Wall clock time and date at job start Tue Mar 31 2020 12:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86792 * 120.00083 * 2 1 4 4 H 1.48501 * 109.47101 * 239.99684 * 3 2 1 5 5 H 1.48499 * 109.47458 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47252 * 120.00010 * 3 2 1 7 7 C 1.38813 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00220 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99936 * 359.97438 * 7 2 1 10 10 C 1.47420 * 125.64771 * 346.27197 * 9 7 2 11 11 C 1.54911 * 104.92483 * 204.09143 * 10 9 7 12 12 C 1.55271 * 101.52965 * 323.12655 * 11 10 9 13 13 C 1.47023 * 125.64364 * 166.29408 * 9 7 2 14 14 H 1.08997 * 109.88483 * 59.50817 * 13 9 7 15 15 C 1.52998 * 109.88399 * 298.33764 * 13 9 7 16 16 N 1.46504 * 109.46991 * 175.50576 * 15 13 9 17 17 C 1.34772 * 119.99676 * 184.66328 * 16 15 13 18 18 O 1.21669 * 120.00468 * 359.97438 * 17 16 15 19 19 C 1.46924 * 119.99689 * 179.97438 * 17 16 15 20 20 C 1.41699 * 126.56526 * 0.02729 * 19 17 16 21 21 N 1.30555 * 108.19727 * 179.97438 * 20 19 17 22 22 N 1.39356 * 109.06331 * 359.95933 * 21 20 19 23 23 C 1.35157 * 108.45784 * 359.81174 * 22 21 20 24 24 O 1.35466 * 123.86952 * 180.08172 * 23 22 21 25 25 C 1.43541 * 115.04701 * 344.67852 * 24 23 22 26 26 C 1.53250 * 109.17773 * 46.93133 * 25 24 23 27 27 C 1.46796 * 127.97839 * 180.15888 * 22 21 20 28 28 H 0.97000 * 119.99954 * 359.97438 * 1 2 3 29 29 H 1.08998 * 110.36856 * 322.98395 * 10 9 7 30 30 H 1.09001 * 110.36607 * 85.20222 * 10 9 7 31 31 H 1.09002 * 111.00372 * 81.12557 * 11 10 9 32 32 H 1.09005 * 111.00326 * 204.97200 * 11 10 9 33 33 H 1.08999 * 110.62880 * 277.00832 * 12 11 10 34 34 H 1.09000 * 110.75587 * 153.77639 * 12 11 10 35 35 H 1.09000 * 109.47113 * 295.50467 * 15 13 9 36 36 H 1.08998 * 109.47033 * 55.50592 * 15 13 9 37 37 H 0.96996 * 120.00160 * 4.66169 * 16 15 13 38 38 H 1.08007 * 125.89856 * 359.95275 * 20 19 17 39 39 H 1.09000 * 109.51565 * 166.84079 * 25 24 23 40 40 H 1.08997 * 109.51836 * 287.01695 * 25 24 23 41 41 H 1.08999 * 109.50716 * 55.80356 * 26 25 24 42 42 H 1.09001 * 109.50601 * 175.93887 * 26 25 24 43 43 H 1.08995 * 109.75948 * 282.56032 * 27 22 21 44 44 H 1.08997 * 109.75555 * 43.31348 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1119 -2.5503 0.2843 11 6 -0.2604 -4.0153 0.7655 12 6 0.7664 -4.7456 -0.1418 13 6 1.9022 -3.7105 -0.2841 14 1 2.6954 -3.9299 0.4304 15 6 2.4583 -3.7409 -1.7092 16 7 3.1251 -5.0237 -1.9458 17 6 3.7748 -5.2413 -3.1064 18 8 3.8073 -4.3727 -3.9577 19 6 4.4440 -6.5276 -3.3435 20 6 4.4938 -7.6299 -2.4544 21 7 5.1787 -8.5836 -3.0253 22 7 5.5952 -8.1542 -4.2839 23 6 5.1403 -6.8965 -4.4791 24 8 5.3656 -6.1786 -5.6056 25 6 6.4036 -6.6902 -6.4549 26 6 6.2082 -8.1994 -6.6353 27 6 6.3852 -8.8945 -5.2752 28 1 -0.4850 0.8401 0.0004 29 1 -0.4235 -1.8601 1.0682 30 1 -0.6985 -2.3866 -0.6197 31 1 0.0111 -4.1106 1.8169 32 1 -1.2711 -4.3837 0.5897 33 1 0.3274 -4.9724 -1.1133 34 1 1.1302 -5.6534 0.3396 35 1 1.6415 -3.6192 -2.4206 36 1 3.1751 -2.9297 -1.8368 37 1 3.0990 -5.7163 -1.2673 38 1 4.0433 -7.6733 -1.4738 39 1 6.3550 -6.1979 -7.4262 40 1 7.3747 -6.5006 -5.9977 41 1 5.2076 -8.3933 -7.0217 42 1 6.9502 -8.5812 -7.3366 43 1 7.4355 -8.8943 -4.9840 44 1 6.0216 -9.9197 -5.3449 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027998477.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:37 Heat of formation + Delta-G solvation = 34.470214 kcal Electronic energy + Delta-G solvation = -26958.515639 eV Core-core repulsion = 23106.812927 eV Total energy + Delta-G solvation = -3851.702712 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.09099 -39.16707 -38.62221 -37.42202 -34.98785 -34.01824 -32.40373 -31.28256 -30.20456 -29.41611 -28.35450 -26.73757 -25.00506 -24.27120 -23.22641 -22.37796 -20.41220 -20.12865 -19.90671 -19.46881 -18.37871 -17.13531 -16.78558 -16.45292 -15.84985 -15.55695 -15.26469 -15.16603 -14.77387 -14.63495 -14.33449 -14.15284 -13.74644 -13.57009 -13.19317 -12.90858 -12.73712 -12.20858 -12.00634 -11.92045 -11.79589 -11.66381 -11.60969 -11.24524 -11.01198 -10.87771 -10.71604 -10.12365 -10.06686 -9.82400 -9.76397 -9.64243 -9.50038 -9.41589 -8.66923 -8.53616 -8.32299 -6.77082 -5.69693 -3.05792 1.43510 1.82736 2.08239 2.71145 3.45672 3.50425 3.51779 3.57772 3.76613 3.81503 3.91819 4.27638 4.32532 4.55726 4.62968 4.68636 4.80374 4.97283 5.00564 5.17423 5.27785 5.41241 5.45153 5.49593 5.61548 5.70974 5.80505 5.89574 6.14975 6.20103 6.28439 6.33035 6.54701 6.65425 6.71630 6.86763 6.95642 6.97702 7.19094 7.31993 7.59115 7.67491 7.85944 8.04587 8.33012 8.77789 9.24648 9.85268 10.52476 11.42110 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019253 B = 0.002900 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.000801 B = 9651.308539 C =10693.570968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.003 4.003 3 Si 0.910 3.090 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.231 4.231 8 H 0.076 0.924 9 N -0.589 5.589 10 C 0.172 3.828 11 C -0.148 4.148 12 C -0.127 4.127 13 C 0.152 3.848 14 H 0.038 0.962 15 C 0.113 3.887 16 N -0.721 5.721 17 C 0.589 3.411 18 O -0.543 6.543 19 C -0.300 4.300 20 C 0.104 3.896 21 N -0.288 5.288 22 N -0.401 5.401 23 C 0.334 3.666 24 O -0.261 6.261 25 C 0.042 3.958 26 C -0.177 4.177 27 C 0.129 3.871 28 H 0.253 0.747 29 H 0.073 0.927 30 H 0.025 0.975 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.392 0.608 38 H 0.198 0.802 39 H 0.123 0.877 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.112 0.888 43 H 0.092 0.908 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.476 -21.134 -9.726 25.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.200 4.200 3 Si 0.741 3.259 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.360 4.360 8 H 0.093 0.907 9 N -0.314 5.314 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.165 4.165 13 C 0.043 3.957 14 H 0.056 0.944 15 C -0.012 4.012 16 N -0.372 5.372 17 C 0.376 3.624 18 O -0.421 6.421 19 C -0.315 4.315 20 C -0.085 4.085 21 N -0.109 5.109 22 N -0.195 5.195 23 C 0.162 3.838 24 O -0.165 6.165 25 C -0.033 4.033 26 C -0.216 4.216 27 C 0.008 3.992 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.225 0.775 38 H 0.214 0.786 39 H 0.141 0.859 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.130 0.870 43 H 0.111 0.889 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 11.852 -21.208 -10.441 26.443 hybrid contribution 0.335 1.127 -0.035 1.176 sum 12.186 -20.081 -10.477 25.720 Atomic orbital electron populations 1.69930 1.04991 1.25312 1.56138 1.24890 0.95674 0.97813 1.01577 0.86225 0.78573 0.83120 0.78028 1.20947 1.21628 1.21120 1.18957 0.90405 0.82221 1.44374 0.90657 1.44480 1.05838 1.00831 1.80218 1.21462 0.84720 0.90279 0.98854 1.23022 0.97443 0.99621 0.98632 1.22645 0.97072 0.96998 0.99803 1.21135 0.94390 0.87907 0.92235 0.94422 1.22176 0.96611 0.83437 0.98986 1.45838 1.55060 1.18490 1.17780 1.16941 0.78123 0.85141 0.82223 1.90819 1.61411 1.45357 1.44541 1.19296 1.18073 0.99590 0.94510 1.24041 0.95747 0.89290 0.99435 1.77043 1.19709 1.22765 0.91404 1.48976 1.44870 1.10758 1.14943 1.19758 0.93524 0.82766 0.87777 1.86789 1.53641 1.47440 1.28606 1.23258 0.90351 0.93901 0.95828 1.22732 1.05878 0.96097 0.96871 1.22027 0.95628 0.96928 0.84613 0.93630 0.90858 0.95726 0.92352 0.92385 0.91755 0.92343 0.92115 0.91200 0.77457 0.78561 0.85863 0.90621 0.89015 0.86964 0.88943 0.87823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.09 10.54 55.49 0.58 -26.50 16 2 C 0.00 -0.07 5.47 -17.43 -0.10 -0.17 16 3 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.23 -6.46 9.73 -15.06 -0.15 -6.60 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.59 -14.88 3.13 -162.57 -0.51 -15.39 16 10 C 0.17 4.15 5.42 -2.53 -0.01 4.13 16 11 C -0.15 -2.75 7.10 -24.52 -0.17 -2.92 16 12 C -0.13 -2.13 6.07 -24.83 -0.15 -2.29 16 13 C 0.15 3.05 3.22 -66.95 -0.22 2.84 16 14 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 15 C 0.11 2.28 5.09 -4.04 -0.02 2.26 16 16 N -0.72 -11.72 5.40 -61.54 -0.33 -12.05 16 17 C 0.59 10.62 7.80 -12.75 -0.10 10.52 16 18 O -0.54 -12.22 16.53 2.87 0.05 -12.17 16 19 C -0.30 -4.43 6.14 -105.07 -0.64 -5.07 16 20 C 0.10 1.20 11.51 -16.77 -0.19 1.01 16 21 N -0.29 -3.45 12.54 30.97 0.39 -3.06 16 22 N -0.40 -4.42 4.04 -60.34 -0.24 -4.66 16 23 C 0.33 4.59 7.50 -16.09 -0.12 4.47 16 24 O -0.26 -3.47 10.18 -20.44 -0.21 -3.68 16 25 C 0.04 0.29 7.01 37.29 0.26 0.55 16 26 C -0.18 -0.78 6.18 -26.21 -0.16 -0.94 16 27 C 0.13 0.77 7.41 -3.49 -0.03 0.75 16 28 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.07 1.97 6.86 -51.93 -0.36 1.61 16 30 H 0.02 0.65 8.08 -51.93 -0.42 0.23 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.06 1.07 7.78 -51.93 -0.40 0.67 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 1.35 8.03 -51.93 -0.42 0.93 16 36 H 0.07 1.62 7.86 -51.93 -0.41 1.22 16 37 H 0.39 4.95 7.20 -40.82 -0.29 4.65 16 38 H 0.20 1.54 7.51 -52.48 -0.39 1.14 16 39 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.11 0.12 8.14 -51.93 -0.42 -0.31 16 43 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 359.75 15.07 5.42 5.42 Total: -1.00 -36.94 359.75 -8.14 -45.08 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -6.47 Total: 0.97 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: -1.80 Total: 8.54 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: -0.11 Total: -61.67 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.16 Total: -15.85 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.94 -8.14 -45.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027998477.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.555 kcal (2) G-P(sol) polarization free energy of solvation -36.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds