Wall clock time and date at job start Tue Mar 31 2020 12:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86792 * 120.00083 * 2 1 4 4 H 1.48501 * 109.47101 * 239.99684 * 3 2 1 5 5 H 1.48499 * 109.47458 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47252 * 120.00010 * 3 2 1 7 7 C 1.38813 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00220 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99936 * 359.97438 * 7 2 1 10 10 C 1.47420 * 125.64771 * 346.27197 * 9 7 2 11 11 C 1.54911 * 104.92483 * 204.09143 * 10 9 7 12 12 C 1.55271 * 101.52965 * 323.12655 * 11 10 9 13 13 C 1.47023 * 125.64364 * 166.29408 * 9 7 2 14 14 H 1.08997 * 109.88483 * 59.50817 * 13 9 7 15 15 C 1.52998 * 109.88399 * 298.33764 * 13 9 7 16 16 N 1.46504 * 109.46991 * 175.50576 * 15 13 9 17 17 C 1.34772 * 119.99676 * 184.66328 * 16 15 13 18 18 O 1.21570 * 120.00277 * 359.97438 * 17 16 15 19 19 C 1.47729 * 119.99688 * 179.97438 * 17 16 15 20 20 C 1.41292 * 125.94872 * 179.71357 * 19 17 16 21 21 C 1.34860 * 107.70299 * 179.78584 * 20 19 17 22 22 N 1.36391 * 107.92468 * 0.52873 * 21 20 19 23 23 N 1.32111 * 125.95485 * 0.02562 * 19 17 16 24 24 C 1.46716 * 123.62570 * 179.53368 * 22 21 20 25 25 C 1.53525 * 107.96723 * 343.07393 * 24 22 21 26 26 C 1.53224 * 109.30994 * 47.25510 * 25 24 22 27 27 O 1.36031 * 128.63771 * 180.33989 * 21 20 19 28 28 H 0.97000 * 119.99954 * 359.97438 * 1 2 3 29 29 H 1.08998 * 110.36856 * 322.98395 * 10 9 7 30 30 H 1.09001 * 110.36607 * 85.20222 * 10 9 7 31 31 H 1.09002 * 111.00372 * 81.12557 * 11 10 9 32 32 H 1.09005 * 111.00326 * 204.97200 * 11 10 9 33 33 H 1.08999 * 110.62880 * 277.00832 * 12 11 10 34 34 H 1.09000 * 110.75587 * 153.77639 * 12 11 10 35 35 H 1.09000 * 109.47113 * 295.50467 * 15 13 9 36 36 H 1.08998 * 109.47033 * 55.50592 * 15 13 9 37 37 H 0.96996 * 120.00160 * 4.66169 * 16 15 13 38 38 H 1.07999 * 126.14913 * 359.96290 * 20 19 17 39 39 H 1.09004 * 109.76589 * 102.69120 * 24 22 21 40 40 H 1.08997 * 109.76336 * 223.45537 * 24 22 21 41 41 H 1.08999 * 109.50347 * 167.20788 * 25 24 22 42 42 H 1.09012 * 109.49608 * 287.30903 * 25 24 22 43 43 H 1.09004 * 109.50040 * 55.34509 * 26 25 24 44 44 H 1.08995 * 109.50949 * 175.42963 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1119 -2.5503 0.2843 11 6 -0.2604 -4.0153 0.7655 12 6 0.7664 -4.7456 -0.1418 13 6 1.9022 -3.7105 -0.2841 14 1 2.6954 -3.9299 0.4304 15 6 2.4583 -3.7409 -1.7092 16 7 3.1251 -5.0237 -1.9458 17 6 3.7748 -5.2413 -3.1064 18 8 3.8072 -4.3734 -3.9570 19 6 4.4477 -6.5347 -3.3448 20 6 5.1567 -6.8981 -4.5117 21 6 5.6219 -8.1516 -4.3352 22 7 5.2160 -8.5808 -3.1058 23 7 4.4865 -7.5550 -2.5065 24 6 5.5263 -9.9091 -2.5657 25 6 5.9648 -10.8045 -3.7331 26 6 6.9906 -10.0544 -4.5893 27 8 6.3628 -8.9104 -5.1870 28 1 -0.4850 0.8401 0.0004 29 1 -0.4235 -1.8601 1.0682 30 1 -0.6985 -2.3866 -0.6197 31 1 0.0111 -4.1106 1.8169 32 1 -1.2711 -4.3837 0.5897 33 1 0.3274 -4.9724 -1.1133 34 1 1.1302 -5.6534 0.3396 35 1 1.6415 -3.6192 -2.4206 36 1 3.1751 -2.9297 -1.8368 37 1 3.0990 -5.7163 -1.2673 38 1 5.3025 -6.2818 -5.3865 39 1 6.3336 -9.8315 -1.8373 40 1 4.6401 -10.3302 -2.0909 41 1 6.4148 -11.7172 -3.3426 42 1 5.0975 -11.0578 -4.3430 43 1 7.8196 -9.7280 -3.9614 44 1 7.3645 -10.7151 -5.3714 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028017838.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:37 Heat of formation + Delta-G solvation = 10.622221 kcal Electronic energy + Delta-G solvation = -26626.046177 eV Core-core repulsion = 22773.309338 eV Total energy + Delta-G solvation = -3852.736839 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.91902 -40.81948 -39.53292 -39.07313 -35.84173 -35.66207 -34.40553 -32.25848 -31.37731 -30.62790 -30.27945 -27.61026 -26.70413 -25.90757 -24.60648 -23.44541 -22.03374 -21.38628 -21.04517 -20.74268 -19.51345 -18.65963 -17.80857 -17.48010 -17.23081 -16.78107 -16.68969 -16.37163 -16.04436 -15.93107 -15.69501 -15.65378 -15.10044 -14.79461 -14.59221 -14.28545 -13.97610 -13.63576 -13.49041 -13.32460 -13.02261 -12.86346 -12.65958 -12.62949 -12.43312 -12.11890 -12.04994 -11.88302 -11.87583 -11.69689 -11.47430 -11.40980 -11.34851 -10.67001 -10.37660 -10.07912 -9.60470 -8.85794 -7.86996 -5.24651 0.16176 1.00452 1.05226 1.44938 1.48906 1.54273 1.78067 2.22529 2.26621 2.51082 3.01255 3.31944 3.51731 3.58057 3.74779 3.91297 3.97502 3.99606 4.01571 4.19422 4.27405 4.31534 4.42634 4.45340 4.54677 4.56089 4.59530 4.69606 4.73560 4.93860 4.95828 5.00119 5.06463 5.14953 5.18969 5.23800 5.31564 5.48110 5.55002 5.68124 5.79891 6.12219 6.17445 6.24182 6.53135 7.07053 7.10521 7.76950 8.42627 9.23378 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022579 B = 0.002601 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.775402 B =10762.597641 C =11590.476390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.059 4.059 3 Si 0.972 3.028 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.241 4.241 8 H 0.076 0.924 9 N -0.610 5.610 10 C 0.173 3.827 11 C -0.132 4.132 12 C -0.115 4.115 13 C 0.149 3.851 14 H 0.050 0.950 15 C 0.127 3.873 16 N -0.691 5.691 17 C 0.593 3.407 18 O -0.569 6.569 19 C 0.040 3.960 20 C -0.256 4.256 21 C 0.274 3.726 22 N -0.383 5.383 23 N -0.248 5.248 24 C 0.111 3.889 25 C -0.164 4.164 26 C 0.034 3.966 27 O -0.298 6.298 28 H 0.248 0.752 29 H 0.039 0.961 30 H -0.007 1.007 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.102 0.898 35 H 0.044 0.956 36 H 0.041 0.959 37 H 0.417 0.583 38 H 0.158 0.842 39 H 0.112 0.888 40 H 0.118 0.882 41 H 0.153 0.847 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.741 -29.445 -4.245 32.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.253 4.253 3 Si 0.800 3.200 4 H -0.209 1.209 5 H -0.218 1.218 6 H -0.200 1.200 7 C -0.371 4.371 8 H 0.093 0.907 9 N -0.334 5.334 10 C 0.048 3.952 11 C -0.170 4.170 12 C -0.153 4.153 13 C 0.041 3.959 14 H 0.068 0.932 15 C 0.001 3.999 16 N -0.342 5.342 17 C 0.377 3.623 18 O -0.446 6.446 19 C -0.126 4.126 20 C -0.286 4.286 21 C 0.106 3.894 22 N -0.182 5.182 23 N -0.080 5.080 24 C -0.007 4.007 25 C -0.203 4.203 26 C -0.040 4.040 27 O -0.206 6.206 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.011 0.989 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.120 0.880 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.254 0.746 38 H 0.175 0.825 39 H 0.130 0.870 40 H 0.136 0.864 41 H 0.171 0.829 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 12.449 -29.118 -3.918 31.909 hybrid contribution 0.423 1.515 -0.675 1.711 sum 12.871 -27.603 -4.593 30.801 Atomic orbital electron populations 1.70133 1.06217 1.25473 1.57458 1.25667 0.96545 1.00949 1.02118 0.85254 0.77338 0.79210 0.78169 1.20894 1.21812 1.19960 1.19268 0.90741 0.83628 1.43419 0.90652 1.44742 1.06392 1.01815 1.80463 1.21298 0.83893 0.93541 0.96500 1.22890 0.99495 0.95303 0.99354 1.22639 0.95120 0.97286 1.00225 1.21318 0.95983 0.86859 0.91719 0.93246 1.21848 0.95356 0.83650 0.99043 1.45723 1.52754 1.17971 1.17783 1.17234 0.78115 0.84745 0.82166 1.90794 1.62202 1.45640 1.45940 1.21628 1.02188 0.94180 0.94571 1.20265 1.11297 0.94928 1.02144 1.19267 0.94867 0.91120 0.84141 1.49703 1.41633 1.14104 1.12727 1.77461 1.15148 0.95648 1.19710 1.22583 1.04552 0.75413 0.98196 1.22686 1.00889 1.00311 0.96367 1.23620 0.94731 0.85041 1.00596 1.86685 1.61824 1.39684 1.32371 0.94265 0.94263 0.98911 0.91122 0.89752 0.91465 0.87965 0.93747 0.94010 0.74598 0.82469 0.87030 0.86351 0.82941 0.89705 0.89883 0.83293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.76 10.54 21.65 0.23 -57.53 16 2 C -0.06 -3.44 5.47 84.86 0.46 -2.98 16 3 Si 0.97 47.34 29.55 68.60 2.03 49.36 16 4 H -0.28 -13.63 7.11 99.48 0.71 -12.93 16 5 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 7 C -0.24 -13.78 9.73 84.03 0.82 -12.97 16 8 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 9 N -0.61 -31.37 3.13 -668.26 -2.09 -33.46 16 10 C 0.17 8.53 5.42 86.86 0.47 9.00 16 11 C -0.13 -4.66 7.10 32.03 0.23 -4.43 16 12 C -0.11 -3.66 6.07 31.82 0.19 -3.46 16 13 C 0.15 5.96 3.22 45.34 0.15 6.11 16 14 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 15 C 0.13 5.23 5.09 86.38 0.44 5.67 16 16 N -0.69 -23.21 5.40 -466.08 -2.52 -25.73 16 17 C 0.59 21.76 7.83 86.75 0.68 22.44 16 18 O -0.57 -25.47 16.90 -3.94 -0.07 -25.54 16 19 C 0.04 1.24 7.10 42.36 0.30 1.54 16 20 C -0.26 -7.36 10.58 22.24 0.24 -7.12 16 21 C 0.27 6.15 7.57 83.21 0.63 6.78 16 22 N -0.38 -7.46 4.08 -457.19 -1.87 -9.32 16 23 N -0.25 -6.41 12.32 -48.15 -0.59 -7.00 16 24 C 0.11 0.85 7.41 86.51 0.64 1.49 16 25 C -0.16 -0.36 6.16 30.85 0.19 -0.17 16 26 C 0.03 0.19 7.00 72.06 0.50 0.70 16 27 O -0.30 -5.13 10.65 -93.90 -1.00 -6.13 16 28 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 29 H 0.04 2.18 6.86 -2.39 -0.02 2.16 16 30 H -0.01 -0.39 8.08 -2.39 -0.02 -0.41 16 31 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 33 H 0.07 2.13 7.78 -2.39 -0.02 2.11 16 34 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.04 2.01 8.03 -2.39 -0.02 1.99 16 36 H 0.04 1.98 7.86 -2.39 -0.02 1.96 16 37 H 0.42 11.50 7.94 -92.71 -0.74 10.76 16 38 H 0.16 4.57 8.06 -2.91 -0.02 4.54 16 39 H 0.11 0.47 8.14 -2.38 -0.02 0.45 16 40 H 0.12 0.64 8.14 -2.39 -0.02 0.63 16 41 H 0.15 -0.84 8.14 -2.39 -0.02 -0.86 16 42 H 0.08 0.35 8.14 -2.38 -0.02 0.34 16 43 H 0.08 0.35 8.14 -2.38 -0.02 0.33 16 44 H 0.15 -0.01 8.14 -2.39 -0.02 -0.03 16 Total: -1.00 -80.17 361.81 0.34 -79.83 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.28 Total: 12.92 kcal Atomic # 6 Polarization: 16.66 SS G_CDS: 5.94 Total: 22.60 kcal Atomic # 7 Polarization: -126.21 SS G_CDS: -6.84 Total: -133.05 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -1.07 Total: -31.66 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.36 kcal Total: -80.17 0.34 -79.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028017838.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.450 kcal (2) G-P(sol) polarization free energy of solvation -80.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds