Wall clock time and date at job start Tue Mar 31 2020 12:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99715 * 2 1 4 4 H 1.48508 * 109.46915 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47304 * 299.99669 * 3 2 1 6 6 H 1.48497 * 109.47566 * 59.99745 * 3 2 1 7 7 C 1.38814 * 120.00307 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00048 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00153 * 0.02562 * 7 2 1 10 10 C 1.47578 * 134.49816 * 179.97438 * 9 7 2 11 11 C 1.53946 * 86.12106 * 155.35481 * 10 9 7 12 12 N 1.46502 * 113.73915 * 137.95183 * 11 10 9 13 13 C 1.34777 * 119.99818 * 156.92898 * 12 11 10 14 14 O 1.21576 * 119.99948 * 0.02562 * 13 12 11 15 15 C 1.47709 * 120.00121 * 180.02562 * 13 12 11 16 16 C 1.41494 * 126.52007 * 179.97438 * 15 13 12 17 17 C 1.35367 * 105.50576 * 179.97438 * 16 15 13 18 18 N 1.35031 * 107.22543 * 0.23337 * 17 16 15 19 19 C 1.46500 * 124.88418 * 179.76759 * 18 17 16 20 20 C 1.53184 * 109.54307 * 34.55346 * 19 18 17 21 21 C 1.53093 * 109.16201 * 183.15628 * 20 19 18 22 22 O 1.42899 * 109.41581 * 57.60564 * 21 20 19 23 23 C 1.42904 * 114.10032 * 298.83846 * 22 21 20 24 24 C 1.53091 * 109.41147 * 61.16201 * 23 22 21 25 25 N 1.28472 * 110.23159 * 359.60437 * 18 17 16 26 26 C 1.47819 * 134.45284 * 359.86088 * 9 7 2 27 27 H 0.96999 * 120.00115 * 0.02562 * 1 2 3 28 28 H 1.09003 * 113.76477 * 41.05389 * 10 9 7 29 29 H 1.09002 * 113.76985 * 269.66271 * 10 9 7 30 30 H 1.09000 * 113.74489 * 269.15628 * 11 10 9 31 31 H 0.97003 * 120.00221 * 336.92728 * 12 11 10 32 32 H 1.08008 * 127.24760 * 359.94878 * 16 15 13 33 33 H 1.08002 * 126.38433 * 179.97438 * 17 16 15 34 34 H 1.09004 * 109.54496 * 154.81541 * 19 18 17 35 35 H 1.09003 * 109.51528 * 303.05678 * 20 19 18 36 36 H 1.08996 * 109.52294 * 63.24816 * 20 19 18 37 37 H 1.09006 * 109.47698 * 297.62234 * 21 20 19 38 38 H 1.09001 * 109.48034 * 177.59056 * 21 20 19 39 39 H 1.08997 * 109.48255 * 301.18414 * 23 22 21 40 40 H 1.08996 * 109.48098 * 181.14088 * 23 22 21 41 41 H 1.08998 * 109.52177 * 182.48758 * 24 23 22 42 42 H 1.09001 * 109.57796 * 62.32677 * 24 23 22 43 43 H 1.09004 * 113.76781 * 90.38363 * 26 9 7 44 44 H 1.08999 * 113.83646 * 318.92080 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 1.7203 -3.8101 0.0005 11 6 0.3472 -4.0830 0.6410 12 7 -0.3331 -5.2614 0.0981 13 6 -1.2729 -5.8932 0.8289 14 8 -1.5565 -5.4849 1.9383 15 6 -1.9585 -7.0817 0.2818 16 6 -2.9599 -7.8467 0.9252 17 6 -3.2861 -8.8258 0.0491 18 7 -2.5178 -8.6532 -1.0478 19 6 -2.5528 -9.5065 -2.2380 20 6 -3.9856 -9.9923 -2.4783 21 6 -3.9988 -10.9455 -3.6762 22 8 -3.1089 -12.0352 -3.4260 23 6 -1.7466 -11.6453 -3.2408 24 6 -1.6428 -10.7203 -2.0254 25 7 -1.7540 -7.6309 -0.8988 26 6 -0.1056 -2.7571 0.0026 27 1 -0.4850 0.8400 -0.0004 28 1 2.5626 -4.0323 0.6557 29 1 1.8321 -4.2350 -0.9970 30 1 0.3597 -4.0639 1.7308 31 1 -0.1071 -5.5870 -0.7873 32 1 -3.3761 -7.6841 1.9085 33 1 -4.0207 -9.6028 0.2011 34 1 -2.2087 -8.9399 -3.1033 35 1 -4.3461 -10.5154 -1.5925 36 1 -4.6300 -9.1380 -2.6854 37 1 -3.6767 -10.4108 -4.5697 38 1 -5.0086 -11.3278 -3.8254 39 1 -1.3950 -11.1197 -4.1286 40 1 -1.1339 -12.5316 -3.0763 41 1 -0.6118 -10.3864 -1.9087 42 1 -1.9554 -11.2574 -1.1299 43 1 -0.5311 -2.8723 -0.9943 44 1 -0.7187 -2.1400 0.6594 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030311526.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:32 Heat of formation + Delta-G solvation = 57.952206 kcal Electronic energy + Delta-G solvation = -26289.780896 eV Core-core repulsion = 22439.096439 eV Total energy + Delta-G solvation = -3850.684457 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.84842 -39.86832 -39.17377 -37.36806 -35.20598 -33.44842 -31.91406 -31.82006 -31.10174 -30.52298 -27.49992 -25.86860 -24.77423 -24.36876 -23.72500 -22.29111 -22.14457 -20.27926 -19.80067 -19.48318 -18.10821 -16.86372 -16.76928 -16.73159 -16.38068 -15.92990 -15.65490 -15.41264 -14.92033 -14.52104 -14.38946 -13.97210 -13.85017 -13.74686 -13.66490 -13.22500 -13.01996 -12.61645 -12.15385 -12.04461 -11.84026 -11.57825 -11.41280 -11.39080 -11.12732 -10.98117 -10.85962 -10.75055 -10.38913 -10.36207 -10.01524 -9.69080 -9.49414 -9.34622 -9.13790 -8.78360 -8.34838 -6.88449 -5.74160 -3.08088 1.60806 2.10507 2.14118 3.22931 3.40997 3.45360 3.49211 3.57016 3.68601 3.74847 3.98791 4.20117 4.30479 4.44573 4.47578 4.52749 4.59342 4.76388 4.85670 4.94939 5.04573 5.06056 5.15105 5.28889 5.29919 5.35304 5.46566 5.51683 5.62511 5.63592 5.72147 6.06187 6.25957 6.34969 6.47006 6.52078 6.60003 6.62488 6.82531 7.28247 7.41186 7.59681 7.75124 7.99340 8.05131 8.60808 9.05852 9.72103 10.59298 11.42676 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024687 B = 0.002248 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.925184 B =12453.816418 C =12878.300973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.223 4.223 8 H 0.082 0.918 9 N -0.608 5.608 10 C 0.113 3.887 11 C 0.091 3.909 12 N -0.701 5.701 13 C 0.599 3.401 14 O -0.536 6.536 15 C -0.007 4.007 16 C -0.178 4.178 17 C -0.022 4.022 18 N -0.281 5.281 19 C 0.149 3.851 20 C -0.167 4.167 21 C 0.066 3.934 22 O -0.380 6.380 23 C 0.065 3.935 24 C -0.167 4.167 25 N -0.262 5.262 26 C 0.155 3.845 27 H 0.254 0.746 28 H 0.050 0.950 29 H 0.036 0.964 30 H 0.112 0.888 31 H 0.402 0.598 32 H 0.162 0.838 33 H 0.178 0.822 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.105 0.895 39 H 0.059 0.941 40 H 0.104 0.896 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.029 0.971 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.629 -27.184 -7.355 29.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.351 4.351 8 H 0.100 0.900 9 N -0.334 5.334 10 C -0.014 4.014 11 C -0.014 4.014 12 N -0.351 5.351 13 C 0.382 3.618 14 O -0.411 6.411 15 C -0.168 4.168 16 C -0.206 4.206 17 C -0.164 4.164 18 N -0.069 5.069 19 C 0.048 3.952 20 C -0.206 4.206 21 C -0.012 4.012 22 O -0.298 6.298 23 C -0.012 4.012 24 C -0.206 4.206 25 N -0.097 5.097 26 C 0.028 3.972 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.130 0.870 31 H 0.236 0.764 32 H 0.180 0.820 33 H 0.195 0.805 34 H 0.129 0.871 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.123 0.877 39 H 0.077 0.923 40 H 0.122 0.878 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.047 0.953 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.192 -26.642 -7.600 28.890 hybrid contribution 0.091 0.995 0.135 1.008 sum -8.101 -25.646 -7.465 27.912 Atomic orbital electron populations 1.69844 1.05042 1.25335 1.56271 1.24830 0.95703 0.97648 1.02282 0.86017 0.78692 0.83588 0.77263 1.20415 1.21752 1.21619 1.19029 0.90265 0.81604 1.44207 0.89993 1.45736 1.02459 0.99174 1.86069 1.22866 0.94609 0.86790 0.97104 1.23952 0.93376 0.84048 0.99975 1.46007 1.38956 1.30303 1.19860 1.16925 0.79346 0.80854 0.84639 1.90793 1.64616 1.66014 1.19641 1.22165 1.02058 1.00071 0.92509 1.21802 1.00502 0.96409 1.01865 1.22720 1.01605 1.03612 0.88493 1.45580 1.27153 1.20201 1.13952 1.21560 0.97452 0.90375 0.85787 1.22644 0.95045 1.01283 1.01598 1.22577 0.95284 0.87954 0.95345 1.87987 1.17722 1.32121 1.91982 1.22596 0.83545 0.99172 0.95918 1.22674 1.01200 0.95723 1.01009 1.73520 1.16112 1.00178 1.19905 1.22722 0.88101 0.89089 0.97266 0.93594 0.93168 0.94667 0.86993 0.76385 0.82039 0.80529 0.87120 0.89522 0.89254 0.92322 0.87672 0.92312 0.87784 0.89348 0.89910 0.95322 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.07 11.39 55.49 0.63 -27.43 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.22 -6.41 10.70 -15.06 -0.16 -6.57 16 8 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 9 N -0.61 -16.10 3.70 -177.84 -0.66 -16.76 16 10 C 0.11 2.37 8.69 -2.97 -0.03 2.34 16 11 C 0.09 1.89 4.40 -70.12 -0.31 1.58 16 12 N -0.70 -12.37 5.37 -56.31 -0.30 -12.68 16 13 C 0.60 10.93 7.82 -12.39 -0.10 10.83 16 14 O -0.54 -11.49 16.55 5.30 0.09 -11.40 16 15 C -0.01 -0.11 7.13 -82.77 -0.59 -0.70 16 16 C -0.18 -2.25 10.81 -39.37 -0.43 -2.68 16 17 C -0.02 -0.21 10.54 -17.17 -0.18 -0.39 16 18 N -0.28 -2.84 3.23 -54.64 -0.18 -3.01 16 19 C 0.15 1.00 3.16 -67.74 -0.21 0.78 16 20 C -0.17 -0.78 5.10 -26.59 -0.14 -0.92 16 21 C 0.07 0.27 6.84 37.21 0.25 0.53 16 22 O -0.38 -2.34 10.77 -35.23 -0.38 -2.72 16 23 C 0.07 0.30 6.84 37.20 0.25 0.56 16 24 C -0.17 -0.96 5.75 -26.59 -0.15 -1.11 16 25 N -0.26 -3.50 11.67 33.42 0.39 -3.11 16 26 C 0.15 3.86 7.33 -2.82 -0.02 3.84 16 27 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.04 0.69 8.11 -51.93 -0.42 0.26 16 30 H 0.11 2.47 7.51 -51.93 -0.39 2.08 16 31 H 0.40 6.28 8.44 -40.82 -0.34 5.94 16 32 H 0.16 1.90 8.06 -52.48 -0.42 1.48 16 33 H 0.18 1.03 7.08 -52.49 -0.37 0.66 16 34 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 0.38 6.90 -51.93 -0.36 0.02 16 36 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 40 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.08 2.19 7.16 -51.93 -0.37 1.82 16 LS Contribution 364.97 15.07 5.50 5.50 Total: -1.00 -35.77 364.97 -8.28 -44.05 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -6.45 Total: 2.28 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: -1.90 Total: 7.77 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: -0.12 Total: -63.00 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.29 Total: -14.12 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.77 -8.28 -44.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030311526.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.003 kcal (2) G-P(sol) polarization free energy of solvation -35.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds