13.39673 -13.00587 -12.88932 -12.76599 -12.67872 -12.30775 -12.26805 -12.05194 -11.77821 -11.63845 -11.49706 -11.30591 -11.13494 -10.98531 -10.76291 -10.73587 -9.95078 -9.48337 -8.89292 -8.13447 -5.46019 0.52423 1.23349 1.28989 1.32830 1.40471 1.47659 2.37114 2.42230 2.58249 2.63437 3.03040 3.19013 3.30692 3.39532 3.65347 3.87229 3.93858 3.99921 4.02583 4.13638 4.17949 4.28871 4.31262 4.37515 4.46012 4.52714 4.64235 4.66116 4.69829 4.75138 4.81459 4.91804 5.02149 5.04372 5.16232 5.28953 5.38016 5.49151 5.61595 5.70858 5.81538 5.98952 6.16604 6.60868 6.81877 6.89430 7.32962 7.58169 8.18491 9.05603 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016038 B = 0.004213 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.414952 B = 6643.712410 C = 7523.949994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.016 4.016 3 Si 0.933 3.067 4 H -0.271 1.271 5 H -0.318 1.318 6 H -0.283 1.283 7 C -0.210 4.210 8 H 0.065 0.935 9 N -0.620 5.620 10 C 0.100 3.900 11 C -0.116 4.116 12 C -0.112 4.112 13 C 0.139 3.861 14 H 0.056 0.944 15 C 0.115 3.885 16 N -0.693 5.693 17 C 0.590 3.410 18 O -0.595 6.595 19 C -0.102 4.102 20 C 0.056 3.944 21 N -0.451 5.451 22 C 0.158 3.842 23 N -0.468 5.468 24 C 0.157 3.843 25 O -0.377 6.377 26 C 0.040 3.960 27 C 0.062 3.938 28 H 0.257 0.743 29 H 0.039 0.961 30 H 0.010 0.990 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.076 0.924 36 H 0.038 0.962 37 H 0.414 0.586 38 H 0.214 0.786 39 H 0.090 0.910 40 H 0.134 0.866 41 H 0.160 0.840 42 H 0.066 0.934 43 H 0.117 0.883 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.199 -6.479 12.046 13.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.212 4.212 3 Si 0.764 3.236 4 H -0.197 1.197 5 H -0.247 1.247 6 H -0.210 1.210 7 C -0.339 4.339 8 H 0.083 0.917 9 N -0.346 5.346 10 C -0.025 4.025 11 C -0.154 4.154 12 C -0.151 4.151 13 C 0.033 3.967 14 H 0.073 0.927 15 C -0.010 4.010 16 N -0.343 5.343 17 C 0.377 3.623 18 O -0.478 6.478 19 C -0.231 4.231 20 C -0.085 4.085 21 N -0.133 5.133 22 C -0.107 4.107 23 N -0.188 5.188 24 C 0.079 3.921 25 O -0.294 6.294 26 C -0.036 4.036 27 C -0.058 4.058 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.027 0.973 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.126 0.874 35 H 0.094 0.906 36 H 0.057 0.943 37 H 0.254 0.746 38 H 0.231 0.769 39 H 0.108 0.892 40 H 0.152 0.848 41 H 0.177 0.823 42 H 0.085 0.915 43 H 0.135 0.865 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.386 -6.486 11.806 13.476 hybrid contribution -0.003 1.666 0.504 1.741 sum 0.383 -4.820 12.311 13.226 Atomic orbital electron populations 1.69887 1.06626 1.26350 1.55937 1.25633 0.95578 0.99612 1.00410 0.86124 0.77535 0.81884 0.78024 1.19685 1.24686 1.20984 1.18279 0.82931 0.92822 1.39878 0.91711 1.45031 1.04794 1.34737 1.49999 1.22076 0.95016 0.93069 0.92322 1.22699 0.95953 0.99164 0.97565 1.22581 0.94269 1.01795 0.96413 1.21594 0.90951 0.94083 0.90104 0.92659 1.21970 0.84089 0.99892 0.95061 1.46105 1.14032 1.66802 1.07379 1.17244 0.86010 0.76552 0.82483 1.90656 1.41725 1.51852 1.63606 1.20767 0.93694 1.16046 0.92573 1.22639 0.85811 1.01933 0.98140 1.45515 1.08087 1.49386 1.10305 1.24746 0.99378 1.05547 0.81065 1.70237 0.98796 1.17234 1.32566 1.21310 0.80604 1.03812 0.86401 1.88130 1.74433 1.46140 1.20689 1.23316 0.93610 0.92653 0.94023 1.23285 0.90977 1.07242 0.84299 0.93423 0.94290 0.97265 0.90014 0.88659 0.90693 0.87436 0.90567 0.94329 0.74606 0.76905 0.89184 0.84840 0.82274 0.91548 0.86538 0.85136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.33 13.97 21.65 0.30 -59.03 16 2 C -0.02 -0.98 5.47 84.86 0.46 -0.52 16 3 Si 0.93 49.70 24.38 68.60 1.67 51.37 16 4 H -0.27 -13.52 6.87 99.48 0.68 -12.83 16 5 H -0.32 -17.35 7.11 99.48 0.71 -16.64 16 6 H -0.28 -15.29 6.66 99.48 0.66 -14.63 16 7 C -0.21 -11.78 8.44 84.03 0.71 -11.07 16 8 H 0.07 3.95 6.79 -2.91 -0.02 3.93 16 9 N -0.62 -29.23 2.81 -668.24 -1.88 -31.11 16 10 C 0.10 4.21 4.79 86.85 0.42 4.62 16 11 C -0.12 -3.42 7.10 32.03 0.23 -3.19 16 12 C -0.11 -3.16 6.48 31.82 0.21 -2.96 16 13 C 0.14 5.26 3.41 45.34 0.15 5.42 16 14 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 15 C 0.12 4.67 5.26 86.38 0.45 5.12 16 16 N -0.69 -31.72 4.82 -466.46 -2.25 -33.96 16 17 C 0.59 27.19 7.81 86.63 0.68 27.87 16 18 O -0.59 -28.52 16.87 -4.12 -0.07 -28.59 16 19 C -0.10 -4.28 6.99 40.52 0.28 -3.99 16 20 C 0.06 1.78 11.38 83.92 0.95 2.74 16 21 N -0.45 -12.01 3.12 -512.40 -1.60 -13.61 16 22 C 0.16 5.22 7.79 138.04 1.08 6.30 16 23 N -0.47 -19.89 10.99 -175.89 -1.93 -21.82 16 24 C 0.16 4.00 7.29 71.36 0.52 4.52 16 25 O -0.38 -7.62 10.78 -148.98 -1.61 -9.22 16 26 C 0.04 0.52 6.81 72.13 0.49 1.01 16 27 C 0.06 0.85 7.28 86.50 0.63 1.48 16 28 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 29 H 0.04 1.76 7.48 -2.39 -0.02 1.74 16 30 H 0.01 0.44 5.23 -2.38 -0.01 0.42 16 31 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 32 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 33 H 0.07 2.04 7.80 -2.39 -0.02 2.02 16 34 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.08 2.68 8.14 -2.38 -0.02 2.66 16 36 H 0.04 1.72 8.06 -2.39 -0.02 1.70 16 37 H 0.41 20.33 5.32 -92.71 -0.49 19.83 16 38 H 0.21 5.37 8.06 -2.91 -0.02 5.35 16 39 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.13 3.19 8.14 -2.39 -0.02 3.17 16 41 H 0.16 0.77 8.14 -2.38 -0.02 0.75 16 42 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 43 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -82.52 351.21 0.37 -82.15 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: 0.46 Total: 26.48 kcal Atomic # 6 Polarization: 30.08 SS G_CDS: 7.26 Total: 37.34 kcal Atomic # 7 Polarization: -152.17 SS G_CDS: -7.35 Total: -159.52 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -1.68 Total: -37.81 kcal Atomic # 14 Polarization: 49.70 SS G_CDS: 1.67 Total: 51.37 kcal Total: -82.52 0.37 -82.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027966183.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.358 kcal (2) G-P(sol) polarization free energy of solvation -82.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds