Wall clock time and date at job start Tue Mar 31 2020 12:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 119.99974 * 2 1 4 4 H 1.48498 * 109.46757 * 274.99625 * 3 2 1 5 5 H 1.48501 * 109.47115 * 34.99172 * 3 2 1 6 6 H 1.48492 * 109.47166 * 154.99604 * 3 2 1 7 7 C 1.38813 * 120.00477 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00573 * 185.01156 * 7 2 1 9 9 N 1.36939 * 119.99519 * 5.01850 * 7 2 1 10 10 C 1.47581 * 134.49064 * 174.71095 * 9 7 2 11 11 C 1.53947 * 86.11629 * 155.35610 * 10 9 7 12 12 N 1.46501 * 113.74111 * 137.95582 * 11 10 9 13 13 C 1.34775 * 120.00287 * 156.93003 * 12 11 10 14 14 O 1.21633 * 119.99786 * 5.14825 * 13 12 11 15 15 C 1.47162 * 120.00214 * 185.15261 * 13 12 11 16 16 C 1.38402 * 126.88171 * 5.31259 * 15 13 12 17 17 C 1.39677 * 105.35775 * 179.97438 * 16 15 13 18 18 N 1.30865 * 107.86102 * 359.78227 * 17 16 15 19 19 N 1.28444 * 110.92856 * 0.37630 * 18 17 16 20 20 C 1.46500 * 125.19279 * 179.88386 * 19 18 17 21 21 C 1.53175 * 109.54159 * 294.50556 * 20 19 18 22 22 C 1.53089 * 109.16458 * 176.84898 * 21 20 19 23 23 O 1.42909 * 109.41336 * 302.38986 * 22 21 20 24 24 C 1.42901 * 114.09528 * 61.15676 * 23 22 21 25 25 C 1.53086 * 109.41632 * 298.84149 * 24 23 22 26 26 C 1.47812 * 134.45744 * 354.57506 * 9 7 2 27 27 H 0.96996 * 120.00488 * 0.02562 * 1 2 3 28 28 H 1.09003 * 113.76857 * 41.05893 * 10 9 7 29 29 H 1.08999 * 113.77396 * 269.65655 * 10 9 7 30 30 H 1.09003 * 113.74436 * 269.15152 * 11 10 9 31 31 H 0.97003 * 119.99707 * 336.92156 * 12 11 10 32 32 H 1.08000 * 127.32167 * 0.02562 * 16 15 13 33 33 H 1.07994 * 126.07138 * 180.02562 * 17 16 15 34 34 H 1.08992 * 109.54276 * 174.32961 * 20 19 18 35 35 H 1.09002 * 109.52737 * 56.93904 * 21 20 19 36 36 H 1.08998 * 109.57681 * 296.78391 * 21 20 19 37 37 H 1.08999 * 109.48337 * 182.41453 * 22 21 20 38 38 H 1.08997 * 109.48570 * 62.37154 * 22 21 20 39 39 H 1.09000 * 109.47950 * 58.83079 * 24 23 22 40 40 H 1.09001 * 109.48045 * 178.86233 * 24 23 22 41 41 H 1.09003 * 109.52477 * 297.70424 * 25 24 23 42 42 H 1.09004 * 109.57442 * 177.54479 * 25 24 23 43 43 H 1.09000 * 113.76851 * 90.38567 * 26 9 7 44 44 H 1.08998 * 113.84066 * 318.91993 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3920 2.1074 -1.3948 5 1 1.5043 2.6200 0.8029 6 1 3.5965 1.4121 0.5917 7 6 2.0103 -1.2021 0.0005 8 1 3.0872 -1.2039 0.0822 9 7 1.3296 -2.3858 -0.1027 10 6 1.7289 -3.8007 -0.2312 11 6 0.3594 -4.1347 0.3877 12 7 -0.3193 -5.2625 -0.2555 13 6 -1.2540 -5.9604 0.4195 14 8 -1.6015 -5.5978 1.5273 15 6 -1.8540 -7.1611 -0.1836 16 6 -1.4960 -7.7569 -1.3804 17 6 -2.3480 -8.8554 -1.5163 18 7 -3.1325 -8.8868 -0.4693 19 7 -2.8757 -7.9113 0.3258 20 6 -3.5684 -7.6472 1.5894 21 6 -5.0303 -7.2875 1.3068 22 6 -5.7652 -7.0903 2.6352 23 8 -5.6583 -8.2809 3.4184 24 6 -4.3165 -8.6403 3.7535 25 6 -3.5234 -8.8996 2.4701 26 6 -0.1005 -2.7588 -0.1275 27 1 -0.4851 0.8400 -0.0004 28 1 2.5747 -4.0774 0.3982 29 1 1.8378 -4.1345 -1.2631 30 1 0.3764 -4.2130 1.4748 31 1 -0.0960 -5.5068 -1.1673 32 1 -0.7218 -7.4403 -2.0637 33 1 -2.3551 -9.5568 -2.3374 34 1 -3.0825 -6.8193 2.1055 35 1 -5.5021 -8.0942 0.7457 36 1 -5.0740 -6.3660 0.7262 37 1 -6.8162 -6.8763 2.4409 38 1 -5.3185 -6.2571 3.1776 39 1 -3.8508 -7.8273 4.3107 40 1 -4.3237 -9.5427 4.3649 41 1 -3.9647 -9.7390 1.9325 42 1 -2.4883 -9.1314 2.7209 43 1 -0.5301 -2.7859 -1.1289 44 1 -0.7126 -2.2053 0.5845 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031078979.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:35 Heat of formation + Delta-G solvation = 54.941461 kcal Electronic energy + Delta-G solvation = -27062.313798 eV Core-core repulsion = 23211.498785 eV Total energy + Delta-G solvation = -3850.815012 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.69316 -39.48665 -39.42781 -37.56134 -35.00023 -33.67986 -32.02920 -31.49145 -30.78801 -30.69610 -27.51731 -25.37669 -24.92005 -24.04464 -23.95452 -22.52214 -21.94317 -20.42535 -20.06449 -19.42805 -17.95346 -16.85629 -16.59023 -16.46304 -16.03274 -15.86031 -15.46517 -15.10332 -14.99854 -14.60535 -14.43354 -14.37311 -13.89213 -13.80547 -13.52887 -13.03861 -12.77491 -12.72826 -12.12526 -11.79026 -11.67654 -11.56017 -11.54470 -11.29481 -10.98206 -10.91396 -10.86169 -10.69923 -10.55749 -10.10517 -10.00234 -9.76792 -9.60350 -9.29240 -9.12609 -8.87216 -8.58730 -6.98556 -5.84661 -3.18251 1.23188 2.22908 2.53620 3.27201 3.29681 3.36291 3.41771 3.43279 3.55690 4.16115 4.34592 4.38794 4.58802 4.60206 4.67412 4.84284 4.90885 4.96579 5.04253 5.11892 5.23210 5.33031 5.36128 5.38655 5.43711 5.48620 5.49857 5.62431 5.64373 5.71961 5.87248 5.95573 6.10279 6.30817 6.40020 6.45309 6.61061 6.64939 6.84601 7.16027 7.23295 7.46906 7.65326 7.89185 7.99215 8.27124 8.96052 9.62581 10.48266 11.32380 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018370 B = 0.002836 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.874929 B = 9869.250887 C =10795.775802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.004 4.004 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.228 4.228 8 H 0.083 0.917 9 N -0.606 5.606 10 C 0.113 3.887 11 C 0.092 3.908 12 N -0.695 5.695 13 C 0.587 3.413 14 O -0.544 6.544 15 C -0.032 4.032 16 C -0.191 4.191 17 C -0.006 4.006 18 N -0.278 5.278 19 N -0.251 5.251 20 C 0.134 3.866 21 C -0.162 4.162 22 C 0.065 3.935 23 O -0.381 6.381 24 C 0.065 3.935 25 C -0.160 4.160 26 C 0.157 3.843 27 H 0.255 0.745 28 H 0.051 0.949 29 H 0.037 0.963 30 H 0.112 0.888 31 H 0.401 0.599 32 H 0.161 0.839 33 H 0.184 0.816 34 H 0.140 0.860 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.031 0.969 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.746 -19.381 0.874 20.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.355 4.355 8 H 0.101 0.899 9 N -0.333 5.333 10 C -0.014 4.014 11 C -0.012 4.012 12 N -0.345 5.345 13 C 0.372 3.628 14 O -0.422 6.422 15 C -0.161 4.161 16 C -0.220 4.220 17 C -0.182 4.182 18 N -0.110 5.110 19 N -0.038 5.038 20 C 0.033 3.967 21 C -0.201 4.201 22 C -0.012 4.012 23 O -0.299 6.299 24 C -0.012 4.012 25 C -0.198 4.198 26 C 0.030 3.970 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.130 0.870 31 H 0.235 0.765 32 H 0.178 0.822 33 H 0.201 0.799 34 H 0.158 0.842 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.121 0.879 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.120 0.880 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.049 0.951 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.025 -19.416 2.394 21.544 hybrid contribution 1.547 1.376 -1.371 2.483 sum -7.478 -18.040 1.023 19.555 Atomic orbital electron populations 1.69836 1.05106 1.25605 1.55685 1.24845 0.95693 0.97690 1.01926 0.86090 0.78738 0.83332 0.77541 1.21540 1.21602 1.20449 1.18987 0.90730 0.81620 1.44198 0.89931 1.45697 1.02315 1.00282 1.84988 1.22875 0.94352 0.86788 0.97344 1.24069 0.93523 0.84868 0.98789 1.45887 1.39081 1.32313 1.17217 1.16968 0.79695 0.81248 0.84924 1.90713 1.61703 1.69579 1.20241 1.21615 0.97399 0.99179 0.97873 1.22267 1.04115 0.98519 0.97110 1.23543 0.96196 1.00445 0.98051 1.73116 1.24653 1.10142 1.03107 1.45862 1.23728 1.17318 1.16928 1.22149 0.93610 1.00825 0.80079 1.22559 0.93855 1.03814 0.99829 1.22580 1.01453 0.87458 0.89720 1.87946 1.26372 1.43945 1.71653 1.22574 0.82504 1.01312 0.94852 1.22517 1.02293 0.97792 0.97210 1.22674 0.88208 0.87879 0.98205 0.93470 0.93075 0.94531 0.86992 0.76470 0.82192 0.79857 0.84223 0.89731 0.89991 0.87939 0.92169 0.92312 0.88018 0.89471 0.90185 0.95094 0.90644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.95 11.47 55.49 0.64 -26.32 16 2 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 3 Si 0.91 21.79 29.56 -169.99 -5.02 16.77 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.23 -6.27 10.70 -15.06 -0.16 -6.43 16 8 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 9 N -0.61 -15.11 3.70 -177.88 -0.66 -15.77 16 10 C 0.11 2.16 8.69 -2.97 -0.03 2.13 16 11 C 0.09 1.70 4.36 -70.14 -0.31 1.39 16 12 N -0.70 -10.30 5.35 -56.50 -0.30 -10.60 16 13 C 0.59 9.16 7.79 -12.64 -0.10 9.06 16 14 O -0.54 -9.96 14.06 5.25 0.07 -9.88 16 15 C -0.03 -0.43 6.96 -82.06 -0.57 -1.01 16 16 C -0.19 -2.09 10.50 -38.98 -0.41 -2.50 16 17 C -0.01 -0.07 12.03 -17.43 -0.21 -0.28 16 18 N -0.28 -3.53 11.46 30.59 0.35 -3.18 16 19 N -0.25 -3.31 3.10 -50.52 -0.16 -3.47 16 20 C 0.13 1.61 2.91 -67.75 -0.20 1.41 16 21 C -0.16 -1.74 5.68 -26.59 -0.15 -1.89 16 22 C 0.07 0.61 6.84 37.20 0.25 0.87 16 23 O -0.38 -4.02 10.77 -35.23 -0.38 -4.40 16 24 C 0.06 0.58 6.84 37.20 0.25 0.84 16 25 C -0.16 -1.62 5.54 -26.59 -0.15 -1.77 16 26 C 0.16 3.63 7.26 -2.84 -0.02 3.61 16 27 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.04 0.64 8.11 -51.93 -0.42 0.22 16 30 H 0.11 2.22 7.57 -51.93 -0.39 1.82 16 31 H 0.40 4.81 7.79 -40.82 -0.32 4.49 16 32 H 0.16 1.29 7.62 -52.49 -0.40 0.89 16 33 H 0.18 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.14 1.92 5.33 -51.93 -0.28 1.65 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.09 0.93 8.02 -51.93 -0.42 0.52 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.08 1.99 7.31 -51.93 -0.38 1.61 16 LS Contribution 361.65 15.07 5.45 5.45 Total: -1.00 -33.12 361.65 -8.27 -41.40 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.38 Total: 4.78 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -1.88 Total: 5.23 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: -0.13 Total: -59.34 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.31 Total: -14.28 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.12 -8.27 -41.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031078979.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.339 kcal (2) G-P(sol) polarization free energy of solvation -33.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds