Wall clock time and date at job start Tue Mar 31 2020 12:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00356 * 2 1 4 4 H 1.48493 * 109.47341 * 270.00395 * 3 2 1 5 5 H 1.48503 * 109.46756 * 30.00224 * 3 2 1 6 6 H 1.48496 * 109.46957 * 149.99997 * 3 2 1 7 7 C 1.38813 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00306 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.47024 * 125.64618 * 359.69358 * 9 7 2 11 11 C 1.54327 * 107.26774 * 179.20447 * 10 9 7 12 12 C 1.55155 * 102.94571 * 337.80617 * 11 10 9 13 13 H 1.08997 * 111.00368 * 277.43464 * 12 11 10 14 14 C 1.52996 * 111.00532 * 153.57522 * 12 11 10 15 15 N 1.46497 * 109.47114 * 181.35298 * 14 12 11 16 16 C 1.34775 * 119.99944 * 180.02562 * 15 14 12 17 17 O 1.21665 * 120.00502 * 0.02562 * 16 15 14 18 18 C 1.46925 * 120.00091 * 179.97438 * 16 15 14 19 19 C 1.41705 * 126.56075 * 359.68345 * 18 16 15 20 20 N 1.30561 * 108.19328 * 179.85796 * 19 18 16 21 21 N 1.39350 * 109.06255 * 0.35002 * 20 19 18 22 22 C 1.35157 * 108.46328 * 359.83732 * 21 20 19 23 23 O 1.35465 * 123.87071 * 179.82356 * 22 21 20 24 24 C 1.43540 * 115.05373 * 344.51974 * 23 22 21 25 25 C 1.53250 * 109.17744 * 46.90353 * 24 23 22 26 26 C 1.46791 * 127.97635 * 179.97438 * 21 20 19 27 27 C 1.47426 * 125.64875 * 180.02562 * 9 7 2 28 28 H 0.97001 * 119.99407 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.88316 * 298.61939 * 10 9 7 30 30 H 1.09002 * 109.88101 * 59.78834 * 10 9 7 31 31 H 1.08999 * 110.71564 * 219.44370 * 11 10 9 32 32 H 1.09000 * 110.86856 * 96.24526 * 11 10 9 33 33 H 1.09002 * 109.47242 * 301.35140 * 14 12 11 34 34 H 1.09002 * 109.46968 * 61.35264 * 14 12 11 35 35 H 0.97000 * 119.99896 * 359.97438 * 15 14 12 36 36 H 1.07998 * 125.90013 * 0.02562 * 19 18 16 37 37 H 1.08997 * 109.52303 * 286.99137 * 24 23 22 38 38 H 1.09002 * 109.51549 * 166.80789 * 24 23 22 39 39 H 1.09008 * 109.51003 * 175.93900 * 25 24 23 40 40 H 1.09001 * 109.51405 * 55.80089 * 25 24 23 41 41 H 1.09006 * 109.76041 * 282.50626 * 26 21 20 42 42 H 1.08995 * 109.76256 * 43.26527 * 26 21 20 43 43 H 1.09002 * 110.36518 * 322.70049 * 27 9 7 44 44 H 1.08995 * 110.36673 * 84.91158 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1376 -2.5327 0.0064 11 6 -0.4487 -4.0441 -0.0169 12 6 0.8490 -4.6570 -0.6067 13 1 0.8490 -4.5986 -1.6951 14 6 1.0361 -6.1010 -0.1371 15 7 2.2848 -6.6352 -0.6863 16 6 2.6586 -7.8990 -0.4047 17 8 1.9589 -8.5966 0.3053 18 6 3.9106 -8.4350 -0.9559 19 6 4.8223 -7.7522 -1.7990 20 7 5.8102 -8.5612 -2.0712 21 7 5.5862 -9.7822 -1.4380 22 6 4.4217 -9.7037 -0.7565 23 8 3.9024 -10.7217 -0.0292 24 6 4.4760 -12.0110 -0.2922 25 6 6.0036 -11.8896 -0.3033 26 6 6.4313 -10.9821 -1.4649 27 6 1.9333 -3.7312 -0.0005 28 1 -0.4849 0.8401 -0.0004 29 1 -0.5503 -2.0832 0.9095 30 1 -0.5617 -2.0533 -0.8759 31 1 -1.3017 -4.2523 -0.6628 32 1 -0.6290 -4.4190 0.9906 33 1 1.0780 -6.1265 0.9518 34 1 0.1986 -6.7069 -0.4828 35 1 2.8421 -6.0795 -1.2533 36 1 4.7192 -6.7370 -2.1527 37 1 4.1323 -12.3717 -1.2617 38 1 4.1719 -12.7106 0.4864 39 1 6.4464 -12.8775 -0.4308 40 1 6.3413 -11.4575 0.6387 41 1 6.2963 -11.5068 -2.4108 42 1 7.4771 -10.6990 -1.3458 43 1 2.8303 -3.7416 -0.6198 44 1 2.1723 -4.0394 1.0172 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028662221.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:39 Heat of formation + Delta-G solvation = 5.523058 kcal Electronic energy + Delta-G solvation = -26573.208073 eV Core-core repulsion = 22720.250118 eV Total energy + Delta-G solvation = -3852.957955 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.95432 -40.47398 -39.61734 -39.07998 -35.93226 -35.64675 -34.24662 -32.07815 -31.66266 -30.84744 -29.63677 -27.45967 -27.16957 -25.60928 -24.22284 -23.41958 -22.02481 -21.35196 -21.10267 -20.73527 -19.39643 -18.75680 -17.95796 -17.53861 -17.17653 -16.72555 -16.51330 -16.13360 -16.08180 -15.83254 -15.72777 -15.48701 -15.20461 -14.55081 -14.50638 -14.36217 -13.91461 -13.77044 -13.45459 -13.32891 -12.96453 -12.74424 -12.70203 -12.60372 -12.57266 -12.15849 -11.99870 -11.92283 -11.81027 -11.73347 -11.48125 -11.40459 -10.86569 -10.66939 -10.31201 -10.04256 -9.48626 -8.85447 -7.81420 -5.16547 0.45893 1.07947 1.09614 1.48021 1.50092 1.58611 1.98963 2.35217 2.47703 2.52676 3.15688 3.36884 3.49479 3.65341 3.69378 3.87525 3.89757 3.97205 4.05644 4.09659 4.10356 4.25191 4.31987 4.49828 4.52023 4.57767 4.59834 4.68088 4.79576 4.88144 4.88854 4.98909 5.07974 5.12490 5.14170 5.38028 5.44521 5.49847 5.57441 5.72387 5.82332 6.15466 6.24053 6.42591 6.70808 7.14254 7.38111 7.82315 8.47003 9.29285 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024032 B = 0.002443 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.846641 B =11460.237083 C =12355.370454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.070 4.070 3 Si 0.979 3.021 4 H -0.284 1.284 5 H -0.297 1.297 6 H -0.269 1.269 7 C -0.239 4.239 8 H 0.084 0.916 9 N -0.629 5.629 10 C 0.183 3.817 11 C -0.123 4.123 12 C -0.094 4.094 13 H 0.092 0.908 14 C 0.148 3.852 15 N -0.712 5.712 16 C 0.595 3.405 17 O -0.591 6.591 18 C -0.336 4.336 19 C 0.111 3.889 20 N -0.301 5.301 21 N -0.394 5.394 22 C 0.332 3.668 23 O -0.293 6.293 24 C 0.029 3.971 25 C -0.166 4.166 26 C 0.113 3.887 27 C 0.138 3.862 28 H 0.246 0.754 29 H 0.002 0.998 30 H 0.014 0.986 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.411 0.589 36 H 0.225 0.775 37 H 0.087 0.913 38 H 0.144 0.856 39 H 0.155 0.845 40 H 0.081 0.919 41 H 0.113 0.887 42 H 0.119 0.881 43 H 0.052 0.948 44 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.150 -28.054 -4.953 31.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.263 4.263 3 Si 0.807 3.193 4 H -0.211 1.211 5 H -0.224 1.224 6 H -0.194 1.194 7 C -0.368 4.368 8 H 0.102 0.898 9 N -0.355 5.355 10 C 0.058 3.942 11 C -0.162 4.162 12 C -0.114 4.114 13 H 0.111 0.889 14 C 0.024 3.976 15 N -0.364 5.364 16 C 0.385 3.615 17 O -0.473 6.473 18 C -0.351 4.351 19 C -0.078 4.078 20 N -0.122 5.122 21 N -0.189 5.189 22 C 0.157 3.843 23 O -0.197 6.197 24 C -0.045 4.045 25 C -0.204 4.204 26 C -0.005 4.005 27 C 0.013 3.987 28 H 0.055 0.945 29 H 0.021 0.979 30 H 0.032 0.968 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.248 0.752 36 H 0.241 0.759 37 H 0.105 0.895 38 H 0.162 0.838 39 H 0.173 0.827 40 H 0.100 0.900 41 H 0.131 0.869 42 H 0.137 0.863 43 H 0.071 0.929 44 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 13.608 -28.661 -4.858 32.098 hybrid contribution -0.352 1.592 0.376 1.673 sum 13.256 -27.069 -4.483 30.472 Atomic orbital electron populations 1.70200 1.06336 1.25149 1.58569 1.25672 0.96625 1.01099 1.02900 0.85071 0.77587 0.79127 0.77517 1.21096 1.22374 1.19395 1.19490 0.91077 0.83738 1.42525 0.89780 1.44824 1.02495 1.01267 1.86953 1.20914 0.83882 0.91779 0.97609 1.22724 0.97286 0.94983 1.01205 1.22416 0.95927 0.92198 1.00844 0.88933 1.21120 0.86139 0.92294 0.98018 1.45620 1.24859 1.13179 1.52719 1.17187 0.83889 0.81317 0.79136 1.90762 1.56109 1.59763 1.40647 1.19176 1.03108 0.95001 1.17831 1.24463 0.89142 1.00554 0.93599 1.77030 1.23805 0.90629 1.20764 1.49380 1.16789 1.13214 1.39502 1.19857 0.85728 0.90087 0.88619 1.86733 1.59035 1.16608 1.57362 1.23712 0.94039 0.81084 1.05689 1.22696 0.95419 1.03778 0.98511 1.22511 0.95739 0.80331 1.01908 1.21757 0.95480 0.84294 0.97209 0.94522 0.97944 0.96810 0.89585 0.91230 0.92593 0.90893 0.75229 0.75916 0.89513 0.83825 0.82723 0.89984 0.86925 0.86284 0.92931 0.96605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.35 10.31 21.65 0.22 -58.13 16 2 C -0.07 -4.06 5.49 84.86 0.47 -3.59 16 3 Si 0.98 46.26 29.55 68.60 2.03 48.29 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.24 -13.49 10.28 84.03 0.86 -12.63 16 8 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 9 N -0.63 -32.47 3.39 -691.93 -2.35 -34.82 16 10 C 0.18 9.17 5.37 86.73 0.47 9.64 16 11 C -0.12 -4.47 6.42 31.78 0.20 -4.26 16 12 C -0.09 -3.03 3.11 -9.40 -0.03 -3.06 16 13 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 14 C 0.15 4.29 5.12 86.38 0.44 4.73 16 15 N -0.71 -18.91 5.40 -466.86 -2.52 -21.43 16 16 C 0.60 18.44 7.80 86.52 0.67 19.11 16 17 O -0.59 -22.91 16.53 -1.99 -0.03 -22.94 16 18 C -0.34 -8.90 6.14 -20.15 -0.12 -9.02 16 19 C 0.11 2.33 11.51 85.74 0.99 3.32 16 20 N -0.30 -6.57 12.54 -55.93 -0.70 -7.27 16 21 N -0.39 -7.52 4.04 -456.72 -1.85 -9.37 16 22 C 0.33 8.10 7.50 84.18 0.63 8.73 16 23 O -0.29 -6.79 10.18 -85.39 -0.87 -7.66 16 24 C 0.03 0.27 7.02 72.07 0.51 0.78 16 25 C -0.17 -0.72 6.16 30.84 0.19 -0.53 16 26 C 0.11 0.92 7.41 86.49 0.64 1.56 16 27 C 0.14 5.43 6.41 86.86 0.56 5.99 16 28 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 29 H 0.00 0.13 7.51 -2.39 -0.02 0.11 16 30 H 0.01 0.76 7.38 -2.39 -0.02 0.75 16 31 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.07 2.40 8.04 -2.39 -0.02 2.38 16 33 H 0.06 1.78 8.10 -2.39 -0.02 1.76 16 34 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.41 8.83 7.29 -92.71 -0.68 8.15 16 36 H 0.22 3.09 7.51 -2.91 -0.02 3.07 16 37 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.14 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.15 -0.59 8.14 -2.38 -0.02 -0.61 16 40 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.11 0.48 8.14 -2.38 -0.02 0.46 16 42 H 0.12 0.67 8.14 -2.39 -0.02 0.66 16 43 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.02 0.66 8.01 -2.39 -0.02 0.64 16 Total: -1.00 -83.59 360.38 0.75 -82.84 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 0.34 Total: 9.71 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: 6.47 Total: 20.77 kcal Atomic # 7 Polarization: -123.82 SS G_CDS: -7.19 Total: -131.01 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.90 Total: -30.60 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -83.59 0.75 -82.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028662221.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.361 kcal (2) G-P(sol) polarization free energy of solvation -83.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds