Wall clock time and date at job start Tue Mar 31 2020 12:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86809 * 119.99885 * 2 1 4 4 H 1.48500 * 109.47020 * 239.99407 * 3 2 1 5 5 H 1.48497 * 109.46880 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46806 * 119.99997 * 3 2 1 7 7 C 1.38813 * 120.00583 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00526 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99244 * 0.02562 * 7 2 1 10 10 C 1.47414 * 125.65194 * 0.02562 * 9 7 2 11 11 C 1.54912 * 104.83325 * 155.83586 * 10 9 7 12 12 C 1.55152 * 101.58242 * 37.00951 * 11 10 9 13 13 H 1.09003 * 110.71693 * 83.03601 * 12 11 10 14 14 C 1.52994 * 110.72175 * 206.13708 * 12 11 10 15 15 N 1.46504 * 109.47213 * 185.00165 * 14 12 11 16 16 C 1.34780 * 120.00009 * 179.97438 * 15 14 12 17 17 O 1.21565 * 120.00036 * 359.97438 * 16 15 14 18 18 C 1.47715 * 119.99609 * 179.97438 * 16 15 14 19 19 C 1.41296 * 125.95024 * 179.97438 * 18 16 15 20 20 C 1.34858 * 107.71048 * 179.97438 * 19 18 16 21 21 N 1.36395 * 107.92052 * 0.09073 * 20 19 18 22 22 N 1.32118 * 125.95810 * 0.24618 * 18 16 15 23 23 C 1.46726 * 123.62271 * 179.82435 * 21 20 19 24 24 C 1.53529 * 107.96239 * 343.06395 * 23 21 20 25 25 C 1.53228 * 109.30573 * 47.26100 * 24 23 21 26 26 O 1.36027 * 128.63601 * 180.20140 * 20 19 18 27 27 C 1.47025 * 125.64502 * 179.97438 * 9 7 2 28 28 H 0.97000 * 120.00652 * 0.02562 * 1 2 3 29 29 H 1.09008 * 110.36857 * 37.00065 * 10 9 7 30 30 H 1.08996 * 110.36758 * 274.67390 * 10 9 7 31 31 H 1.08999 * 111.00255 * 278.93068 * 11 10 9 32 32 H 1.08999 * 111.03848 * 155.10279 * 11 10 9 33 33 H 1.08994 * 109.47252 * 64.99715 * 14 12 11 34 34 H 1.09002 * 109.46927 * 304.99639 * 14 12 11 35 35 H 0.97002 * 120.00037 * 359.97438 * 15 14 12 36 36 H 1.08008 * 126.14442 * 359.97438 * 19 18 16 37 37 H 1.09000 * 109.76150 * 102.68138 * 23 21 20 38 38 H 1.08999 * 109.75862 * 223.44501 * 23 21 20 39 39 H 1.08993 * 109.49427 * 287.30986 * 24 23 21 40 40 H 1.08999 * 109.52011 * 167.22778 * 24 23 21 41 41 H 1.08998 * 109.50007 * 175.46325 * 25 24 23 42 42 H 1.08998 * 109.53784 * 55.36459 * 25 24 23 43 43 H 1.09000 * 109.87870 * 61.67940 * 27 9 7 44 44 H 1.09001 * 109.88594 * 300.51312 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1415 -2.5332 -0.0005 11 6 -0.4011 -3.9321 -0.6131 12 6 0.7785 -4.7524 -0.0275 13 1 0.5440 -5.1010 0.9783 14 6 1.1239 -5.9309 -0.9400 15 7 2.1571 -6.7533 -0.3055 16 6 2.6205 -7.8539 -0.9305 17 8 2.1807 -8.1644 -2.0205 18 6 3.6626 -8.6827 -0.2910 19 6 4.2357 -9.8564 -0.8300 20 6 5.1442 -10.3133 0.0557 21 7 5.1521 -9.4655 1.1241 22 7 4.2177 -8.4586 0.8868 23 6 6.0170 -9.6432 2.2960 24 6 6.5318 -11.0896 2.2895 25 6 7.0409 -11.4398 0.8873 26 8 5.9428 -11.4106 -0.0364 27 6 1.9318 -3.7275 0.0005 28 1 -0.4851 0.8400 -0.0004 29 1 -0.5989 -1.7586 -0.6163 30 1 -0.5280 -2.4872 1.0176 31 1 -0.3508 -3.8975 -1.7014 32 1 -1.3588 -4.3331 -0.2811 33 1 1.4934 -5.5555 -1.8942 34 1 0.2317 -6.5342 -1.1078 35 1 2.5077 -6.5058 0.5644 36 1 3.9902 -10.3067 -1.7805 37 1 6.8582 -8.9523 2.2413 38 1 5.4464 -9.4590 3.2063 39 1 5.7211 -11.7654 2.5616 40 1 7.3456 -11.1898 3.0077 41 1 7.4806 -12.4371 0.8985 42 1 7.7937 -10.7136 0.5809 43 1 2.5276 -3.8646 0.9029 44 1 2.5588 -3.8506 -0.8825 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028681373.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:41 Heat of formation + Delta-G solvation = 37.156884 kcal Electronic energy + Delta-G solvation = -26281.600254 eV Core-core repulsion = 22430.014044 eV Total energy + Delta-G solvation = -3851.586210 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.11319 -39.69981 -38.60755 -37.52996 -35.13268 -34.62940 -32.53310 -31.38489 -29.85125 -29.65912 -28.28844 -26.94085 -25.57188 -24.36679 -23.52133 -22.37756 -20.56191 -20.30006 -19.84766 -19.53673 -18.50204 -17.11767 -16.79173 -16.53547 -16.11903 -16.00527 -15.42745 -15.27988 -15.16359 -14.82778 -14.58909 -14.28669 -13.90772 -13.63874 -13.41562 -13.01904 -12.73115 -12.44910 -12.16327 -11.88446 -11.73688 -11.72709 -11.66062 -11.45718 -11.09921 -10.92465 -10.76449 -10.43246 -10.17163 -10.06440 -9.93990 -9.74416 -9.48744 -9.47829 -8.90963 -8.74391 -8.61351 -6.79381 -5.61882 -3.03291 1.15132 1.76963 1.93500 2.53491 3.25990 3.37441 3.42779 3.46708 3.48218 3.61444 3.83358 4.17147 4.23828 4.50539 4.52535 4.62745 4.76809 4.87878 5.07296 5.10988 5.15121 5.25363 5.31181 5.45818 5.56728 5.59767 5.66894 5.75278 5.94218 6.09853 6.14055 6.17646 6.40244 6.46318 6.61907 6.63891 6.77613 6.86599 6.96822 7.07533 7.55468 7.61847 7.66209 7.89365 8.21486 8.40332 9.25922 9.86871 10.52067 11.42080 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019777 B = 0.002377 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.479794 B =11775.946557 C =12683.709069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.012 4.012 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.222 4.222 8 H 0.076 0.924 9 N -0.605 5.605 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.077 0.923 14 C 0.131 3.869 15 N -0.708 5.708 16 C 0.598 3.402 17 O -0.528 6.528 18 C 0.055 3.945 19 C -0.226 4.226 20 C 0.261 3.739 21 N -0.394 5.394 22 N -0.242 5.242 23 C 0.127 3.873 24 C -0.175 4.175 25 C 0.048 3.952 26 O -0.286 6.286 27 C 0.141 3.859 28 H 0.252 0.748 29 H 0.107 0.893 30 H 0.012 0.988 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.408 0.592 36 H 0.166 0.834 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.112 0.888 41 H 0.121 0.879 42 H 0.074 0.926 43 H 0.019 0.981 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.266 -24.701 5.279 28.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.350 4.350 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.134 4.134 13 H 0.095 0.905 14 C 0.008 3.992 15 N -0.359 5.359 16 C 0.381 3.619 17 O -0.402 6.402 18 C -0.112 4.112 19 C -0.256 4.256 20 C 0.095 3.905 21 N -0.191 5.191 22 N -0.072 5.072 23 C 0.006 3.994 24 C -0.214 4.214 25 C -0.027 4.027 26 O -0.193 6.193 27 C 0.015 3.985 28 H 0.063 0.937 29 H 0.125 0.875 30 H 0.030 0.970 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.243 0.757 36 H 0.184 0.816 37 H 0.111 0.889 38 H 0.124 0.876 39 H 0.108 0.892 40 H 0.130 0.870 41 H 0.139 0.861 42 H 0.092 0.908 43 H 0.037 0.963 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 12.013 -24.163 5.408 27.521 hybrid contribution 0.950 0.409 0.219 1.057 sum 12.963 -23.754 5.627 27.640 Atomic orbital electron populations 1.69779 1.04871 1.24845 1.57684 1.24782 0.95729 0.97688 1.02534 0.86154 0.78397 0.83090 0.77866 1.21172 1.21573 1.21277 1.19036 0.90468 0.82529 1.42995 0.90614 1.44501 1.02000 0.99732 1.86848 1.21935 0.84667 0.92536 0.98175 1.23008 0.95495 0.98547 1.00364 1.22447 0.98326 0.93942 0.98672 0.90481 1.21558 0.89967 0.91019 0.96631 1.45969 1.41122 1.25575 1.23246 1.16844 0.80391 0.80238 0.84471 1.90807 1.58553 1.70993 1.19863 1.22035 0.99077 0.96806 0.93301 1.20209 1.03560 0.99131 1.02704 1.19430 0.95357 0.86521 0.89174 1.49302 1.32960 1.20914 1.15961 1.77609 1.04251 1.08700 1.16630 1.21996 0.93296 0.97261 0.86811 1.22649 1.03885 0.95914 0.98917 1.23131 0.87236 1.04909 0.87415 1.86663 1.39113 1.36019 1.57512 1.21344 0.93466 0.85888 0.97821 0.93699 0.87524 0.97031 0.91757 0.92083 0.90813 0.91218 0.75675 0.81623 0.88919 0.87645 0.89165 0.86997 0.86147 0.90777 0.96328 0.95717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.17 10.09 55.49 0.56 -26.61 16 2 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 3 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.22 -6.29 10.27 -15.06 -0.15 -6.45 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.60 -15.73 3.39 -170.08 -0.58 -16.30 16 10 C 0.15 3.70 5.89 -2.53 -0.01 3.69 16 11 C -0.13 -2.54 6.53 -24.58 -0.16 -2.70 16 12 C -0.11 -1.97 2.96 -88.79 -0.26 -2.23 16 13 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 14 C 0.13 2.02 5.02 -4.04 -0.02 2.00 16 15 N -0.71 -10.33 5.47 -61.29 -0.34 -10.66 16 16 C 0.60 9.35 7.83 -12.39 -0.10 9.25 16 17 O -0.53 -9.62 16.90 5.31 0.09 -9.53 16 18 C 0.06 0.78 7.10 -82.71 -0.59 0.20 16 19 C -0.23 -2.94 10.58 -39.62 -0.42 -3.36 16 20 C 0.26 2.91 7.57 -16.72 -0.13 2.79 16 21 N -0.39 -4.13 4.08 -60.93 -0.25 -4.37 16 22 N -0.24 -3.17 12.32 33.43 0.41 -2.75 16 23 C 0.13 0.72 7.41 -3.64 -0.03 0.69 16 24 C -0.18 -0.54 6.16 -26.34 -0.16 -0.70 16 25 C 0.05 0.21 7.00 37.28 0.26 0.47 16 26 O -0.29 -2.57 10.65 -19.83 -0.21 -2.79 16 27 C 0.14 2.96 6.75 -3.06 -0.02 2.94 16 28 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.11 2.93 5.87 -51.92 -0.31 2.62 16 30 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 1.20 8.05 -51.93 -0.42 0.78 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.41 5.52 8.16 -40.82 -0.33 5.19 16 36 H 0.17 2.02 8.06 -52.48 -0.42 1.60 16 37 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.11 0.01 8.14 -51.93 -0.42 -0.41 16 41 H 0.12 0.22 8.14 -51.93 -0.42 -0.21 16 42 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.02 0.53 7.68 -51.93 -0.40 0.13 16 LS Contribution 361.79 15.07 5.45 5.45 Total: -1.00 -34.76 361.79 -8.26 -43.02 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -6.49 Total: 1.09 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -1.89 Total: 6.16 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: -0.19 Total: -60.70 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -0.12 Total: -12.32 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.76 -8.26 -43.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028681373.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.176 kcal (2) G-P(sol) polarization free energy of solvation -34.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds