Wall clock time and date at job start Tue Mar 31 2020 12:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00162 * 2 1 4 4 H 1.48503 * 109.47450 * 89.99951 * 3 2 1 5 5 H 1.48503 * 109.47360 * 209.99620 * 3 2 1 6 6 H 1.48498 * 109.47360 * 329.99798 * 3 2 1 7 7 C 1.38808 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99929 * 15.17030 * 7 2 1 9 9 N 1.36939 * 120.00203 * 195.17052 * 7 2 1 10 10 C 1.47059 * 136.05734 * 7.45960 * 9 7 2 11 11 C 1.53753 * 87.88943 * 152.96018 * 10 9 7 12 12 N 1.46508 * 114.26871 * 139.79107 * 11 10 9 13 13 C 1.34773 * 120.00084 * 111.47574 * 12 11 10 14 14 O 1.21499 * 119.99906 * 359.97438 * 13 12 11 15 15 C 1.48324 * 120.00100 * 180.02562 * 13 12 11 16 16 C 1.42276 * 126.93836 * 179.97438 * 15 13 12 17 17 C 1.35315 * 103.91996 * 179.97438 * 16 15 13 18 18 C 1.50704 * 126.66915 * 179.97438 * 17 16 15 19 19 N 1.46898 * 109.47205 * 89.99660 * 18 17 16 20 20 C 1.48536 * 110.99425 * 52.60941 * 19 18 17 21 21 C 1.54943 * 103.22700 * 159.71918 * 20 19 18 22 22 C 1.54595 * 102.91772 * 322.58606 * 21 20 19 23 23 C 1.47900 * 111.00227 * 170.00262 * 19 18 17 24 24 O 1.34015 * 106.67113 * 0.02562 * 17 16 15 25 25 N 1.20905 * 111.84353 * 359.70565 * 24 17 16 26 26 C 1.47062 * 136.05593 * 187.82575 * 9 7 2 27 27 H 0.96995 * 120.00365 * 174.90835 * 1 2 3 28 28 H 1.08997 * 113.47135 * 267.69145 * 10 9 7 29 29 H 1.09007 * 113.47198 * 38.13451 * 10 9 7 30 30 H 1.09001 * 114.39615 * 272.67170 * 11 10 9 31 31 H 0.96994 * 119.99447 * 291.47492 * 12 11 10 32 32 H 1.08000 * 128.04024 * 359.97438 * 16 15 13 33 33 H 1.08990 * 109.47501 * 210.00397 * 18 17 16 34 34 H 1.09005 * 109.46744 * 330.00177 * 18 17 16 35 35 H 1.09003 * 110.66998 * 278.15168 * 20 19 18 36 36 H 1.08998 * 110.66691 * 41.28882 * 20 19 18 37 37 H 1.08998 * 110.72718 * 204.22891 * 21 20 19 38 38 H 1.08998 * 110.72370 * 80.94081 * 21 20 19 39 39 H 1.09004 * 110.30900 * 263.03735 * 22 21 20 40 40 H 1.09007 * 110.30522 * 140.87204 * 22 21 20 41 41 H 1.09006 * 109.91445 * 333.51262 * 23 19 18 42 42 H 1.09002 * 109.91590 * 94.60685 * 23 19 18 43 43 H 1.09008 * 113.47329 * 321.86486 * 26 9 7 44 44 H 1.09003 * 113.47086 * 92.30805 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 1.4001 5 1 3.5478 1.4401 -0.7000 6 1 1.4478 2.6526 -0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4984 -2.1213 -0.2438 9 7 3.3438 -1.2227 0.3109 10 6 4.3298 -0.2528 0.8107 11 6 5.1048 -1.4365 1.4125 12 7 6.5600 -1.3345 1.2775 13 6 7.3263 -1.1434 2.3696 14 8 6.8102 -1.0552 3.4660 15 6 8.7996 -1.0395 2.2330 16 6 9.7432 -0.8389 3.2787 17 6 10.9364 -0.8177 2.6408 18 6 12.2918 -0.6322 3.2731 19 7 12.8436 -1.9427 3.6417 20 6 12.8256 -2.8726 2.4836 21 6 13.8748 -3.9442 2.8730 22 6 14.9693 -3.1145 3.5827 23 6 14.2623 -1.8264 4.0434 24 8 10.6787 -0.9926 1.3374 25 7 9.4950 -1.1193 1.1259 26 6 4.4217 -2.2228 0.2849 27 1 -0.4850 -0.8367 -0.0745 28 1 4.8718 0.2629 0.0181 29 1 3.9267 0.4295 1.5592 30 1 4.7840 -1.7220 2.4143 31 1 6.9719 -1.4045 0.4022 32 1 9.5517 -0.7290 4.3359 33 1 12.9596 -0.1431 2.5641 34 1 12.1946 -0.0146 4.1661 35 1 11.8401 -3.3235 2.3675 36 1 13.1236 -2.3563 1.5711 37 1 14.2758 -4.4322 1.9847 38 1 13.4430 -4.6767 3.5551 39 1 15.7741 -2.8763 2.8871 40 1 15.3598 -3.6598 4.4420 41 1 14.7154 -0.9609 3.5599 42 1 14.3346 -1.7266 5.1265 43 1 4.0970 -3.2190 0.5854 44 1 4.9881 -2.2265 -0.6465 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030965835.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:17 Heat of formation + Delta-G solvation = 75.963137 kcal Electronic energy + Delta-G solvation = -26157.348568 eV Core-core repulsion = 22307.445124 eV Total energy + Delta-G solvation = -3849.903444 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.24309 -41.29382 -39.83973 -39.66372 -35.54398 -35.25967 -34.69694 -34.04662 -31.75476 -29.86992 -29.72610 -27.07947 -27.05527 -26.32933 -24.27154 -23.67224 -22.16675 -21.74003 -21.70474 -21.14728 -19.59462 -18.99069 -18.78959 -18.07264 -17.63433 -17.06752 -16.87288 -16.62823 -16.28221 -15.73930 -15.68902 -15.49379 -15.31518 -14.99592 -14.43943 -14.19448 -13.88617 -13.76036 -13.57943 -13.48766 -13.30299 -12.98172 -12.69173 -12.61091 -12.37333 -12.18661 -12.06976 -12.00987 -11.69762 -11.61436 -11.57950 -11.40119 -11.39186 -10.94345 -10.66725 -10.19396 -9.43551 -9.34351 -8.68166 -5.54069 -0.06360 0.55367 1.36947 1.45956 1.61431 1.64201 1.88023 1.93081 2.48712 2.72572 2.98302 3.05680 3.11070 3.35200 3.45040 3.74149 3.81133 3.88370 3.97750 4.06564 4.13896 4.20112 4.24140 4.37749 4.51176 4.53265 4.53466 4.61215 4.65337 4.67073 4.74709 4.82708 4.85934 4.94015 4.99937 5.10536 5.11495 5.21418 5.33306 5.37082 5.83605 5.89327 5.93731 6.19591 6.63062 6.81461 6.94332 7.25785 8.17400 8.83747 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.035935 B = 0.002208 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.999469 B =12676.776434 C =12930.002842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.080 4.080 3 Si 1.099 2.901 4 H -0.283 1.283 5 H -0.253 1.253 6 H -0.298 1.298 7 C -0.293 4.293 8 H 0.057 0.943 9 N -0.649 5.649 10 C 0.084 3.916 11 C 0.126 3.874 12 N -0.688 5.688 13 C 0.599 3.401 14 O -0.553 6.553 15 C -0.043 4.043 16 C -0.166 4.166 17 C -0.018 4.018 18 C 0.130 3.870 19 N -0.529 5.529 20 C 0.028 3.972 21 C -0.124 4.124 22 C -0.129 4.129 23 C 0.035 3.965 24 O 0.132 5.868 25 N -0.337 5.337 26 C 0.117 3.883 27 H 0.249 0.751 28 H 0.065 0.935 29 H 0.045 0.955 30 H 0.115 0.885 31 H 0.417 0.583 32 H 0.191 0.809 33 H 0.084 0.916 34 H 0.134 0.866 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.060 0.940 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 38.688 -3.456 6.667 39.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.273 4.273 3 Si 0.924 3.076 4 H -0.210 1.210 5 H -0.178 1.178 6 H -0.225 1.225 7 C -0.421 4.421 8 H 0.075 0.925 9 N -0.377 5.377 10 C -0.042 4.042 11 C 0.019 3.981 12 N -0.340 5.340 13 C 0.384 3.616 14 O -0.430 6.430 15 C -0.201 4.201 16 C -0.190 4.190 17 C -0.082 4.082 18 C 0.001 3.999 19 N -0.255 5.255 20 C -0.099 4.099 21 C -0.162 4.162 22 C -0.167 4.167 23 C -0.092 4.092 24 O 0.053 5.947 25 N -0.035 5.035 26 C -0.009 4.009 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.133 0.867 31 H 0.254 0.746 32 H 0.208 0.792 33 H 0.102 0.898 34 H 0.151 0.849 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 37.128 -2.172 6.585 37.770 hybrid contribution -0.337 -1.528 -0.573 1.666 sum 36.791 -3.699 6.013 37.462 Atomic orbital electron populations 1.71002 1.06609 1.28943 1.54242 1.27030 0.96547 1.04407 0.99286 0.83341 0.74637 0.72291 0.77333 1.21035 1.17768 1.22535 1.19958 0.82324 0.94953 1.44843 0.92518 1.45866 1.03482 1.10810 1.77577 1.23349 0.89775 0.94584 0.96526 1.22965 0.77333 0.97266 1.00500 1.45659 1.06622 1.71523 1.10152 1.17166 0.83989 0.76065 0.84346 1.90799 1.73835 1.51328 1.27030 1.23337 0.95908 1.09288 0.91521 1.22608 0.89328 1.04981 1.02032 1.24610 0.99062 1.02350 0.82140 1.21000 0.85886 0.92530 1.00440 1.64982 1.19099 1.08688 1.32685 1.23282 0.99642 0.94490 0.92508 1.22475 0.95575 0.97327 1.00870 1.22418 0.97793 0.95517 1.00994 1.22976 0.85756 0.98332 1.02174 1.84755 1.18835 1.64135 1.26994 1.74173 0.90246 1.15948 1.23177 1.22836 0.87690 0.94310 0.96020 0.94156 0.91733 0.93680 0.86699 0.74570 0.79154 0.89761 0.84858 0.92159 0.92522 0.90054 0.91483 0.90272 0.90344 0.91777 0.89317 0.92145 0.91445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.12 13.70 21.65 0.30 -62.83 16 2 C -0.08 -4.87 5.50 84.86 0.47 -4.40 16 3 Si 1.10 54.71 25.50 68.60 1.75 56.46 16 4 H -0.28 -13.62 6.97 99.48 0.69 -12.93 16 5 H -0.25 -11.21 5.66 99.48 0.56 -10.65 16 6 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 7 C -0.29 -17.32 11.03 84.03 0.93 -16.40 16 8 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 9 N -0.65 -31.85 3.62 -738.11 -2.67 -34.52 16 10 C 0.08 3.53 5.43 83.26 0.45 3.98 16 11 C 0.13 4.46 4.62 45.55 0.21 4.67 16 12 N -0.69 -20.17 5.39 -443.93 -2.39 -22.56 16 13 C 0.60 18.46 7.85 86.93 0.68 19.14 16 14 O -0.55 -20.59 16.54 -3.71 -0.06 -20.65 16 15 C -0.04 -1.07 7.19 42.96 0.31 -0.76 16 16 C -0.17 -3.26 10.92 22.60 0.25 -3.01 16 17 C -0.02 -0.27 5.75 25.01 0.14 -0.13 16 18 C 0.13 1.05 5.59 85.56 0.48 1.53 16 19 N -0.53 -5.43 5.39 -887.56 -4.78 -10.21 16 20 C 0.03 0.32 5.43 86.65 0.47 0.79 16 21 C -0.12 -1.10 7.06 31.80 0.22 -0.87 16 22 C -0.13 -0.75 6.93 31.47 0.22 -0.54 16 23 C 0.03 0.21 6.69 86.44 0.58 0.79 16 24 O 0.13 2.41 10.98 71.89 0.79 3.20 16 25 N -0.34 -7.70 11.84 -49.51 -0.59 -8.29 16 26 C 0.12 4.40 8.44 83.17 0.70 5.10 16 27 H 0.25 16.32 8.73 -92.71 -0.81 15.51 16 28 H 0.07 2.53 7.02 -2.39 -0.02 2.52 16 29 H 0.05 2.02 6.22 -2.38 -0.01 2.01 16 30 H 0.12 4.42 7.45 -2.39 -0.02 4.40 16 31 H 0.42 10.36 8.52 -92.71 -0.79 9.57 16 32 H 0.19 3.31 8.06 -2.91 -0.02 3.29 16 33 H 0.08 0.39 7.81 -2.39 -0.02 0.37 16 34 H 0.13 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.06 0.93 7.90 -2.39 -0.02 0.91 16 36 H 0.06 0.58 8.02 -2.39 -0.02 0.56 16 37 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.08 0.31 8.14 -2.38 -0.02 0.29 16 40 H 0.08 0.40 8.14 -2.38 -0.02 0.38 16 41 H 0.06 0.22 7.57 -2.38 -0.02 0.20 16 42 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 44 H 0.07 2.22 8.13 -2.39 -0.02 2.20 16 Total: -1.00 -75.51 361.63 -1.51 -77.02 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.04 Total: 12.49 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 6.11 Total: 9.90 kcal Atomic # 7 Polarization: -128.27 SS G_CDS: -10.14 Total: -138.41 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: 0.73 Total: -17.45 kcal Atomic # 14 Polarization: 54.71 SS G_CDS: 1.75 Total: 56.46 kcal Total: -75.51 -1.51 -77.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030965835.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.986 kcal (2) G-P(sol) polarization free energy of solvation -75.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds