Wall clock time and date at job start Tue Mar 31 2020 12:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00356 * 2 1 4 4 H 1.48493 * 109.47341 * 270.00395 * 3 2 1 5 5 H 1.48503 * 109.46756 * 30.00224 * 3 2 1 6 6 H 1.48496 * 109.46957 * 149.99997 * 3 2 1 7 7 C 1.38813 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00306 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.47024 * 125.64618 * 359.69358 * 9 7 2 11 11 C 1.54327 * 107.26774 * 179.20447 * 10 9 7 12 12 C 1.55155 * 102.94571 * 337.80617 * 11 10 9 13 13 H 1.08997 * 111.00368 * 277.43464 * 12 11 10 14 14 C 1.52996 * 111.00532 * 153.57522 * 12 11 10 15 15 N 1.46497 * 109.47114 * 181.35298 * 14 12 11 16 16 C 1.34775 * 119.99944 * 180.02562 * 15 14 12 17 17 O 1.21665 * 120.00502 * 0.02562 * 16 15 14 18 18 C 1.46925 * 120.00091 * 179.97438 * 16 15 14 19 19 C 1.41705 * 126.56075 * 359.68345 * 18 16 15 20 20 N 1.30561 * 108.19328 * 179.85796 * 19 18 16 21 21 N 1.39350 * 109.06255 * 0.35002 * 20 19 18 22 22 C 1.35157 * 108.46328 * 359.83732 * 21 20 19 23 23 O 1.35465 * 123.87071 * 179.82356 * 22 21 20 24 24 C 1.43540 * 115.05373 * 344.51974 * 23 22 21 25 25 C 1.53250 * 109.17744 * 46.90353 * 24 23 22 26 26 C 1.46791 * 127.97635 * 179.97438 * 21 20 19 27 27 C 1.47426 * 125.64875 * 180.02562 * 9 7 2 28 28 H 0.97001 * 119.99407 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.88316 * 298.61939 * 10 9 7 30 30 H 1.09002 * 109.88101 * 59.78834 * 10 9 7 31 31 H 1.08999 * 110.71564 * 219.44370 * 11 10 9 32 32 H 1.09000 * 110.86856 * 96.24526 * 11 10 9 33 33 H 1.09002 * 109.47242 * 301.35140 * 14 12 11 34 34 H 1.09002 * 109.46968 * 61.35264 * 14 12 11 35 35 H 0.97000 * 119.99896 * 359.97438 * 15 14 12 36 36 H 1.07998 * 125.90013 * 0.02562 * 19 18 16 37 37 H 1.08997 * 109.52303 * 286.99137 * 24 23 22 38 38 H 1.09002 * 109.51549 * 166.80789 * 24 23 22 39 39 H 1.09008 * 109.51003 * 175.93900 * 25 24 23 40 40 H 1.09001 * 109.51405 * 55.80089 * 25 24 23 41 41 H 1.09006 * 109.76041 * 282.50626 * 26 21 20 42 42 H 1.08995 * 109.76256 * 43.26527 * 26 21 20 43 43 H 1.09002 * 110.36518 * 322.70049 * 27 9 7 44 44 H 1.08995 * 110.36673 * 84.91158 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1376 -2.5327 0.0064 11 6 -0.4487 -4.0441 -0.0169 12 6 0.8490 -4.6570 -0.6067 13 1 0.8490 -4.5986 -1.6951 14 6 1.0361 -6.1010 -0.1371 15 7 2.2848 -6.6352 -0.6863 16 6 2.6586 -7.8990 -0.4047 17 8 1.9589 -8.5966 0.3053 18 6 3.9106 -8.4350 -0.9559 19 6 4.8223 -7.7522 -1.7990 20 7 5.8102 -8.5612 -2.0712 21 7 5.5862 -9.7822 -1.4380 22 6 4.4217 -9.7037 -0.7565 23 8 3.9024 -10.7217 -0.0292 24 6 4.4760 -12.0110 -0.2922 25 6 6.0036 -11.8896 -0.3033 26 6 6.4313 -10.9821 -1.4649 27 6 1.9333 -3.7312 -0.0005 28 1 -0.4849 0.8401 -0.0004 29 1 -0.5503 -2.0832 0.9095 30 1 -0.5617 -2.0533 -0.8759 31 1 -1.3017 -4.2523 -0.6628 32 1 -0.6290 -4.4190 0.9906 33 1 1.0780 -6.1265 0.9518 34 1 0.1986 -6.7069 -0.4828 35 1 2.8421 -6.0795 -1.2533 36 1 4.7192 -6.7370 -2.1527 37 1 4.1323 -12.3717 -1.2617 38 1 4.1719 -12.7106 0.4864 39 1 6.4464 -12.8775 -0.4308 40 1 6.3413 -11.4575 0.6387 41 1 6.2963 -11.5068 -2.4108 42 1 7.4771 -10.6990 -1.3458 43 1 2.8303 -3.7416 -0.6198 44 1 2.1723 -4.0394 1.0172 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028662221.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:40 Heat of formation + Delta-G solvation = 33.366840 kcal Electronic energy + Delta-G solvation = -26572.000676 eV Core-core repulsion = 22720.250118 eV Total energy + Delta-G solvation = -3851.750558 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.18014 -39.34120 -38.75888 -37.46888 -35.08706 -34.43974 -32.44539 -31.33092 -30.29827 -29.46087 -28.09123 -26.82172 -25.56250 -24.25310 -23.17908 -22.46480 -20.54164 -20.18895 -19.82468 -19.70936 -18.45601 -17.20025 -16.84890 -16.63723 -15.98272 -15.70888 -15.33379 -15.17980 -15.02806 -14.75753 -14.58168 -14.22141 -13.75195 -13.60077 -13.32254 -13.04070 -12.82621 -12.26089 -12.24771 -12.00608 -11.90753 -11.71036 -11.64166 -11.28682 -11.08428 -10.85264 -10.74999 -10.30010 -10.08990 -9.92148 -9.79767 -9.60849 -9.57435 -9.56660 -8.86566 -8.55557 -8.53721 -6.77487 -5.66491 -2.99614 1.33856 1.75458 1.99293 2.61037 3.42852 3.43201 3.48123 3.50202 3.57414 3.67907 3.84077 4.21300 4.25482 4.53655 4.56086 4.61447 4.74777 4.89780 4.91211 5.09910 5.18108 5.22360 5.34067 5.38739 5.51491 5.61727 5.71425 5.78702 5.99948 6.12497 6.16852 6.22160 6.43447 6.57025 6.62104 6.64120 6.80522 6.88036 7.00842 7.25245 7.61372 7.69730 7.80203 7.88156 8.31422 8.53019 9.27271 9.87857 10.54345 11.45332 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024032 B = 0.002443 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.846641 B =11460.237083 C =12355.370454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.117 4.117 13 H 0.080 0.920 14 C 0.137 3.863 15 N -0.722 5.722 16 C 0.595 3.405 17 O -0.547 6.547 18 C -0.303 4.303 19 C 0.105 3.895 20 N -0.285 5.285 21 N -0.400 5.400 22 C 0.336 3.664 23 O -0.262 6.262 24 C 0.043 3.957 25 C -0.178 4.178 26 C 0.128 3.872 27 C 0.142 3.858 28 H 0.252 0.748 29 H 0.042 0.958 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.399 0.601 36 H 0.199 0.801 37 H 0.076 0.924 38 H 0.124 0.876 39 H 0.113 0.887 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.106 0.894 43 H 0.036 0.964 44 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.108 -26.065 -4.008 28.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.053 3.947 11 C -0.174 4.174 12 C -0.137 4.137 13 H 0.098 0.902 14 C 0.013 3.987 15 N -0.373 5.373 16 C 0.382 3.618 17 O -0.426 6.426 18 C -0.318 4.318 19 C -0.083 4.083 20 N -0.106 5.106 21 N -0.194 5.194 22 C 0.164 3.836 23 O -0.166 6.166 24 C -0.033 4.033 25 C -0.217 4.217 26 C 0.008 3.992 27 C 0.016 3.984 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.233 0.767 36 H 0.216 0.784 37 H 0.094 0.906 38 H 0.142 0.858 39 H 0.131 0.869 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.124 0.876 43 H 0.054 0.946 44 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 11.507 -26.634 -3.890 29.273 hybrid contribution 0.219 1.107 0.060 1.130 sum 11.726 -25.528 -3.830 28.352 Atomic orbital electron populations 1.69970 1.04868 1.24940 1.57230 1.24804 0.95722 0.97654 1.02422 0.86124 0.78578 0.83581 0.77517 1.21650 1.21732 1.20736 1.19060 0.90414 0.82473 1.43557 0.90485 1.44492 1.01761 0.99904 1.87162 1.21143 0.84324 0.88230 1.01037 1.22856 0.95521 0.99322 0.99689 1.22612 0.98474 0.92135 1.00495 0.90199 1.21347 0.85148 0.93512 0.98691 1.45767 1.25202 1.13394 1.52937 1.16894 0.83570 0.81433 0.79856 1.90796 1.54612 1.58642 1.38540 1.19178 1.03041 0.93722 1.15888 1.24101 0.90086 0.99641 0.94517 1.77089 1.23479 0.89850 1.20177 1.49005 1.17105 1.12603 1.40727 1.19729 0.85126 0.89981 0.88811 1.86767 1.57853 1.14782 1.57216 1.23256 0.92480 0.83260 1.04257 1.22688 0.97059 1.02174 0.99745 1.21987 0.95673 0.81532 1.00045 1.21573 0.93973 0.86045 0.96836 0.93811 0.93993 0.93570 0.92031 0.92215 0.91451 0.91772 0.76661 0.78398 0.90611 0.85826 0.86870 0.89026 0.89000 0.87620 0.94616 0.96257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.37 10.31 55.49 0.57 -26.80 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.23 -6.36 10.28 -15.06 -0.15 -6.51 16 8 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 9 N -0.61 -15.55 3.39 -170.05 -0.58 -16.13 16 10 C 0.18 4.33 5.37 -3.06 -0.02 4.32 16 11 C -0.13 -2.51 6.42 -24.90 -0.16 -2.67 16 12 C -0.12 -1.99 3.11 -88.46 -0.27 -2.26 16 13 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 14 C 0.14 2.08 5.12 -4.05 -0.02 2.06 16 15 N -0.72 -10.07 5.40 -61.54 -0.33 -10.41 16 16 C 0.60 9.34 7.80 -12.74 -0.10 9.24 16 17 O -0.55 -10.53 16.53 2.87 0.05 -10.48 16 18 C -0.30 -4.11 6.14 -105.06 -0.64 -4.75 16 19 C 0.11 1.18 11.51 -16.77 -0.19 0.99 16 20 N -0.28 -3.33 12.54 30.97 0.39 -2.94 16 21 N -0.40 -4.14 4.04 -60.48 -0.24 -4.38 16 22 C 0.34 4.22 7.50 -16.09 -0.12 4.10 16 23 O -0.26 -3.10 10.18 -20.44 -0.21 -3.31 16 24 C 0.04 0.25 7.02 37.29 0.26 0.51 16 25 C -0.18 -0.64 6.16 -26.35 -0.16 -0.81 16 26 C 0.13 0.69 7.41 -3.63 -0.03 0.66 16 27 C 0.14 2.88 6.41 -2.52 -0.02 2.86 16 28 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 30 H 0.05 1.24 7.38 -51.93 -0.38 0.86 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 1.06 8.04 -51.93 -0.42 0.64 16 33 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.40 4.68 7.29 -40.82 -0.30 4.39 16 36 H 0.20 1.58 7.51 -52.49 -0.39 1.18 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.11 0.03 8.14 -51.92 -0.42 -0.39 16 40 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.02 0.41 8.01 -51.93 -0.42 -0.01 16 LS Contribution 360.38 15.07 5.43 5.43 Total: -1.00 -37.09 360.38 -8.16 -45.25 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -6.49 Total: -0.84 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: -1.72 Total: 7.37 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: -0.19 Total: -60.66 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.16 Total: -13.80 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -37.09 -8.16 -45.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028662221.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.618 kcal (2) G-P(sol) polarization free energy of solvation -37.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds