Wall clock time and date at job start Tue Mar 31 2020 12:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86792 * 120.00083 * 2 1 4 4 H 1.48501 * 109.47101 * 239.99684 * 3 2 1 5 5 H 1.48499 * 109.47458 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47252 * 120.00010 * 3 2 1 7 7 C 1.38813 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00220 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99936 * 359.97438 * 7 2 1 10 10 C 1.47420 * 125.64771 * 346.27197 * 9 7 2 11 11 C 1.54911 * 104.92483 * 204.09143 * 10 9 7 12 12 C 1.55271 * 101.52965 * 323.12655 * 11 10 9 13 13 C 1.47023 * 125.64364 * 166.29408 * 9 7 2 14 14 H 1.08997 * 109.88483 * 59.50817 * 13 9 7 15 15 C 1.52998 * 109.88399 * 298.33764 * 13 9 7 16 16 N 1.46504 * 109.46991 * 175.50576 * 15 13 9 17 17 C 1.34772 * 119.99676 * 184.66328 * 16 15 13 18 18 O 1.21669 * 120.00468 * 359.97438 * 17 16 15 19 19 C 1.46924 * 119.99689 * 179.97438 * 17 16 15 20 20 C 1.41699 * 126.56526 * 0.02729 * 19 17 16 21 21 N 1.30555 * 108.19727 * 179.97438 * 20 19 17 22 22 N 1.39356 * 109.06331 * 359.95933 * 21 20 19 23 23 C 1.35157 * 108.45784 * 359.81174 * 22 21 20 24 24 O 1.35466 * 123.86952 * 180.08172 * 23 22 21 25 25 C 1.43541 * 115.04701 * 344.67852 * 24 23 22 26 26 C 1.53250 * 109.17773 * 46.93133 * 25 24 23 27 27 C 1.46796 * 127.97839 * 180.15888 * 22 21 20 28 28 H 0.97000 * 119.99954 * 359.97438 * 1 2 3 29 29 H 1.08998 * 110.36856 * 322.98395 * 10 9 7 30 30 H 1.09001 * 110.36607 * 85.20222 * 10 9 7 31 31 H 1.09002 * 111.00372 * 81.12557 * 11 10 9 32 32 H 1.09005 * 111.00326 * 204.97200 * 11 10 9 33 33 H 1.08999 * 110.62880 * 277.00832 * 12 11 10 34 34 H 1.09000 * 110.75587 * 153.77639 * 12 11 10 35 35 H 1.09000 * 109.47113 * 295.50467 * 15 13 9 36 36 H 1.08998 * 109.47033 * 55.50592 * 15 13 9 37 37 H 0.96996 * 120.00160 * 4.66169 * 16 15 13 38 38 H 1.08007 * 125.89856 * 359.95275 * 20 19 17 39 39 H 1.09000 * 109.51565 * 166.84079 * 25 24 23 40 40 H 1.08997 * 109.51836 * 287.01695 * 25 24 23 41 41 H 1.08999 * 109.50716 * 55.80356 * 26 25 24 42 42 H 1.09001 * 109.50601 * 175.93887 * 26 25 24 43 43 H 1.08995 * 109.75948 * 282.56032 * 27 22 21 44 44 H 1.08997 * 109.75555 * 43.31348 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1119 -2.5503 0.2843 11 6 -0.2604 -4.0153 0.7655 12 6 0.7664 -4.7456 -0.1418 13 6 1.9022 -3.7105 -0.2841 14 1 2.6954 -3.9299 0.4304 15 6 2.4583 -3.7409 -1.7092 16 7 3.1251 -5.0237 -1.9458 17 6 3.7748 -5.2413 -3.1064 18 8 3.8073 -4.3727 -3.9577 19 6 4.4440 -6.5276 -3.3435 20 6 4.4938 -7.6299 -2.4544 21 7 5.1787 -8.5836 -3.0253 22 7 5.5952 -8.1542 -4.2839 23 6 5.1403 -6.8965 -4.4791 24 8 5.3656 -6.1786 -5.6056 25 6 6.4036 -6.6902 -6.4549 26 6 6.2082 -8.1994 -6.6353 27 6 6.3852 -8.8945 -5.2752 28 1 -0.4850 0.8401 0.0004 29 1 -0.4235 -1.8601 1.0682 30 1 -0.6985 -2.3866 -0.6197 31 1 0.0111 -4.1106 1.8169 32 1 -1.2711 -4.3837 0.5897 33 1 0.3274 -4.9724 -1.1133 34 1 1.1302 -5.6534 0.3396 35 1 1.6415 -3.6192 -2.4206 36 1 3.1751 -2.9297 -1.8368 37 1 3.0990 -5.7163 -1.2673 38 1 4.0433 -7.6733 -1.4738 39 1 6.3550 -6.1979 -7.4262 40 1 7.3747 -6.5006 -5.9977 41 1 5.2076 -8.3933 -7.0217 42 1 6.9502 -8.5812 -7.3366 43 1 7.4355 -8.8943 -4.9840 44 1 6.0216 -9.9197 -5.3449 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027998477.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:36 Heat of formation + Delta-G solvation = 5.981057 kcal Electronic energy + Delta-G solvation = -26959.751021 eV Core-core repulsion = 23106.812927 eV Total energy + Delta-G solvation = -3852.938095 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.95276 -40.48539 -39.62735 -39.08593 -35.64727 -35.63617 -34.35983 -32.04589 -31.52244 -31.07832 -29.85708 -27.37343 -26.71680 -25.86934 -24.28483 -23.41347 -21.99839 -21.30809 -21.13952 -20.74768 -19.48009 -18.66534 -17.94911 -17.52823 -17.25300 -16.68335 -16.43510 -16.17887 -15.94267 -15.83333 -15.71959 -15.53368 -15.20252 -14.62993 -14.48507 -14.26506 -13.92800 -13.60475 -13.44614 -13.33968 -12.96452 -12.84559 -12.70892 -12.63992 -12.59001 -12.18120 -12.04240 -11.88122 -11.77486 -11.62887 -11.42136 -11.34011 -10.91096 -10.65591 -10.30862 -10.06140 -9.48952 -8.83165 -7.85959 -5.23032 0.44991 1.07589 1.10944 1.44417 1.48559 1.53878 1.99476 2.31152 2.47376 2.53432 3.14544 3.33282 3.48689 3.67262 3.79274 3.88849 3.96491 3.98713 4.05935 4.08170 4.24603 4.29942 4.34682 4.49220 4.51070 4.56222 4.58319 4.64732 4.79615 4.87417 5.03380 5.05935 5.08165 5.20691 5.28332 5.40056 5.45702 5.50769 5.64316 5.71245 5.82055 6.15211 6.26156 6.42965 6.75577 7.11942 7.42310 7.79430 8.44777 9.24494 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019253 B = 0.002900 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.000801 B = 9651.308539 C =10693.570968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.061 4.061 3 Si 0.971 3.029 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.273 1.273 7 C -0.239 4.239 8 H 0.075 0.925 9 N -0.611 5.611 10 C 0.172 3.828 11 C -0.132 4.132 12 C -0.114 4.114 13 C 0.149 3.851 14 H 0.053 0.947 15 C 0.133 3.867 16 N -0.701 5.701 17 C 0.588 3.412 18 O -0.600 6.600 19 C -0.335 4.335 20 C 0.116 3.884 21 N -0.297 5.297 22 N -0.393 5.393 23 C 0.329 3.671 24 O -0.297 6.297 25 C 0.027 3.973 26 C -0.164 4.164 27 C 0.114 3.886 28 H 0.247 0.753 29 H 0.037 0.963 30 H -0.011 1.011 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.110 0.890 35 H 0.033 0.967 36 H 0.030 0.970 37 H 0.415 0.585 38 H 0.233 0.767 39 H 0.141 0.859 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.155 0.845 43 H 0.114 0.886 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.183 -24.643 -9.550 29.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.254 4.254 3 Si 0.800 3.200 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.198 1.198 7 C -0.368 4.368 8 H 0.093 0.907 9 N -0.336 5.336 10 C 0.047 3.953 11 C -0.171 4.171 12 C -0.151 4.151 13 C 0.041 3.959 14 H 0.071 0.929 15 C 0.007 3.993 16 N -0.354 5.354 17 C 0.377 3.623 18 O -0.482 6.482 19 C -0.350 4.350 20 C -0.073 4.073 21 N -0.118 5.118 22 N -0.188 5.188 23 C 0.154 3.846 24 O -0.201 6.201 25 C -0.047 4.047 26 C -0.202 4.202 27 C -0.004 4.004 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.008 0.992 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.128 0.872 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.252 0.748 38 H 0.249 0.751 39 H 0.159 0.841 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.173 0.827 43 H 0.132 0.868 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 13.599 -24.809 -10.248 30.091 hybrid contribution -0.086 2.139 -0.209 2.151 sum 13.514 -22.670 -10.457 28.388 Atomic orbital electron populations 1.70137 1.06212 1.25389 1.57672 1.25663 0.96541 1.00945 1.02288 0.85263 0.77342 0.79292 0.78141 1.21082 1.21808 1.19835 1.19267 0.90709 0.83746 1.43126 0.90742 1.44758 1.06384 1.01960 1.80487 1.21292 0.83918 0.93749 0.96320 1.22887 0.99580 0.95142 0.99478 1.22652 0.94928 0.97448 1.00111 1.21354 0.96087 0.86688 0.91741 0.92883 1.21646 0.94811 0.84255 0.98602 1.45479 1.54223 1.17498 1.18178 1.17438 0.77487 0.85814 0.81540 1.90781 1.63562 1.47512 1.46385 1.19141 1.20037 0.99093 0.96712 1.24505 0.95007 0.87613 1.00138 1.77003 1.19862 1.22956 0.91980 1.49363 1.44259 1.09988 1.15149 1.19898 0.93173 0.83795 0.87722 1.86749 1.55469 1.48844 1.29064 1.23718 0.89269 0.96088 0.95659 1.22735 1.06804 0.93860 0.96846 1.22569 0.96220 0.97442 0.84150 0.94334 0.94422 0.99245 0.91010 0.89880 0.91614 0.87175 0.94901 0.95146 0.74815 0.75132 0.84143 0.89667 0.89826 0.82722 0.86837 0.85988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.34 10.54 21.65 0.23 -58.11 16 2 C -0.06 -3.57 5.47 84.86 0.46 -3.11 16 3 Si 0.97 47.72 29.55 68.60 2.03 49.75 16 4 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 5 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 6 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.24 -13.77 9.73 84.03 0.82 -12.95 16 8 H 0.07 4.18 7.83 -2.91 -0.02 4.16 16 9 N -0.61 -31.55 3.13 -668.26 -2.09 -33.64 16 10 C 0.17 8.54 5.42 86.86 0.47 9.01 16 11 C -0.13 -4.61 7.10 32.03 0.23 -4.38 16 12 C -0.11 -3.47 6.07 31.82 0.19 -3.27 16 13 C 0.15 5.86 3.22 45.34 0.15 6.01 16 14 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 15 C 0.13 5.53 5.09 86.38 0.44 5.97 16 16 N -0.70 -22.44 5.40 -466.85 -2.52 -24.96 16 17 C 0.59 21.56 7.80 86.52 0.67 22.23 16 18 O -0.60 -28.41 16.53 -2.00 -0.03 -28.44 16 19 C -0.33 -9.69 6.14 -20.15 -0.12 -9.81 16 20 C 0.12 2.41 11.51 85.74 0.99 3.40 16 21 N -0.30 -6.35 12.54 -55.94 -0.70 -7.05 16 22 N -0.39 -7.83 4.04 -456.27 -1.84 -9.67 16 23 C 0.33 8.83 7.50 84.18 0.63 9.46 16 24 O -0.30 -7.95 10.18 -85.39 -0.87 -8.82 16 25 C 0.03 0.33 7.01 72.07 0.50 0.84 16 26 C -0.16 -0.96 6.18 30.93 0.19 -0.77 16 27 C 0.11 1.01 7.41 86.58 0.64 1.65 16 28 H 0.25 14.88 8.31 -92.71 -0.77 14.10 16 29 H 0.04 2.10 6.86 -2.39 -0.02 2.08 16 30 H -0.01 -0.58 8.08 -2.39 -0.02 -0.60 16 31 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 33 H 0.07 2.02 7.78 -2.39 -0.02 2.00 16 34 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.03 1.53 8.03 -2.39 -0.02 1.51 16 36 H 0.03 1.49 7.86 -2.39 -0.02 1.47 16 37 H 0.41 9.36 7.20 -92.71 -0.67 8.69 16 38 H 0.23 2.70 7.51 -2.91 -0.02 2.68 16 39 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.15 -0.39 8.14 -2.39 -0.02 -0.41 16 43 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -87.69 359.75 0.82 -86.87 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 0.35 Total: 9.81 kcal Atomic # 6 Polarization: 18.01 SS G_CDS: 6.27 Total: 24.27 kcal Atomic # 7 Polarization: -126.52 SS G_CDS: -6.93 Total: -133.44 kcal Atomic # 8 Polarization: -36.36 SS G_CDS: -0.90 Total: -37.26 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 2.03 Total: 49.75 kcal Total: -87.69 0.82 -86.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027998477.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.853 kcal (2) G-P(sol) polarization free energy of solvation -87.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds