Wall clock time and date at job start Tue Mar 31 2020 12:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86809 * 119.99885 * 2 1 4 4 H 1.48500 * 109.47020 * 239.99407 * 3 2 1 5 5 H 1.48497 * 109.46880 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46806 * 119.99997 * 3 2 1 7 7 C 1.38813 * 120.00583 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00526 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99244 * 0.02562 * 7 2 1 10 10 C 1.47414 * 125.65194 * 0.02562 * 9 7 2 11 11 C 1.54912 * 104.83325 * 155.83586 * 10 9 7 12 12 C 1.55152 * 101.58242 * 37.00951 * 11 10 9 13 13 H 1.09003 * 110.71693 * 83.03601 * 12 11 10 14 14 C 1.52994 * 110.72175 * 206.13708 * 12 11 10 15 15 N 1.46504 * 109.47213 * 185.00165 * 14 12 11 16 16 C 1.34780 * 120.00009 * 179.97438 * 15 14 12 17 17 O 1.21565 * 120.00036 * 359.97438 * 16 15 14 18 18 C 1.47715 * 119.99609 * 179.97438 * 16 15 14 19 19 C 1.41296 * 125.95024 * 179.97438 * 18 16 15 20 20 C 1.34858 * 107.71048 * 179.97438 * 19 18 16 21 21 N 1.36395 * 107.92052 * 0.09073 * 20 19 18 22 22 N 1.32118 * 125.95810 * 0.24618 * 18 16 15 23 23 C 1.46726 * 123.62271 * 179.82435 * 21 20 19 24 24 C 1.53529 * 107.96239 * 343.06395 * 23 21 20 25 25 C 1.53228 * 109.30573 * 47.26100 * 24 23 21 26 26 O 1.36027 * 128.63601 * 180.20140 * 20 19 18 27 27 C 1.47025 * 125.64502 * 179.97438 * 9 7 2 28 28 H 0.97000 * 120.00652 * 0.02562 * 1 2 3 29 29 H 1.09008 * 110.36857 * 37.00065 * 10 9 7 30 30 H 1.08996 * 110.36758 * 274.67390 * 10 9 7 31 31 H 1.08999 * 111.00255 * 278.93068 * 11 10 9 32 32 H 1.08999 * 111.03848 * 155.10279 * 11 10 9 33 33 H 1.08994 * 109.47252 * 64.99715 * 14 12 11 34 34 H 1.09002 * 109.46927 * 304.99639 * 14 12 11 35 35 H 0.97002 * 120.00037 * 359.97438 * 15 14 12 36 36 H 1.08008 * 126.14442 * 359.97438 * 19 18 16 37 37 H 1.09000 * 109.76150 * 102.68138 * 23 21 20 38 38 H 1.08999 * 109.75862 * 223.44501 * 23 21 20 39 39 H 1.08993 * 109.49427 * 287.30986 * 24 23 21 40 40 H 1.08999 * 109.52011 * 167.22778 * 24 23 21 41 41 H 1.08998 * 109.50007 * 175.46325 * 25 24 23 42 42 H 1.08998 * 109.53784 * 55.36459 * 25 24 23 43 43 H 1.09000 * 109.87870 * 61.67940 * 27 9 7 44 44 H 1.09001 * 109.88594 * 300.51312 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1415 -2.5332 -0.0005 11 6 -0.4011 -3.9321 -0.6131 12 6 0.7785 -4.7524 -0.0275 13 1 0.5440 -5.1010 0.9783 14 6 1.1239 -5.9309 -0.9400 15 7 2.1571 -6.7533 -0.3055 16 6 2.6205 -7.8539 -0.9305 17 8 2.1807 -8.1644 -2.0205 18 6 3.6626 -8.6827 -0.2910 19 6 4.2357 -9.8564 -0.8300 20 6 5.1442 -10.3133 0.0557 21 7 5.1521 -9.4655 1.1241 22 7 4.2177 -8.4586 0.8868 23 6 6.0170 -9.6432 2.2960 24 6 6.5318 -11.0896 2.2895 25 6 7.0409 -11.4398 0.8873 26 8 5.9428 -11.4106 -0.0364 27 6 1.9318 -3.7275 0.0005 28 1 -0.4851 0.8400 -0.0004 29 1 -0.5989 -1.7586 -0.6163 30 1 -0.5280 -2.4872 1.0176 31 1 -0.3508 -3.8975 -1.7014 32 1 -1.3588 -4.3331 -0.2811 33 1 1.4934 -5.5555 -1.8942 34 1 0.2317 -6.5342 -1.1078 35 1 2.5077 -6.5058 0.5644 36 1 3.9902 -10.3067 -1.7805 37 1 6.8582 -8.9523 2.2413 38 1 5.4464 -9.4590 3.2063 39 1 5.7211 -11.7654 2.5616 40 1 7.3456 -11.1898 3.0077 41 1 7.4806 -12.4371 0.8985 42 1 7.7937 -10.7136 0.5809 43 1 2.5276 -3.8646 0.9029 44 1 2.5588 -3.8506 -0.8825 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028681373.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:40 Heat of formation + Delta-G solvation = 11.389139 kcal Electronic energy + Delta-G solvation = -26282.717627 eV Core-core repulsion = 22430.014044 eV Total energy + Delta-G solvation = -3852.703583 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.91931 -40.82091 -39.52617 -39.07348 -36.11685 -35.67323 -34.35079 -32.28514 -31.46631 -30.59849 -29.87778 -27.78985 -27.10344 -25.67794 -24.54130 -23.43074 -22.11141 -21.44835 -20.99163 -20.68896 -19.43356 -18.81630 -17.82627 -17.47587 -17.22971 -16.85106 -16.64755 -16.50915 -16.22659 -15.90049 -15.73946 -15.55767 -15.08463 -14.87897 -14.33217 -14.28384 -14.25690 -13.53039 -13.46926 -13.32867 -13.13324 -12.81774 -12.65794 -12.64265 -12.43229 -12.13374 -12.04588 -11.92585 -11.88432 -11.82397 -11.59326 -11.43765 -11.21114 -10.72499 -10.38045 -10.08511 -9.60615 -8.87037 -7.76423 -5.20650 0.16575 1.00726 1.05004 1.46252 1.49706 1.56128 1.78636 2.23939 2.27124 2.50307 3.01835 3.32516 3.50485 3.56199 3.64612 3.80612 3.95028 3.97677 3.98689 4.08087 4.19237 4.29758 4.43265 4.46716 4.53287 4.58504 4.67389 4.69493 4.71946 4.80716 4.91897 4.92502 5.05419 5.06102 5.15367 5.22451 5.30901 5.40900 5.48323 5.68487 5.84191 6.11758 6.16580 6.33343 6.48890 7.02958 7.12433 7.80094 8.43782 9.25270 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019777 B = 0.002377 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.479794 B =11775.946557 C =12683.709069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.068 4.068 3 Si 0.980 3.020 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.241 4.241 8 H 0.078 0.922 9 N -0.628 5.628 10 C 0.151 3.849 11 C -0.121 4.121 12 C -0.094 4.094 13 H 0.095 0.905 14 C 0.142 3.858 15 N -0.701 5.701 16 C 0.600 3.400 17 O -0.560 6.560 18 C 0.037 3.963 19 C -0.253 4.253 20 C 0.271 3.729 21 N -0.385 5.385 22 N -0.255 5.255 23 C 0.110 3.890 24 C -0.164 4.164 25 C 0.035 3.965 26 O -0.298 6.298 27 C 0.137 3.863 28 H 0.247 0.753 29 H 0.072 0.928 30 H -0.009 1.009 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.414 0.586 36 H 0.163 0.837 37 H 0.109 0.891 38 H 0.116 0.884 39 H 0.085 0.915 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.082 0.918 43 H 0.024 0.976 44 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.143 -26.476 6.649 30.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.260 4.260 3 Si 0.808 3.192 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.370 4.370 8 H 0.096 0.904 9 N -0.354 5.354 10 C 0.026 3.974 11 C -0.160 4.160 12 C -0.113 4.113 13 H 0.114 0.886 14 C 0.019 3.981 15 N -0.352 5.352 16 C 0.384 3.616 17 O -0.437 6.437 18 C -0.129 4.129 19 C -0.283 4.283 20 C 0.104 3.896 21 N -0.184 5.184 22 N -0.086 5.086 23 C -0.008 4.008 24 C -0.202 4.202 25 C -0.039 4.039 26 O -0.205 6.205 27 C 0.012 3.988 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.009 0.991 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.251 0.749 36 H 0.180 0.820 37 H 0.127 0.873 38 H 0.134 0.866 39 H 0.104 0.896 40 H 0.169 0.831 41 H 0.168 0.832 42 H 0.100 0.900 43 H 0.042 0.958 44 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 13.925 -25.966 6.810 30.241 hybrid contribution 0.510 0.875 -0.117 1.019 sum 14.434 -25.092 6.692 29.711 Atomic orbital electron populations 1.70038 1.06147 1.25115 1.58501 1.25636 0.96684 1.00965 1.02719 0.85126 0.77140 0.78759 0.78139 1.20432 1.21788 1.20396 1.19409 0.90948 0.83949 1.42731 0.90443 1.44824 1.02904 1.00885 1.86821 1.21751 0.83944 0.94989 0.96678 1.22852 0.97654 0.95292 1.00183 1.22284 0.95845 0.93229 0.99974 0.88627 1.21368 0.90744 0.90544 0.95493 1.45863 1.40809 1.25188 1.23348 1.17028 0.80344 0.80208 0.84036 1.90779 1.59798 1.71865 1.21245 1.21771 0.99647 0.97383 0.94120 1.20292 1.04911 0.99601 1.03496 1.19356 0.94803 0.86716 0.88736 1.49691 1.32213 1.19689 1.16803 1.77506 1.05069 1.09900 1.16161 1.22554 0.93220 0.99588 0.85473 1.22677 1.04859 0.93687 0.98969 1.23603 0.85974 1.07065 0.87259 1.86679 1.39971 1.34772 1.59068 1.21501 0.94791 0.84841 0.97652 0.94283 0.90968 0.99144 0.91615 0.88985 0.92062 0.89704 0.74942 0.81958 0.87335 0.86619 0.89591 0.83105 0.83202 0.90006 0.95788 0.96163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.28 10.09 21.65 0.22 -57.06 16 2 C -0.07 -3.90 5.49 84.86 0.47 -3.44 16 3 Si 0.98 46.38 29.55 68.60 2.03 48.41 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.24 -13.88 10.27 84.03 0.86 -13.02 16 8 H 0.08 4.29 7.83 -2.92 -0.02 4.26 16 9 N -0.63 -33.09 3.39 -692.00 -2.35 -35.44 16 10 C 0.15 7.52 5.89 86.86 0.51 8.03 16 11 C -0.12 -4.41 6.53 31.99 0.21 -4.20 16 12 C -0.09 -3.09 2.96 -9.61 -0.03 -3.12 16 13 H 0.10 2.84 8.14 -2.39 -0.02 2.83 16 14 C 0.14 4.19 5.02 86.38 0.43 4.62 16 15 N -0.70 -19.89 5.47 -466.10 -2.55 -22.43 16 16 C 0.60 18.78 7.83 86.75 0.68 19.46 16 17 O -0.56 -20.68 16.90 -3.92 -0.07 -20.74 16 18 C 0.04 1.05 7.10 42.36 0.30 1.35 16 19 C -0.25 -6.64 10.58 22.25 0.24 -6.40 16 20 C 0.27 5.80 7.57 83.21 0.63 6.43 16 21 N -0.39 -7.49 4.08 -457.17 -1.87 -9.36 16 22 N -0.25 -6.49 12.32 -48.15 -0.59 -7.08 16 23 C 0.11 0.94 7.41 86.51 0.64 1.58 16 24 C -0.16 -0.42 6.16 30.85 0.19 -0.23 16 25 C 0.03 0.19 7.00 72.06 0.50 0.70 16 26 O -0.30 -4.85 10.65 -93.86 -1.00 -5.85 16 27 C 0.14 5.71 6.75 86.73 0.59 6.30 16 28 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 29 H 0.07 4.11 5.87 -2.38 -0.01 4.09 16 30 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 31 H 0.07 2.39 8.05 -2.39 -0.02 2.37 16 32 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 33 H 0.06 2.00 7.93 -2.39 -0.02 1.98 16 34 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.41 10.76 8.16 -92.71 -0.76 10.00 16 36 H 0.16 4.15 8.06 -2.91 -0.02 4.13 16 37 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.15 -0.73 8.14 -2.39 -0.02 -0.75 16 41 H 0.15 -0.05 8.14 -2.39 -0.02 -0.07 16 42 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.02 0.87 7.68 -2.39 -0.02 0.85 16 Total: -1.00 -77.86 361.79 0.31 -77.56 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.26 Total: 13.93 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: 6.22 Total: 18.07 kcal Atomic # 7 Polarization: -124.23 SS G_CDS: -7.14 Total: -131.37 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -1.07 Total: -26.59 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -77.86 0.31 -77.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028681373.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.947 kcal (2) G-P(sol) polarization free energy of solvation -77.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds