Wall clock time and date at job start Tue Mar 31 2020 12:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00162 * 2 1 4 4 H 1.48503 * 109.47450 * 89.99951 * 3 2 1 5 5 H 1.48503 * 109.47360 * 209.99620 * 3 2 1 6 6 H 1.48498 * 109.47360 * 329.99798 * 3 2 1 7 7 C 1.38808 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99929 * 15.17030 * 7 2 1 9 9 N 1.36939 * 120.00203 * 195.17052 * 7 2 1 10 10 C 1.47059 * 136.05734 * 7.45960 * 9 7 2 11 11 C 1.53753 * 87.88943 * 152.96018 * 10 9 7 12 12 N 1.46508 * 114.26871 * 139.79107 * 11 10 9 13 13 C 1.34773 * 120.00084 * 111.47574 * 12 11 10 14 14 O 1.21499 * 119.99906 * 359.97438 * 13 12 11 15 15 C 1.48324 * 120.00100 * 180.02562 * 13 12 11 16 16 C 1.42276 * 126.93836 * 179.97438 * 15 13 12 17 17 C 1.35315 * 103.91996 * 179.97438 * 16 15 13 18 18 C 1.50704 * 126.66915 * 179.97438 * 17 16 15 19 19 N 1.46898 * 109.47205 * 89.99660 * 18 17 16 20 20 C 1.48536 * 110.99425 * 52.60941 * 19 18 17 21 21 C 1.54943 * 103.22700 * 159.71918 * 20 19 18 22 22 C 1.54595 * 102.91772 * 322.58606 * 21 20 19 23 23 C 1.47900 * 111.00227 * 170.00262 * 19 18 17 24 24 O 1.34015 * 106.67113 * 0.02562 * 17 16 15 25 25 N 1.20905 * 111.84353 * 359.70565 * 24 17 16 26 26 C 1.47062 * 136.05593 * 187.82575 * 9 7 2 27 27 H 0.96995 * 120.00365 * 174.90835 * 1 2 3 28 28 H 1.08997 * 113.47135 * 267.69145 * 10 9 7 29 29 H 1.09007 * 113.47198 * 38.13451 * 10 9 7 30 30 H 1.09001 * 114.39615 * 272.67170 * 11 10 9 31 31 H 0.96994 * 119.99447 * 291.47492 * 12 11 10 32 32 H 1.08000 * 128.04024 * 359.97438 * 16 15 13 33 33 H 1.08990 * 109.47501 * 210.00397 * 18 17 16 34 34 H 1.09005 * 109.46744 * 330.00177 * 18 17 16 35 35 H 1.09003 * 110.66998 * 278.15168 * 20 19 18 36 36 H 1.08998 * 110.66691 * 41.28882 * 20 19 18 37 37 H 1.08998 * 110.72718 * 204.22891 * 21 20 19 38 38 H 1.08998 * 110.72370 * 80.94081 * 21 20 19 39 39 H 1.09004 * 110.30900 * 263.03735 * 22 21 20 40 40 H 1.09007 * 110.30522 * 140.87204 * 22 21 20 41 41 H 1.09006 * 109.91445 * 333.51262 * 23 19 18 42 42 H 1.09002 * 109.91590 * 94.60685 * 23 19 18 43 43 H 1.09008 * 113.47329 * 321.86486 * 26 9 7 44 44 H 1.09003 * 113.47086 * 92.30805 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 1.4001 5 1 3.5478 1.4401 -0.7000 6 1 1.4478 2.6526 -0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4984 -2.1213 -0.2438 9 7 3.3438 -1.2227 0.3109 10 6 4.3298 -0.2528 0.8107 11 6 5.1048 -1.4365 1.4125 12 7 6.5600 -1.3345 1.2775 13 6 7.3263 -1.1434 2.3696 14 8 6.8102 -1.0552 3.4660 15 6 8.7996 -1.0395 2.2330 16 6 9.7432 -0.8389 3.2787 17 6 10.9364 -0.8177 2.6408 18 6 12.2918 -0.6322 3.2731 19 7 12.8436 -1.9427 3.6417 20 6 12.8256 -2.8726 2.4836 21 6 13.8748 -3.9442 2.8730 22 6 14.9693 -3.1145 3.5827 23 6 14.2623 -1.8264 4.0434 24 8 10.6787 -0.9926 1.3374 25 7 9.4950 -1.1193 1.1259 26 6 4.4217 -2.2228 0.2849 27 1 -0.4850 -0.8367 -0.0745 28 1 4.8718 0.2629 0.0181 29 1 3.9267 0.4295 1.5592 30 1 4.7840 -1.7220 2.4143 31 1 6.9719 -1.4045 0.4022 32 1 9.5517 -0.7290 4.3359 33 1 12.9596 -0.1431 2.5641 34 1 12.1946 -0.0146 4.1661 35 1 11.8401 -3.3235 2.3675 36 1 13.1236 -2.3563 1.5711 37 1 14.2758 -4.4322 1.9847 38 1 13.4430 -4.6767 3.5551 39 1 15.7741 -2.8763 2.8871 40 1 15.3598 -3.6598 4.4420 41 1 14.7154 -0.9609 3.5599 42 1 14.3346 -1.7266 5.1265 43 1 4.0970 -3.2190 0.5854 44 1 4.9881 -2.2265 -0.6465 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030965835.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:18 Heat of formation + Delta-G solvation = 102.498663 kcal Electronic energy + Delta-G solvation = -26156.197901 eV Core-core repulsion = 22307.445124 eV Total energy + Delta-G solvation = -3848.752777 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.35028 -39.84294 -39.42254 -38.07616 -34.49521 -34.17679 -33.56009 -32.14025 -31.10863 -29.35455 -27.95120 -26.47504 -25.35584 -25.08442 -23.13892 -22.26365 -21.57436 -21.36685 -20.25765 -19.72069 -18.13217 -17.93857 -17.48334 -16.95104 -16.43219 -16.26199 -16.08609 -15.27799 -15.04036 -14.76897 -14.58701 -14.09010 -13.95940 -13.77432 -13.56552 -13.30912 -13.15242 -12.48558 -12.22634 -12.15144 -12.09240 -11.89124 -11.71692 -11.61645 -11.55267 -11.53226 -11.06767 -10.68203 -10.64378 -10.26420 -10.20135 -9.90102 -9.80808 -9.28543 -9.01821 -8.80994 -8.65780 -7.24891 -6.34403 -3.27672 0.86947 1.41413 2.54571 2.94638 3.11635 3.43366 3.47827 3.48538 3.62292 3.77400 4.03333 4.12154 4.31949 4.44255 4.57243 4.57866 4.72791 4.76062 4.78778 4.93230 5.01707 5.05750 5.10224 5.14815 5.18921 5.29609 5.34834 5.35070 5.47935 5.58398 5.62121 5.67289 5.68775 5.87438 6.12740 6.24685 6.25344 6.27749 6.32744 6.33691 6.89410 7.03711 7.44107 7.77729 8.11857 8.20555 8.93431 9.45931 10.30027 11.15751 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.035935 B = 0.002208 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.999469 B =12676.776434 C =12930.002842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.021 4.021 3 Si 1.061 2.939 4 H -0.291 1.291 5 H -0.283 1.283 6 H -0.294 1.294 7 C -0.307 4.307 8 H 0.085 0.915 9 N -0.616 5.616 10 C 0.090 3.910 11 C 0.099 3.901 12 N -0.697 5.697 13 C 0.596 3.404 14 O -0.521 6.521 15 C -0.021 4.021 16 C -0.155 4.155 17 C -0.041 4.041 18 C 0.130 3.870 19 N -0.514 5.514 20 C 0.030 3.970 21 C -0.124 4.124 22 C -0.131 4.131 23 C 0.035 3.965 24 O 0.120 5.880 25 N -0.328 5.328 26 C 0.112 3.888 27 H 0.262 0.738 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.126 0.874 31 H 0.405 0.595 32 H 0.183 0.817 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.052 0.948 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.049 0.951 42 H 0.084 0.916 43 H 0.054 0.946 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.466 -4.089 6.539 35.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.220 4.220 3 Si 0.892 3.108 4 H -0.219 1.219 5 H -0.209 1.209 6 H -0.221 1.221 7 C -0.433 4.433 8 H 0.102 0.898 9 N -0.344 5.344 10 C -0.037 4.037 11 C -0.006 4.006 12 N -0.348 5.348 13 C 0.379 3.621 14 O -0.395 6.395 15 C -0.181 4.181 16 C -0.178 4.178 17 C -0.104 4.104 18 C 0.002 3.998 19 N -0.239 5.239 20 C -0.097 4.097 21 C -0.162 4.162 22 C -0.169 4.169 23 C -0.092 4.092 24 O 0.044 5.956 25 N -0.028 5.028 26 C -0.015 4.015 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.144 0.856 31 H 0.240 0.760 32 H 0.200 0.800 33 H 0.082 0.918 34 H 0.132 0.868 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.068 0.932 42 H 0.103 0.897 43 H 0.072 0.928 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 32.847 -2.764 6.474 33.593 hybrid contribution 0.817 -1.196 -0.561 1.553 sum 33.664 -3.960 5.913 34.408 Atomic orbital electron populations 1.70901 1.05356 1.29659 1.50969 1.25793 0.96478 1.00935 0.98813 0.83790 0.74488 0.75850 0.76651 1.21899 1.20891 1.22112 1.20103 0.79961 0.96129 1.47128 0.89777 1.45892 1.03621 1.07929 1.76979 1.23163 0.90142 0.94076 0.96340 1.23615 0.75768 0.99572 1.01601 1.45900 1.08025 1.71531 1.09357 1.16899 0.82867 0.77259 0.85059 1.90816 1.72857 1.49965 1.25862 1.23646 0.97247 1.07063 0.90115 1.22444 0.89250 1.04239 1.01846 1.24132 0.98236 1.04817 0.83262 1.20746 0.87446 0.92326 0.99315 1.64985 1.17654 1.08480 1.32792 1.23318 1.00418 0.93940 0.92063 1.22477 0.95482 0.97619 1.00601 1.22406 0.97996 0.95815 1.00728 1.22912 0.86884 0.97663 1.01763 1.84776 1.19765 1.65020 1.26015 1.74180 0.89591 1.15791 1.23287 1.22674 0.89262 0.94966 0.94589 0.92734 0.93427 0.92376 0.85632 0.76002 0.79998 0.91808 0.86817 0.90024 0.92954 0.90780 0.90529 0.91299 0.90734 0.93232 0.89734 0.92765 0.94344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.50 13.70 55.49 0.76 -28.74 16 2 C -0.02 -0.62 5.50 -17.43 -0.10 -0.71 16 3 Si 1.06 27.17 25.50 -169.99 -4.34 22.84 16 4 H -0.29 -7.26 6.97 56.52 0.39 -6.87 16 5 H -0.28 -6.72 5.66 56.52 0.32 -6.40 16 6 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 7 C -0.31 -8.95 11.03 -15.06 -0.17 -9.11 16 8 H 0.08 2.55 8.06 -52.48 -0.42 2.13 16 9 N -0.62 -15.39 3.62 -184.65 -0.67 -16.06 16 10 C 0.09 1.97 5.43 -8.39 -0.05 1.92 16 11 C 0.10 1.85 4.62 -67.68 -0.31 1.54 16 12 N -0.70 -10.91 5.39 -54.28 -0.29 -11.20 16 13 C 0.60 9.56 7.85 -12.11 -0.10 9.47 16 14 O -0.52 -9.85 16.54 5.37 0.09 -9.76 16 15 C -0.02 -0.28 7.19 -82.53 -0.59 -0.88 16 16 C -0.15 -1.66 10.92 -39.07 -0.43 -2.09 16 17 C -0.04 -0.36 5.75 -35.35 -0.20 -0.56 16 18 C 0.13 0.75 5.59 -4.98 -0.03 0.72 16 19 N -0.51 -3.32 5.39 -231.89 -1.25 -4.57 16 20 C 0.03 0.20 5.43 -1.89 -0.01 0.19 16 21 C -0.12 -0.65 7.06 -24.87 -0.18 -0.83 16 22 C -0.13 -0.55 6.93 -25.38 -0.18 -0.73 16 23 C 0.04 0.16 6.69 -2.76 -0.02 0.14 16 24 O 0.12 1.25 10.98 17.25 0.19 1.44 16 25 N -0.33 -4.08 11.84 33.29 0.39 -3.69 16 26 C 0.11 2.21 8.44 -8.52 -0.07 2.14 16 27 H 0.26 8.22 8.73 -40.82 -0.36 7.86 16 28 H 0.05 1.01 7.02 -51.93 -0.36 0.65 16 29 H 0.06 1.34 6.22 -51.93 -0.32 1.02 16 30 H 0.13 2.46 7.45 -51.93 -0.39 2.08 16 31 H 0.41 5.56 8.52 -40.82 -0.35 5.22 16 32 H 0.18 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.06 0.28 7.81 -51.93 -0.41 -0.12 16 34 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.67 7.90 -51.93 -0.41 0.26 16 36 H 0.05 0.33 8.02 -51.93 -0.42 -0.09 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.05 0.18 7.57 -51.93 -0.39 -0.21 16 42 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 44 H 0.04 0.70 8.13 -51.93 -0.42 0.28 16 LS Contribution 361.63 15.07 5.45 5.45 Total: -1.00 -34.34 361.63 -8.60 -42.94 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -6.52 Total: 0.15 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -2.42 Total: 1.21 kcal Atomic # 7 Polarization: -63.20 SS G_CDS: -1.06 Total: -64.26 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.28 Total: -8.33 kcal Atomic # 14 Polarization: 27.17 SS G_CDS: -4.34 Total: 22.84 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.34 -8.60 -42.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030965835.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.435 kcal (2) G-P(sol) polarization free energy of solvation -34.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds