Wall clock time and date at job start Tue Mar 31 2020 12:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99529 * 2 1 4 4 H 1.48498 * 109.47033 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47420 * 300.00046 * 3 2 1 6 6 H 1.48499 * 109.47485 * 60.00396 * 3 2 1 7 7 C 1.38806 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00119 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00177 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64738 * 14.72094 * 9 7 2 11 11 C 1.54912 * 104.82892 * 155.82718 * 10 9 7 12 12 C 1.55149 * 101.58365 * 37.01250 * 11 10 9 13 13 C 1.47023 * 125.64964 * 194.67351 * 9 7 2 14 14 H 1.09007 * 109.88094 * 300.51709 * 13 9 7 15 15 C 1.53000 * 109.88837 * 61.68376 * 13 9 7 16 16 N 1.46501 * 109.47502 * 183.28304 * 15 13 9 17 17 C 1.34771 * 120.00079 * 184.89266 * 16 15 13 18 18 O 1.21577 * 119.99638 * 359.97438 * 17 16 15 19 19 C 1.47710 * 120.00096 * 179.97438 * 17 16 15 20 20 C 1.41300 * 125.95446 * 179.97438 * 19 17 16 21 21 C 1.34856 * 107.70602 * 179.97438 * 20 19 17 22 22 N 1.36393 * 107.92473 * 0.09376 * 21 20 19 23 23 N 1.32121 * 125.95135 * 359.69161 * 19 17 16 24 24 C 1.46720 * 123.62315 * 179.77787 * 22 21 20 25 25 C 1.53534 * 107.95821 * 343.04982 * 24 22 21 26 26 C 1.53229 * 109.29216 * 47.29718 * 25 24 22 27 27 O 1.36028 * 128.63209 * 180.20915 * 21 20 19 28 28 H 0.96994 * 120.00146 * 359.97438 * 1 2 3 29 29 H 1.09001 * 110.36657 * 36.98737 * 10 9 7 30 30 H 1.09000 * 110.45683 * 274.71170 * 10 9 7 31 31 H 1.08999 * 111.00509 * 278.93438 * 11 10 9 32 32 H 1.09005 * 110.99916 * 155.08751 * 11 10 9 33 33 H 1.08998 * 110.72706 * 82.85883 * 12 11 10 34 34 H 1.09004 * 110.72247 * 206.13387 * 12 11 10 35 35 H 1.09001 * 109.46785 * 303.28319 * 15 13 9 36 36 H 1.09001 * 109.46842 * 63.27456 * 15 13 9 37 37 H 0.97003 * 119.99411 * 4.88616 * 16 15 13 38 38 H 1.07998 * 126.13973 * 359.92140 * 20 19 17 39 39 H 1.09002 * 109.76874 * 102.66874 * 24 22 21 40 40 H 1.09000 * 109.76443 * 223.39180 * 24 22 21 41 41 H 1.08999 * 109.50067 * 167.23945 * 25 24 22 42 42 H 1.08995 * 109.50064 * 287.31745 * 25 24 22 43 43 H 1.08998 * 109.50529 * 55.34036 * 26 25 24 44 44 H 1.09004 * 109.50206 * 175.41930 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1075 -2.5528 -0.3044 11 6 -0.2462 -4.0214 -0.7774 12 6 0.7649 -4.7445 0.1511 13 6 1.8983 -3.7080 0.3016 14 1 2.7018 -3.9329 -0.3999 15 6 2.4342 -3.7273 1.7345 16 7 3.0722 -5.0191 2.0001 17 6 3.5316 -5.3026 3.2349 18 8 3.4170 -4.4861 4.1284 19 6 4.1744 -6.6052 3.5028 20 6 4.6987 -7.0321 4.7435 21 6 5.1952 -8.2744 4.5734 22 7 4.9987 -8.6303 3.2715 23 7 4.3545 -7.5764 2.6252 24 6 5.4156 -9.9202 2.7101 25 6 6.4338 -10.5483 3.6723 26 6 5.8970 -10.4615 5.1048 27 8 5.7935 -9.0826 5.4894 28 1 -0.4850 0.8400 0.0004 29 1 -0.4081 -1.8687 -1.0980 30 1 -0.7083 -2.3836 0.5891 31 1 0.0417 -4.1238 -1.8236 32 1 -1.2590 -4.3902 -0.6146 33 1 0.3121 -4.9638 1.1180 34 1 1.1356 -5.6560 -0.3180 35 1 3.1651 -2.9285 1.8598 36 1 1.6103 -3.5786 2.4325 37 1 3.1638 -5.6703 1.2870 38 1 4.7020 -6.4650 5.6626 39 1 4.5503 -10.5755 2.6097 40 1 5.8761 -9.7659 1.7343 41 1 6.5902 -11.5934 3.4050 42 1 7.3790 -10.0099 3.6041 43 1 4.9130 -10.9278 5.1536 44 1 6.5784 -10.9782 5.7807 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028017837.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:34 Heat of formation + Delta-G solvation = 10.314365 kcal Electronic energy + Delta-G solvation = -26634.319194 eV Core-core repulsion = 22781.569005 eV Total energy + Delta-G solvation = -3852.750189 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.91576 -40.81779 -39.53356 -39.07193 -35.83769 -35.66045 -34.40959 -32.25675 -31.38114 -30.62596 -30.27905 -27.60913 -26.70885 -25.90757 -24.60476 -23.44165 -22.02141 -21.42326 -21.03816 -20.73963 -19.51107 -18.64794 -17.80667 -17.43938 -17.25970 -16.72987 -16.70169 -16.40905 -16.10846 -15.84835 -15.75322 -15.61039 -15.13004 -14.77155 -14.62621 -14.27589 -13.96283 -13.66069 -13.46240 -13.34628 -12.99735 -12.85187 -12.68652 -12.62458 -12.43423 -12.11543 -11.97417 -11.89183 -11.87774 -11.73244 -11.49184 -11.40840 -11.35748 -10.68013 -10.36944 -10.06539 -9.60315 -8.85422 -7.87739 -5.25396 0.16417 1.00710 1.05469 1.44743 1.47175 1.56536 1.78428 2.22517 2.27121 2.50769 3.01452 3.32037 3.51776 3.58051 3.74778 3.91919 3.97578 3.98807 4.01603 4.19607 4.27227 4.31781 4.43600 4.46057 4.54178 4.55895 4.59715 4.69842 4.73297 4.93877 4.95404 4.99864 5.06622 5.14578 5.18781 5.23955 5.31712 5.48053 5.55533 5.67419 5.79331 6.12476 6.17679 6.23808 6.53427 7.07252 7.10346 7.76513 8.42709 9.23505 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022984 B = 0.002578 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.955303 B =10856.436466 C =11541.396175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.060 4.060 3 Si 0.972 3.028 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.295 1.295 7 C -0.239 4.239 8 H 0.077 0.923 9 N -0.610 5.610 10 C 0.173 3.827 11 C -0.132 4.132 12 C -0.114 4.114 13 C 0.149 3.851 14 H 0.052 0.948 15 C 0.127 3.873 16 N -0.690 5.690 17 C 0.594 3.406 18 O -0.569 6.569 19 C 0.040 3.960 20 C -0.256 4.256 21 C 0.274 3.726 22 N -0.383 5.383 23 N -0.248 5.248 24 C 0.111 3.889 25 C -0.165 4.165 26 C 0.034 3.966 27 O -0.299 6.299 28 H 0.248 0.752 29 H 0.037 0.963 30 H -0.007 1.007 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.041 0.959 36 H 0.044 0.956 37 H 0.417 0.583 38 H 0.158 0.842 39 H 0.113 0.887 40 H 0.117 0.883 41 H 0.153 0.847 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.105 -29.763 4.822 32.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.254 4.254 3 Si 0.801 3.199 4 H -0.192 1.192 5 H -0.215 1.215 6 H -0.222 1.222 7 C -0.368 4.368 8 H 0.095 0.905 9 N -0.334 5.334 10 C 0.049 3.951 11 C -0.171 4.171 12 C -0.152 4.152 13 C 0.041 3.959 14 H 0.070 0.930 15 C 0.001 3.999 16 N -0.342 5.342 17 C 0.378 3.622 18 O -0.446 6.446 19 C -0.126 4.126 20 C -0.286 4.286 21 C 0.106 3.894 22 N -0.182 5.182 23 N -0.080 5.080 24 C -0.007 4.007 25 C -0.203 4.203 26 C -0.040 4.040 27 O -0.206 6.206 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.011 0.989 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.120 0.880 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.254 0.746 38 H 0.175 0.825 39 H 0.131 0.869 40 H 0.135 0.865 41 H 0.171 0.829 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 11.945 -29.399 4.449 32.044 hybrid contribution 0.282 1.498 0.705 1.680 sum 12.227 -27.901 5.154 30.896 Atomic orbital electron populations 1.70145 1.06277 1.25340 1.57574 1.25691 0.96537 1.01003 1.02146 0.85106 0.78328 0.79803 0.76707 1.19152 1.21490 1.22213 1.19346 0.90779 0.83530 1.43125 0.90500 1.44754 1.06879 1.02052 1.79717 1.21276 0.84048 0.93427 0.96399 1.22871 0.99564 0.95314 0.99310 1.22597 0.95278 0.97341 0.99949 1.21323 0.96100 0.86856 0.91594 0.93026 1.21840 0.95809 0.83300 0.98921 1.45717 1.58584 1.18991 1.10907 1.17221 0.77811 0.84398 0.82795 1.90795 1.58539 1.49271 1.45982 1.21629 1.03063 0.94463 0.93406 1.20268 1.12293 0.96040 1.00015 1.19265 0.96152 0.92135 0.81846 1.49705 1.46697 1.15410 1.06370 1.77468 1.16218 0.95208 1.19073 1.22582 1.00425 0.77937 0.99788 1.22685 0.98237 1.06102 0.93257 1.23620 1.04482 0.77660 0.98202 1.86685 1.74211 1.21661 1.38021 0.94294 0.94429 0.98913 0.91022 0.89866 0.91733 0.88019 0.94051 0.93740 0.74613 0.82465 0.86909 0.86472 0.82933 0.89806 0.89782 0.83323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.85 10.58 21.65 0.23 -57.62 16 2 C -0.06 -3.49 5.47 84.86 0.46 -3.03 16 3 Si 0.97 47.22 29.55 68.60 2.03 49.25 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 7 C -0.24 -13.54 9.74 84.03 0.82 -12.72 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.22 16 9 N -0.61 -31.27 3.13 -668.24 -2.09 -33.36 16 10 C 0.17 8.59 5.41 86.86 0.47 9.06 16 11 C -0.13 -4.69 7.08 31.98 0.23 -4.46 16 12 C -0.11 -3.66 6.14 31.78 0.20 -3.46 16 13 C 0.15 5.94 3.21 45.34 0.15 6.09 16 14 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 15 C 0.13 5.23 5.08 86.38 0.44 5.66 16 16 N -0.69 -23.11 5.34 -466.10 -2.49 -25.60 16 17 C 0.59 21.67 7.82 86.75 0.68 22.35 16 18 O -0.57 -25.35 16.90 -3.96 -0.07 -25.42 16 19 C 0.04 1.24 7.10 42.36 0.30 1.54 16 20 C -0.26 -7.32 10.58 22.25 0.24 -7.09 16 21 C 0.27 6.13 7.57 83.21 0.63 6.76 16 22 N -0.38 -7.44 4.08 -457.17 -1.87 -9.31 16 23 N -0.25 -6.39 12.32 -48.15 -0.59 -6.98 16 24 C 0.11 0.84 7.41 86.52 0.64 1.49 16 25 C -0.16 -0.37 6.16 30.85 0.19 -0.18 16 26 C 0.03 0.19 7.00 72.06 0.50 0.69 16 27 O -0.30 -5.11 10.65 -93.87 -1.00 -6.11 16 28 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 29 H 0.04 2.09 6.93 -2.39 -0.02 2.07 16 30 H -0.01 -0.40 8.06 -2.39 -0.02 -0.42 16 31 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 33 H 0.06 2.10 7.79 -2.39 -0.02 2.08 16 34 H 0.10 2.47 8.14 -2.38 -0.02 2.45 16 35 H 0.04 1.93 7.90 -2.39 -0.02 1.91 16 36 H 0.04 2.04 8.06 -2.39 -0.02 2.02 16 37 H 0.42 11.47 8.05 -92.71 -0.75 10.73 16 38 H 0.16 4.55 8.06 -2.91 -0.02 4.53 16 39 H 0.11 0.44 8.14 -2.39 -0.02 0.43 16 40 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.15 -0.84 8.14 -2.39 -0.02 -0.86 16 42 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.15 -0.01 8.14 -2.39 -0.02 -0.03 16 Total: -1.00 -80.04 362.07 0.36 -79.68 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 0.27 Total: 12.77 kcal Atomic # 6 Polarization: 16.75 SS G_CDS: 5.94 Total: 22.69 kcal Atomic # 7 Polarization: -126.06 SS G_CDS: -6.81 Total: -132.87 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -1.07 Total: -31.53 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -80.04 0.36 -79.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028017837.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.995 kcal (2) G-P(sol) polarization free energy of solvation -80.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds