Wall clock time and date at job start Tue Mar 31 2020 12:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86792 * 120.00083 * 2 1 4 4 H 1.48501 * 109.47101 * 239.99684 * 3 2 1 5 5 H 1.48499 * 109.47458 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47252 * 120.00010 * 3 2 1 7 7 C 1.38813 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00220 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99936 * 359.97438 * 7 2 1 10 10 C 1.47420 * 125.64771 * 346.27197 * 9 7 2 11 11 C 1.54911 * 104.92483 * 204.09143 * 10 9 7 12 12 C 1.55271 * 101.52965 * 323.12655 * 11 10 9 13 13 C 1.47023 * 125.64364 * 166.29408 * 9 7 2 14 14 H 1.08997 * 109.88483 * 59.50817 * 13 9 7 15 15 C 1.52998 * 109.88399 * 298.33764 * 13 9 7 16 16 N 1.46504 * 109.46991 * 175.50576 * 15 13 9 17 17 C 1.34772 * 119.99676 * 184.66328 * 16 15 13 18 18 O 1.21570 * 120.00277 * 359.97438 * 17 16 15 19 19 C 1.47729 * 119.99688 * 179.97438 * 17 16 15 20 20 C 1.41292 * 125.94872 * 179.71357 * 19 17 16 21 21 C 1.34860 * 107.70299 * 179.78584 * 20 19 17 22 22 N 1.36391 * 107.92468 * 0.52873 * 21 20 19 23 23 N 1.32111 * 125.95485 * 0.02562 * 19 17 16 24 24 C 1.46716 * 123.62570 * 179.53368 * 22 21 20 25 25 C 1.53525 * 107.96723 * 343.07393 * 24 22 21 26 26 C 1.53224 * 109.30994 * 47.25510 * 25 24 22 27 27 O 1.36031 * 128.63771 * 180.33989 * 21 20 19 28 28 H 0.97000 * 119.99954 * 359.97438 * 1 2 3 29 29 H 1.08998 * 110.36856 * 322.98395 * 10 9 7 30 30 H 1.09001 * 110.36607 * 85.20222 * 10 9 7 31 31 H 1.09002 * 111.00372 * 81.12557 * 11 10 9 32 32 H 1.09005 * 111.00326 * 204.97200 * 11 10 9 33 33 H 1.08999 * 110.62880 * 277.00832 * 12 11 10 34 34 H 1.09000 * 110.75587 * 153.77639 * 12 11 10 35 35 H 1.09000 * 109.47113 * 295.50467 * 15 13 9 36 36 H 1.08998 * 109.47033 * 55.50592 * 15 13 9 37 37 H 0.96996 * 120.00160 * 4.66169 * 16 15 13 38 38 H 1.07999 * 126.14913 * 359.96290 * 20 19 17 39 39 H 1.09004 * 109.76589 * 102.69120 * 24 22 21 40 40 H 1.08997 * 109.76336 * 223.45537 * 24 22 21 41 41 H 1.08999 * 109.50347 * 167.20788 * 25 24 22 42 42 H 1.09012 * 109.49608 * 287.30903 * 25 24 22 43 43 H 1.09004 * 109.50040 * 55.34509 * 26 25 24 44 44 H 1.08995 * 109.50949 * 175.42963 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1119 -2.5503 0.2843 11 6 -0.2604 -4.0153 0.7655 12 6 0.7664 -4.7456 -0.1418 13 6 1.9022 -3.7105 -0.2841 14 1 2.6954 -3.9299 0.4304 15 6 2.4583 -3.7409 -1.7092 16 7 3.1251 -5.0237 -1.9458 17 6 3.7748 -5.2413 -3.1064 18 8 3.8072 -4.3734 -3.9570 19 6 4.4477 -6.5347 -3.3448 20 6 5.1567 -6.8981 -4.5117 21 6 5.6219 -8.1516 -4.3352 22 7 5.2160 -8.5808 -3.1058 23 7 4.4865 -7.5550 -2.5065 24 6 5.5263 -9.9091 -2.5657 25 6 5.9648 -10.8045 -3.7331 26 6 6.9906 -10.0544 -4.5893 27 8 6.3628 -8.9104 -5.1870 28 1 -0.4850 0.8401 0.0004 29 1 -0.4235 -1.8601 1.0682 30 1 -0.6985 -2.3866 -0.6197 31 1 0.0111 -4.1106 1.8169 32 1 -1.2711 -4.3837 0.5897 33 1 0.3274 -4.9724 -1.1133 34 1 1.1302 -5.6534 0.3396 35 1 1.6415 -3.6192 -2.4206 36 1 3.1751 -2.9297 -1.8368 37 1 3.0990 -5.7163 -1.2673 38 1 5.3025 -6.2818 -5.3865 39 1 6.3336 -9.8315 -1.8373 40 1 4.6401 -10.3302 -2.0909 41 1 6.4148 -11.7172 -3.3426 42 1 5.0975 -11.0578 -4.3430 43 1 7.8196 -9.7280 -3.9614 44 1 7.3645 -10.7151 -5.3714 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028017838.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:38 Heat of formation + Delta-G solvation = 36.514409 kcal Electronic energy + Delta-G solvation = -26624.923407 eV Core-core repulsion = 22773.309338 eV Total energy + Delta-G solvation = -3851.614069 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.03604 -39.52061 -38.49313 -37.48220 -35.08044 -34.22139 -32.44323 -31.36986 -29.74624 -29.55755 -28.65613 -26.86107 -25.04299 -24.34434 -23.60071 -22.32057 -20.40707 -20.24788 -19.83903 -19.42696 -18.45819 -17.07545 -16.70076 -16.41630 -15.96039 -15.86112 -15.32526 -15.25970 -14.86690 -14.70500 -14.39090 -14.25711 -13.81110 -13.67291 -13.18139 -13.03867 -12.79446 -12.16474 -12.03695 -11.83671 -11.82242 -11.72985 -11.66053 -11.29699 -11.02883 -10.90937 -10.73418 -10.16713 -10.11118 -9.99803 -9.81271 -9.73326 -9.63476 -9.39444 -8.67267 -8.64341 -8.51582 -6.80339 -5.72143 -3.08632 1.25420 1.83866 2.04310 2.60573 3.42337 3.47094 3.49262 3.51160 3.55730 3.67062 3.86806 4.23470 4.27496 4.52437 4.59306 4.66096 4.81142 4.90918 5.15438 5.17924 5.28937 5.38638 5.45542 5.56686 5.67571 5.69393 5.74347 5.86403 6.09616 6.17227 6.25111 6.30328 6.51024 6.59147 6.66062 6.74420 6.85191 6.93454 7.09522 7.18933 7.56454 7.64758 7.83557 7.85679 8.29854 8.46385 9.21899 9.82371 10.49471 11.39550 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022579 B = 0.002601 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.775402 B =10762.597641 C =11590.476390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.002 4.002 3 Si 0.911 3.089 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.233 4.233 8 H 0.076 0.924 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.148 4.148 12 C -0.128 4.128 13 C 0.152 3.848 14 H 0.039 0.961 15 C 0.108 3.892 16 N -0.706 5.706 17 C 0.592 3.408 18 O -0.525 6.525 19 C 0.060 3.940 20 C -0.226 4.226 21 C 0.260 3.740 22 N -0.396 5.396 23 N -0.245 5.245 24 C 0.128 3.872 25 C -0.175 4.175 26 C 0.049 3.951 27 O -0.286 6.286 28 H 0.254 0.746 29 H 0.074 0.926 30 H 0.025 0.975 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.402 0.598 38 H 0.166 0.834 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.111 0.889 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.106 -25.378 -5.050 28.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.199 4.199 3 Si 0.741 3.259 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.362 4.362 8 H 0.094 0.906 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.166 4.166 13 C 0.043 3.957 14 H 0.057 0.943 15 C -0.017 4.017 16 N -0.357 5.357 17 C 0.374 3.626 18 O -0.399 6.399 19 C -0.108 4.108 20 C -0.256 4.256 21 C 0.094 3.906 22 N -0.194 5.194 23 N -0.076 5.076 24 C 0.008 3.992 25 C -0.214 4.214 26 C -0.027 4.027 27 O -0.193 6.193 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.043 0.957 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.236 0.764 38 H 0.184 0.816 39 H 0.109 0.891 40 H 0.123 0.877 41 H 0.129 0.871 42 H 0.108 0.892 43 H 0.091 0.909 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.784 -24.970 -4.751 27.611 hybrid contribution 0.803 0.470 -0.400 1.013 sum 11.587 -24.500 -5.151 27.587 Atomic orbital electron populations 1.69930 1.05005 1.25377 1.55968 1.24898 0.95684 0.97847 1.01464 0.86218 0.78577 0.83049 0.78054 1.20888 1.21600 1.21114 1.18958 0.90417 0.82184 1.44595 0.90628 1.44485 1.05864 1.00777 1.80150 1.21471 0.84667 0.90279 0.98905 1.23024 0.97432 0.99596 0.98637 1.22648 0.97047 0.97023 0.99855 1.21132 0.94489 0.88021 0.92023 0.94334 1.22342 0.96820 0.83035 0.99517 1.46024 1.53283 1.18898 1.17447 1.16906 0.78758 0.84128 0.82844 1.90827 1.60643 1.43841 1.44594 1.22172 1.00565 0.94709 0.93309 1.20238 1.09793 0.93340 1.02220 1.19423 0.95695 0.91652 0.83836 1.49283 1.43488 1.13370 1.13244 1.77579 1.14722 0.95442 1.19813 1.21957 1.03065 0.77631 0.96593 1.22649 1.01357 0.99743 0.97634 1.23116 0.94370 0.86154 0.99026 1.86664 1.62194 1.38387 1.32067 0.93583 0.90797 0.95653 0.92336 0.92340 0.91767 0.92318 0.91613 0.90724 0.76351 0.81647 0.89093 0.87748 0.87082 0.89165 0.90865 0.86202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.91 10.54 55.49 0.58 -26.32 16 2 C 0.00 -0.05 5.47 -17.43 -0.10 -0.15 16 3 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.23 -6.47 9.73 -15.06 -0.15 -6.62 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.59 -14.81 3.13 -162.57 -0.51 -15.32 16 10 C 0.17 4.13 5.42 -2.53 -0.01 4.12 16 11 C -0.15 -2.76 7.10 -24.52 -0.17 -2.93 16 12 C -0.13 -2.19 6.07 -24.83 -0.15 -2.35 16 13 C 0.15 3.08 3.22 -66.95 -0.22 2.87 16 14 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 15 C 0.11 2.16 5.09 -4.04 -0.02 2.14 16 16 N -0.71 -11.86 5.40 -61.29 -0.33 -12.19 16 17 C 0.59 10.55 7.83 -12.38 -0.10 10.46 16 18 O -0.53 -11.15 16.90 5.30 0.09 -11.07 16 19 C 0.06 0.93 7.10 -82.71 -0.59 0.34 16 20 C -0.23 -3.20 10.58 -39.62 -0.42 -3.62 16 21 C 0.26 3.09 7.57 -16.72 -0.13 2.96 16 22 N -0.40 -4.33 4.08 -60.94 -0.25 -4.58 16 23 N -0.25 -3.36 12.32 33.43 0.41 -2.94 16 24 C 0.13 0.74 7.41 -3.65 -0.03 0.72 16 25 C -0.18 -0.59 6.16 -26.34 -0.16 -0.75 16 26 C 0.05 0.23 7.00 37.27 0.26 0.49 16 27 O -0.29 -2.75 10.65 -19.84 -0.21 -2.96 16 28 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.07 1.98 6.86 -51.93 -0.36 1.62 16 30 H 0.03 0.66 8.08 -51.93 -0.42 0.24 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 1.09 7.78 -51.93 -0.40 0.69 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 1.42 8.03 -51.93 -0.42 1.01 16 36 H 0.07 1.69 7.86 -51.93 -0.41 1.28 16 37 H 0.40 5.86 7.94 -40.82 -0.32 5.54 16 38 H 0.17 2.25 8.06 -52.49 -0.42 1.83 16 39 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.11 0.03 8.14 -51.93 -0.42 -0.40 16 42 H 0.09 0.37 8.14 -51.92 -0.42 -0.05 16 43 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.12 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 361.81 15.07 5.45 5.45 Total: -1.00 -34.33 361.81 -8.28 -42.62 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -6.53 Total: 2.26 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: -1.98 Total: 7.68 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: -0.09 Total: -61.36 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.12 Total: -14.03 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.33 -8.28 -42.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028017838.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.132 kcal (2) G-P(sol) polarization free energy of solvation -34.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds