Wall clock time and date at job start Tue Mar 31 2020 12:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99529 * 2 1 4 4 H 1.48498 * 109.47033 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47420 * 300.00046 * 3 2 1 6 6 H 1.48499 * 109.47485 * 60.00396 * 3 2 1 7 7 C 1.38806 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00119 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00177 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64738 * 14.72094 * 9 7 2 11 11 C 1.54912 * 104.82892 * 155.82718 * 10 9 7 12 12 C 1.55149 * 101.58365 * 37.01250 * 11 10 9 13 13 C 1.47023 * 125.64964 * 194.67351 * 9 7 2 14 14 H 1.09007 * 109.88094 * 300.51709 * 13 9 7 15 15 C 1.53000 * 109.88837 * 61.68376 * 13 9 7 16 16 N 1.46501 * 109.47502 * 183.28304 * 15 13 9 17 17 C 1.34771 * 120.00079 * 184.89266 * 16 15 13 18 18 O 1.21577 * 119.99638 * 359.97438 * 17 16 15 19 19 C 1.47710 * 120.00096 * 179.97438 * 17 16 15 20 20 C 1.41300 * 125.95446 * 179.97438 * 19 17 16 21 21 C 1.34856 * 107.70602 * 179.97438 * 20 19 17 22 22 N 1.36393 * 107.92473 * 0.09376 * 21 20 19 23 23 N 1.32121 * 125.95135 * 359.69161 * 19 17 16 24 24 C 1.46720 * 123.62315 * 179.77787 * 22 21 20 25 25 C 1.53534 * 107.95821 * 343.04982 * 24 22 21 26 26 C 1.53229 * 109.29216 * 47.29718 * 25 24 22 27 27 O 1.36028 * 128.63209 * 180.20915 * 21 20 19 28 28 H 0.96994 * 120.00146 * 359.97438 * 1 2 3 29 29 H 1.09001 * 110.36657 * 36.98737 * 10 9 7 30 30 H 1.09000 * 110.45683 * 274.71170 * 10 9 7 31 31 H 1.08999 * 111.00509 * 278.93438 * 11 10 9 32 32 H 1.09005 * 110.99916 * 155.08751 * 11 10 9 33 33 H 1.08998 * 110.72706 * 82.85883 * 12 11 10 34 34 H 1.09004 * 110.72247 * 206.13387 * 12 11 10 35 35 H 1.09001 * 109.46785 * 303.28319 * 15 13 9 36 36 H 1.09001 * 109.46842 * 63.27456 * 15 13 9 37 37 H 0.97003 * 119.99411 * 4.88616 * 16 15 13 38 38 H 1.07998 * 126.13973 * 359.92140 * 20 19 17 39 39 H 1.09002 * 109.76874 * 102.66874 * 24 22 21 40 40 H 1.09000 * 109.76443 * 223.39180 * 24 22 21 41 41 H 1.08999 * 109.50067 * 167.23945 * 25 24 22 42 42 H 1.08995 * 109.50064 * 287.31745 * 25 24 22 43 43 H 1.08998 * 109.50529 * 55.34036 * 26 25 24 44 44 H 1.09004 * 109.50206 * 175.41930 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1075 -2.5528 -0.3044 11 6 -0.2462 -4.0214 -0.7774 12 6 0.7649 -4.7445 0.1511 13 6 1.8983 -3.7080 0.3016 14 1 2.7018 -3.9329 -0.3999 15 6 2.4342 -3.7273 1.7345 16 7 3.0722 -5.0191 2.0001 17 6 3.5316 -5.3026 3.2349 18 8 3.4170 -4.4861 4.1284 19 6 4.1744 -6.6052 3.5028 20 6 4.6987 -7.0321 4.7435 21 6 5.1952 -8.2744 4.5734 22 7 4.9987 -8.6303 3.2715 23 7 4.3545 -7.5764 2.6252 24 6 5.4156 -9.9202 2.7101 25 6 6.4338 -10.5483 3.6723 26 6 5.8970 -10.4615 5.1048 27 8 5.7935 -9.0826 5.4894 28 1 -0.4850 0.8400 0.0004 29 1 -0.4081 -1.8687 -1.0980 30 1 -0.7083 -2.3836 0.5891 31 1 0.0417 -4.1238 -1.8236 32 1 -1.2590 -4.3902 -0.6146 33 1 0.3121 -4.9638 1.1180 34 1 1.1356 -5.6560 -0.3180 35 1 3.1651 -2.9285 1.8598 36 1 1.6103 -3.5786 2.4325 37 1 3.1638 -5.6703 1.2870 38 1 4.7020 -6.4650 5.6626 39 1 4.5503 -10.5755 2.6097 40 1 5.8761 -9.7659 1.7343 41 1 6.5902 -11.5934 3.4050 42 1 7.3790 -10.0099 3.6041 43 1 4.9130 -10.9278 5.1536 44 1 6.5784 -10.9782 5.7807 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028017837.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:35 Heat of formation + Delta-G solvation = 36.149397 kcal Electronic energy + Delta-G solvation = -26633.198903 eV Core-core repulsion = 22781.569005 eV Total energy + Delta-G solvation = -3851.629897 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.03584 -39.52190 -38.49437 -37.48315 -35.08046 -34.22178 -32.44877 -31.37010 -29.74749 -29.55903 -28.65787 -26.86104 -25.04553 -24.34721 -23.60232 -22.31944 -20.39638 -20.23902 -19.87484 -19.42982 -18.45216 -17.07278 -16.71797 -16.37723 -15.97122 -15.85631 -15.29278 -15.26201 -14.93007 -14.66785 -14.46770 -14.20041 -13.82462 -13.66551 -13.15555 -13.11580 -12.77057 -12.16924 -12.02560 -11.85074 -11.82626 -11.71954 -11.64737 -11.27008 -11.02479 -10.90090 -10.76867 -10.19236 -10.08858 -9.97596 -9.81816 -9.74863 -9.65058 -9.39489 -8.67153 -8.62349 -8.52931 -6.80031 -5.73308 -3.09771 1.25272 1.83788 2.04275 2.60533 3.41373 3.45941 3.49900 3.51662 3.55723 3.67018 3.86790 4.23354 4.27446 4.51759 4.59140 4.65843 4.81091 4.90984 5.15544 5.17851 5.28813 5.38413 5.46163 5.57167 5.67298 5.69316 5.74303 5.86479 6.11170 6.16720 6.25104 6.31050 6.50723 6.59255 6.66289 6.74380 6.85396 6.93394 7.09448 7.18954 7.55593 7.65405 7.83153 7.85569 8.29046 8.46288 9.21200 9.81673 10.49189 11.38846 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022984 B = 0.002578 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.955303 B =10856.436466 C =11541.396175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.002 4.002 3 Si 0.910 3.090 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.232 4.232 8 H 0.077 0.923 9 N -0.589 5.589 10 C 0.172 3.828 11 C -0.148 4.148 12 C -0.126 4.126 13 C 0.152 3.848 14 H 0.039 0.961 15 C 0.108 3.892 16 N -0.705 5.705 17 C 0.592 3.408 18 O -0.526 6.526 19 C 0.060 3.940 20 C -0.226 4.226 21 C 0.260 3.740 22 N -0.396 5.396 23 N -0.245 5.245 24 C 0.128 3.872 25 C -0.175 4.175 26 C 0.049 3.951 27 O -0.286 6.286 28 H 0.253 0.747 29 H 0.072 0.928 30 H 0.026 0.974 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.402 0.598 38 H 0.166 0.834 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.111 0.889 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.435 -25.662 5.565 28.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.199 4.199 3 Si 0.741 3.259 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.361 4.361 8 H 0.095 0.905 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.164 4.164 13 C 0.043 3.957 14 H 0.056 0.944 15 C -0.017 4.017 16 N -0.356 5.356 17 C 0.374 3.626 18 O -0.399 6.399 19 C -0.108 4.108 20 C -0.256 4.256 21 C 0.094 3.906 22 N -0.194 5.194 23 N -0.075 5.075 24 C 0.008 3.992 25 C -0.214 4.214 26 C -0.027 4.027 27 O -0.193 6.193 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.237 0.763 38 H 0.183 0.817 39 H 0.109 0.891 40 H 0.122 0.878 41 H 0.129 0.871 42 H 0.108 0.892 43 H 0.091 0.909 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.242 -25.218 5.218 27.714 hybrid contribution 0.699 0.453 0.439 0.941 sum 10.940 -24.765 5.657 27.658 Atomic orbital electron populations 1.69948 1.05019 1.25175 1.56015 1.24918 0.95684 0.97874 1.01446 0.86071 0.78962 0.83688 0.77214 1.20347 1.21775 1.21598 1.19043 0.90453 0.82150 1.44418 0.90549 1.44497 1.06406 1.01000 1.79379 1.21454 0.84794 0.90161 0.98850 1.23006 0.97547 0.99620 0.98538 1.22610 0.97076 0.96993 0.99766 1.21134 0.94603 0.88077 0.91853 0.94374 1.22336 0.97375 0.82515 0.99467 1.46020 1.59099 1.19999 1.10501 1.16898 0.78582 0.83757 0.83392 1.90827 1.56855 1.47536 1.44730 1.22171 1.01247 0.95008 0.92332 1.20241 1.10468 0.94511 1.00366 1.19421 0.97490 0.92575 0.81121 1.49286 1.48529 1.14855 1.06719 1.77585 1.15974 0.94854 1.19129 1.21959 0.98681 0.79983 0.98622 1.22647 0.99728 1.04045 0.94960 1.23117 1.02829 0.80268 0.96447 1.86664 1.75028 1.19406 1.38210 0.93674 0.90990 0.95553 0.92333 0.92370 0.91780 0.92344 0.91111 0.91228 0.76350 0.81651 0.89103 0.87751 0.87084 0.89159 0.90864 0.86208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.88 10.58 55.49 0.59 -26.29 16 2 C 0.00 -0.06 5.47 -17.43 -0.10 -0.15 16 3 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.23 -6.42 9.74 -15.06 -0.15 -6.57 16 8 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 9 N -0.59 -14.79 3.13 -162.57 -0.51 -15.30 16 10 C 0.17 4.15 5.41 -2.53 -0.01 4.14 16 11 C -0.15 -2.77 7.08 -24.59 -0.17 -2.95 16 12 C -0.13 -2.19 6.14 -24.90 -0.15 -2.34 16 13 C 0.15 3.08 3.21 -66.95 -0.21 2.86 16 14 H 0.04 0.76 8.14 -51.92 -0.42 0.34 16 15 C 0.11 2.16 5.08 -4.04 -0.02 2.14 16 16 N -0.71 -11.83 5.34 -61.29 -0.33 -12.15 16 17 C 0.59 10.52 7.82 -12.39 -0.10 10.42 16 18 O -0.53 -11.12 16.90 5.30 0.09 -11.03 16 19 C 0.06 0.92 7.10 -82.71 -0.59 0.34 16 20 C -0.23 -3.19 10.58 -39.62 -0.42 -3.61 16 21 C 0.26 3.08 7.57 -16.72 -0.13 2.96 16 22 N -0.40 -4.32 4.08 -60.93 -0.25 -4.57 16 23 N -0.25 -3.35 12.32 33.43 0.41 -2.93 16 24 C 0.13 0.74 7.41 -3.65 -0.03 0.71 16 25 C -0.18 -0.59 6.16 -26.34 -0.16 -0.75 16 26 C 0.05 0.23 7.00 37.28 0.26 0.49 16 27 O -0.29 -2.75 10.65 -19.83 -0.21 -2.96 16 28 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.07 1.92 6.93 -51.93 -0.36 1.56 16 30 H 0.03 0.69 8.06 -51.93 -0.42 0.27 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 1.11 7.79 -51.93 -0.40 0.70 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.58 7.90 -51.93 -0.41 1.17 16 36 H 0.07 1.53 8.06 -51.93 -0.42 1.11 16 37 H 0.40 5.85 8.05 -40.82 -0.33 5.52 16 38 H 0.17 2.24 8.06 -52.49 -0.42 1.82 16 39 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.11 0.03 8.14 -51.93 -0.42 -0.39 16 42 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.12 0.26 8.14 -51.93 -0.42 -0.17 16 LS Contribution 362.07 15.07 5.46 5.46 Total: -1.00 -34.32 362.07 -8.29 -42.61 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -6.54 Total: 2.16 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: -1.98 Total: 7.69 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: -0.09 Total: -61.25 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.12 Total: -13.99 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.32 -8.29 -42.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028017837.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.757 kcal (2) G-P(sol) polarization free energy of solvation -34.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds