Wall clock time and date at job start Tue Mar 31 2020 12:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99715 * 2 1 4 4 H 1.48508 * 109.46915 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47304 * 299.99669 * 3 2 1 6 6 H 1.48497 * 109.47566 * 59.99745 * 3 2 1 7 7 C 1.38814 * 120.00307 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00048 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00153 * 0.02562 * 7 2 1 10 10 C 1.47578 * 134.49816 * 179.97438 * 9 7 2 11 11 C 1.53946 * 86.12106 * 155.35481 * 10 9 7 12 12 N 1.46502 * 113.73915 * 137.95183 * 11 10 9 13 13 C 1.34777 * 119.99818 * 156.92898 * 12 11 10 14 14 O 1.21576 * 119.99948 * 0.02562 * 13 12 11 15 15 C 1.47709 * 120.00121 * 180.02562 * 13 12 11 16 16 C 1.41494 * 126.52007 * 179.97438 * 15 13 12 17 17 C 1.35367 * 105.50576 * 179.97438 * 16 15 13 18 18 N 1.35031 * 107.22543 * 0.23337 * 17 16 15 19 19 C 1.46500 * 124.88418 * 179.76759 * 18 17 16 20 20 C 1.53184 * 109.54307 * 34.55346 * 19 18 17 21 21 C 1.53093 * 109.16201 * 183.15628 * 20 19 18 22 22 O 1.42899 * 109.41581 * 57.60564 * 21 20 19 23 23 C 1.42904 * 114.10032 * 298.83846 * 22 21 20 24 24 C 1.53091 * 109.41147 * 61.16201 * 23 22 21 25 25 N 1.28472 * 110.23159 * 359.60437 * 18 17 16 26 26 C 1.47819 * 134.45284 * 359.86088 * 9 7 2 27 27 H 0.96999 * 120.00115 * 0.02562 * 1 2 3 28 28 H 1.09003 * 113.76477 * 41.05389 * 10 9 7 29 29 H 1.09002 * 113.76985 * 269.66271 * 10 9 7 30 30 H 1.09000 * 113.74489 * 269.15628 * 11 10 9 31 31 H 0.97003 * 120.00221 * 336.92728 * 12 11 10 32 32 H 1.08008 * 127.24760 * 359.94878 * 16 15 13 33 33 H 1.08002 * 126.38433 * 179.97438 * 17 16 15 34 34 H 1.09004 * 109.54496 * 154.81541 * 19 18 17 35 35 H 1.09003 * 109.51528 * 303.05678 * 20 19 18 36 36 H 1.08996 * 109.52294 * 63.24816 * 20 19 18 37 37 H 1.09006 * 109.47698 * 297.62234 * 21 20 19 38 38 H 1.09001 * 109.48034 * 177.59056 * 21 20 19 39 39 H 1.08997 * 109.48255 * 301.18414 * 23 22 21 40 40 H 1.08996 * 109.48098 * 181.14088 * 23 22 21 41 41 H 1.08998 * 109.52177 * 182.48758 * 24 23 22 42 42 H 1.09001 * 109.57796 * 62.32677 * 24 23 22 43 43 H 1.09004 * 113.76781 * 90.38363 * 26 9 7 44 44 H 1.08999 * 113.83646 * 318.92080 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 1.7203 -3.8101 0.0005 11 6 0.3472 -4.0830 0.6410 12 7 -0.3331 -5.2614 0.0981 13 6 -1.2729 -5.8932 0.8289 14 8 -1.5565 -5.4849 1.9383 15 6 -1.9585 -7.0817 0.2818 16 6 -2.9599 -7.8467 0.9252 17 6 -3.2861 -8.8258 0.0491 18 7 -2.5178 -8.6532 -1.0478 19 6 -2.5528 -9.5065 -2.2380 20 6 -3.9856 -9.9923 -2.4783 21 6 -3.9988 -10.9455 -3.6762 22 8 -3.1089 -12.0352 -3.4260 23 6 -1.7466 -11.6453 -3.2408 24 6 -1.6428 -10.7203 -2.0254 25 7 -1.7540 -7.6309 -0.8988 26 6 -0.1056 -2.7571 0.0026 27 1 -0.4850 0.8400 -0.0004 28 1 2.5626 -4.0323 0.6557 29 1 1.8321 -4.2350 -0.9970 30 1 0.3597 -4.0639 1.7308 31 1 -0.1071 -5.5870 -0.7873 32 1 -3.3761 -7.6841 1.9085 33 1 -4.0207 -9.6028 0.2011 34 1 -2.2087 -8.9399 -3.1033 35 1 -4.3461 -10.5154 -1.5925 36 1 -4.6300 -9.1380 -2.6854 37 1 -3.6767 -10.4108 -4.5697 38 1 -5.0086 -11.3278 -3.8254 39 1 -1.3950 -11.1197 -4.1286 40 1 -1.1339 -12.5316 -3.0763 41 1 -0.6118 -10.3864 -1.9087 42 1 -1.9554 -11.2574 -1.1299 43 1 -0.5311 -2.8723 -0.9943 44 1 -0.7187 -2.1400 0.6594 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030311526.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:31 Heat of formation + Delta-G solvation = 31.632071 kcal Electronic energy + Delta-G solvation = -26290.922223 eV Core-core repulsion = 22439.096439 eV Total energy + Delta-G solvation = -3851.825783 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.75283 -40.88371 -40.19602 -39.11068 -35.82399 -35.17660 -33.79281 -32.30375 -31.92568 -31.47272 -29.45029 -26.77804 -26.64770 -25.23648 -24.70193 -23.61490 -22.95562 -21.41437 -21.06381 -20.78441 -18.96390 -18.79933 -17.92150 -17.34059 -17.26595 -16.98541 -16.88100 -16.63611 -15.82777 -15.77784 -15.64321 -15.45568 -14.79743 -14.67806 -14.62809 -14.43161 -14.16050 -13.64765 -13.40325 -13.34355 -13.24901 -12.84723 -12.68663 -12.61847 -12.40567 -12.30469 -12.04774 -11.94078 -11.90285 -11.56892 -11.50438 -11.22495 -10.92001 -10.71705 -10.31430 -10.11338 -9.91144 -9.00229 -7.93038 -5.29276 0.50398 1.17041 1.37928 1.45106 1.47456 1.57802 2.12752 2.35908 2.49159 2.91288 3.16861 3.23685 3.37635 3.52737 3.59782 3.81570 3.83322 3.84721 3.87312 4.13404 4.19856 4.29005 4.36384 4.47734 4.48552 4.58865 4.68332 4.71136 4.72495 4.76582 4.79237 4.87253 4.94939 4.97907 5.07715 5.11456 5.20619 5.33083 5.45538 5.64416 5.84282 5.86739 6.19509 6.46822 6.86172 6.90456 7.18266 7.56133 8.48997 9.24176 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024687 B = 0.002248 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.925184 B =12453.816418 C =12878.300973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.072 4.072 3 Si 0.986 3.014 4 H -0.260 1.260 5 H -0.291 1.291 6 H -0.293 1.293 7 C -0.234 4.234 8 H 0.093 0.907 9 N -0.637 5.637 10 C 0.124 3.876 11 C 0.118 3.882 12 N -0.692 5.692 13 C 0.598 3.402 14 O -0.576 6.576 15 C -0.040 4.040 16 C -0.199 4.199 17 C 0.002 3.998 18 N -0.269 5.269 19 C 0.140 3.860 20 C -0.160 4.160 21 C 0.064 3.936 22 O -0.396 6.396 23 C 0.067 3.933 24 C -0.161 4.161 25 N -0.271 5.271 26 C 0.153 3.847 27 H 0.249 0.751 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.414 0.586 32 H 0.163 0.837 33 H 0.221 0.779 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.066 0.934 38 H 0.120 0.880 39 H 0.067 0.933 40 H 0.114 0.886 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.023 0.977 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.399 -29.582 -8.663 31.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.265 4.265 3 Si 0.814 3.186 4 H -0.184 1.184 5 H -0.218 1.218 6 H -0.220 1.220 7 C -0.362 4.362 8 H 0.110 0.890 9 N -0.365 5.365 10 C -0.002 4.002 11 C 0.012 3.988 12 N -0.342 5.342 13 C 0.385 3.615 14 O -0.454 6.454 15 C -0.198 4.198 16 C -0.227 4.227 17 C -0.140 4.140 18 N -0.058 5.058 19 C 0.040 3.960 20 C -0.199 4.199 21 C -0.013 4.013 22 O -0.315 6.315 23 C -0.011 4.011 24 C -0.199 4.199 25 N -0.108 5.108 26 C 0.027 3.973 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.251 0.749 32 H 0.181 0.819 33 H 0.237 0.763 34 H 0.130 0.870 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.138 0.862 39 H 0.085 0.915 40 H 0.132 0.868 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.041 0.959 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -7.930 -29.096 -8.942 31.455 hybrid contribution -0.035 1.573 0.466 1.640 sum -7.965 -27.523 -8.476 29.880 Atomic orbital electron populations 1.70058 1.06758 1.25715 1.57996 1.25776 0.96610 1.01373 1.02716 0.84901 0.78294 0.78786 0.76657 1.18402 1.21835 1.21985 1.19493 0.91033 0.82745 1.42936 0.88971 1.46063 1.03203 1.00854 1.86349 1.22993 0.94894 0.83613 0.98668 1.23292 0.93297 0.83362 0.98833 1.45765 1.38851 1.29239 1.20369 1.17349 0.78753 0.81392 0.84055 1.90760 1.65766 1.67423 1.21415 1.21751 1.03842 1.00179 0.94075 1.21991 1.00615 0.97283 1.02786 1.23249 1.00874 1.02965 0.86952 1.46010 1.25766 1.19122 1.14881 1.21953 0.99354 0.90182 0.84466 1.22642 0.93383 1.01528 1.02329 1.22712 0.95803 0.87524 0.95233 1.87973 1.18341 1.33171 1.92024 1.22658 0.83338 0.99416 0.95651 1.22620 1.00417 0.95290 1.01596 1.73447 1.17011 1.01233 1.19086 1.22581 0.87461 0.90925 0.96380 0.94229 0.91285 0.91908 0.88456 0.74950 0.81915 0.76297 0.86997 0.88646 0.88925 0.91605 0.86209 0.91470 0.86814 0.90116 0.90003 0.95933 0.94571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.49 11.39 21.65 0.25 -60.24 16 2 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 3 Si 0.99 46.90 29.55 68.60 2.03 48.93 16 4 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 7 C -0.23 -13.48 10.70 84.03 0.90 -12.58 16 8 H 0.09 4.98 7.83 -2.91 -0.02 4.95 16 9 N -0.64 -34.13 3.70 -716.55 -2.65 -36.78 16 10 C 0.12 5.04 8.69 86.49 0.75 5.80 16 11 C 0.12 4.98 4.40 46.75 0.21 5.18 16 12 N -0.69 -24.57 5.37 -450.33 -2.42 -26.99 16 13 C 0.60 22.33 7.82 86.75 0.68 23.01 16 14 O -0.58 -25.68 16.55 -3.95 -0.07 -25.74 16 15 C -0.04 -1.20 7.13 42.45 0.30 -0.90 16 16 C -0.20 -4.85 10.81 22.41 0.24 -4.61 16 17 C 0.00 0.04 10.54 83.54 0.88 0.92 16 18 N -0.27 -4.85 3.23 -326.79 -1.05 -5.90 16 19 C 0.14 1.51 3.16 45.11 0.14 1.66 16 20 C -0.16 -0.99 5.10 30.69 0.16 -0.83 16 21 C 0.06 0.34 6.84 72.01 0.49 0.83 16 22 O -0.40 -3.80 10.77 -148.98 -1.60 -5.40 16 23 C 0.07 0.46 6.84 72.01 0.49 0.95 16 24 C -0.16 -1.45 5.75 30.69 0.18 -1.28 16 25 N -0.27 -6.94 11.67 -48.18 -0.56 -7.50 16 26 C 0.15 7.96 7.33 86.45 0.63 8.59 16 27 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 28 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 29 H 0.06 2.28 8.11 -2.39 -0.02 2.26 16 30 H 0.10 4.44 7.51 -2.39 -0.02 4.42 16 31 H 0.41 12.71 8.44 -92.71 -0.78 11.92 16 32 H 0.16 3.80 8.06 -2.91 -0.02 3.78 16 33 H 0.22 1.58 7.08 -2.91 -0.02 1.56 16 34 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.10 0.45 6.90 -2.39 -0.02 0.43 16 36 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.07 0.26 8.14 -2.38 -0.02 0.24 16 38 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 39 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 40 H 0.11 0.55 8.14 -2.39 -0.02 0.54 16 41 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.04 2.16 7.16 -2.39 -0.02 2.14 16 Total: -1.00 -80.00 364.97 0.67 -79.33 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.24 Total: 17.34 kcal Atomic # 6 Polarization: 16.43 SS G_CDS: 6.52 Total: 22.95 kcal Atomic # 7 Polarization: -130.97 SS G_CDS: -6.44 Total: -137.42 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -1.67 Total: -31.14 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -80.00 0.67 -79.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030311526.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.961 kcal (2) G-P(sol) polarization free energy of solvation -80.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds