Wall clock time and date at job start Tue Mar 31 2020 12:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 119.99974 * 2 1 4 4 H 1.48498 * 109.46757 * 274.99625 * 3 2 1 5 5 H 1.48501 * 109.47115 * 34.99172 * 3 2 1 6 6 H 1.48492 * 109.47166 * 154.99604 * 3 2 1 7 7 C 1.38813 * 120.00477 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00573 * 185.01156 * 7 2 1 9 9 N 1.36939 * 119.99519 * 5.01850 * 7 2 1 10 10 C 1.47581 * 134.49064 * 174.71095 * 9 7 2 11 11 C 1.53947 * 86.11629 * 155.35610 * 10 9 7 12 12 N 1.46501 * 113.74111 * 137.95582 * 11 10 9 13 13 C 1.34775 * 120.00287 * 156.93003 * 12 11 10 14 14 O 1.21633 * 119.99786 * 5.14825 * 13 12 11 15 15 C 1.47162 * 120.00214 * 185.15261 * 13 12 11 16 16 C 1.38402 * 126.88171 * 5.31259 * 15 13 12 17 17 C 1.39677 * 105.35775 * 179.97438 * 16 15 13 18 18 N 1.30865 * 107.86102 * 359.78227 * 17 16 15 19 19 N 1.28444 * 110.92856 * 0.37630 * 18 17 16 20 20 C 1.46500 * 125.19279 * 179.88386 * 19 18 17 21 21 C 1.53175 * 109.54159 * 294.50556 * 20 19 18 22 22 C 1.53089 * 109.16458 * 176.84898 * 21 20 19 23 23 O 1.42909 * 109.41336 * 302.38986 * 22 21 20 24 24 C 1.42901 * 114.09528 * 61.15676 * 23 22 21 25 25 C 1.53086 * 109.41632 * 298.84149 * 24 23 22 26 26 C 1.47812 * 134.45744 * 354.57506 * 9 7 2 27 27 H 0.96996 * 120.00488 * 0.02562 * 1 2 3 28 28 H 1.09003 * 113.76857 * 41.05893 * 10 9 7 29 29 H 1.08999 * 113.77396 * 269.65655 * 10 9 7 30 30 H 1.09003 * 113.74436 * 269.15152 * 11 10 9 31 31 H 0.97003 * 119.99707 * 336.92156 * 12 11 10 32 32 H 1.08000 * 127.32167 * 0.02562 * 16 15 13 33 33 H 1.07994 * 126.07138 * 180.02562 * 17 16 15 34 34 H 1.08992 * 109.54276 * 174.32961 * 20 19 18 35 35 H 1.09002 * 109.52737 * 56.93904 * 21 20 19 36 36 H 1.08998 * 109.57681 * 296.78391 * 21 20 19 37 37 H 1.08999 * 109.48337 * 182.41453 * 22 21 20 38 38 H 1.08997 * 109.48570 * 62.37154 * 22 21 20 39 39 H 1.09000 * 109.47950 * 58.83079 * 24 23 22 40 40 H 1.09001 * 109.48045 * 178.86233 * 24 23 22 41 41 H 1.09003 * 109.52477 * 297.70424 * 25 24 23 42 42 H 1.09004 * 109.57442 * 177.54479 * 25 24 23 43 43 H 1.09000 * 113.76851 * 90.38567 * 26 9 7 44 44 H 1.08998 * 113.84066 * 318.91993 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3920 2.1074 -1.3948 5 1 1.5043 2.6200 0.8029 6 1 3.5965 1.4121 0.5917 7 6 2.0103 -1.2021 0.0005 8 1 3.0872 -1.2039 0.0822 9 7 1.3296 -2.3858 -0.1027 10 6 1.7289 -3.8007 -0.2312 11 6 0.3594 -4.1347 0.3877 12 7 -0.3193 -5.2625 -0.2555 13 6 -1.2540 -5.9604 0.4195 14 8 -1.6015 -5.5978 1.5273 15 6 -1.8540 -7.1611 -0.1836 16 6 -1.4960 -7.7569 -1.3804 17 6 -2.3480 -8.8554 -1.5163 18 7 -3.1325 -8.8868 -0.4693 19 7 -2.8757 -7.9113 0.3258 20 6 -3.5684 -7.6472 1.5894 21 6 -5.0303 -7.2875 1.3068 22 6 -5.7652 -7.0903 2.6352 23 8 -5.6583 -8.2809 3.4184 24 6 -4.3165 -8.6403 3.7535 25 6 -3.5234 -8.8996 2.4701 26 6 -0.1005 -2.7588 -0.1275 27 1 -0.4851 0.8400 -0.0004 28 1 2.5747 -4.0774 0.3982 29 1 1.8378 -4.1345 -1.2631 30 1 0.3764 -4.2130 1.4748 31 1 -0.0960 -5.5068 -1.1673 32 1 -0.7218 -7.4403 -2.0637 33 1 -2.3551 -9.5568 -2.3374 34 1 -3.0825 -6.8193 2.1055 35 1 -5.5021 -8.0942 0.7457 36 1 -5.0740 -6.3660 0.7262 37 1 -6.8162 -6.8763 2.4409 38 1 -5.3185 -6.2571 3.1776 39 1 -3.8508 -7.8273 4.3107 40 1 -4.3237 -9.5427 4.3649 41 1 -3.9647 -9.7390 1.9325 42 1 -2.4883 -9.1314 2.7209 43 1 -0.5301 -2.7859 -1.1289 44 1 -0.7126 -2.2053 0.5845 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031078979.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:34 Heat of formation + Delta-G solvation = 31.476951 kcal Electronic energy + Delta-G solvation = -27063.331295 eV Core-core repulsion = 23211.498785 eV Total energy + Delta-G solvation = -3851.832510 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.62574 -40.86559 -40.25617 -39.14865 -35.92899 -35.14828 -33.87864 -32.27780 -31.84517 -31.62246 -29.37957 -26.64154 -26.28471 -25.53098 -24.75224 -23.84290 -22.94473 -21.50841 -21.45608 -20.58641 -19.06908 -18.77560 -17.68989 -17.31538 -17.21487 -16.97988 -16.75317 -16.52673 -15.90894 -15.79882 -15.61810 -15.60661 -15.39245 -14.72304 -14.56856 -14.40355 -13.96802 -13.74954 -13.49949 -13.36838 -13.23484 -12.87323 -12.72590 -12.65034 -12.48522 -12.32834 -12.09716 -11.95663 -11.84177 -11.59955 -11.52601 -11.01363 -10.89707 -10.79594 -10.34741 -10.04368 -9.94107 -8.97674 -7.93929 -5.28389 0.19549 1.27019 1.46358 1.48023 1.57169 1.66562 2.08851 2.12997 2.48721 2.81483 3.22388 3.29375 3.35902 3.50641 3.56697 3.80197 3.80611 3.82759 4.00224 4.09261 4.13557 4.25362 4.30753 4.44184 4.48986 4.49933 4.60405 4.64051 4.67756 4.75743 4.86736 4.87509 4.87857 4.90294 5.03461 5.12696 5.21687 5.47639 5.55524 5.63672 5.74394 5.87651 6.08619 6.41666 6.87049 7.03726 7.10842 7.57285 8.49703 9.23278 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018370 B = 0.002836 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.874929 B = 9869.250887 C =10795.775802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.067 4.067 3 Si 0.980 3.020 4 H -0.286 1.286 5 H -0.297 1.297 6 H -0.264 1.264 7 C -0.235 4.235 8 H 0.092 0.908 9 N -0.638 5.638 10 C 0.124 3.876 11 C 0.124 3.876 12 N -0.683 5.683 13 C 0.588 3.412 14 O -0.577 6.577 15 C -0.062 4.062 16 C -0.172 4.172 17 C -0.005 4.005 18 N -0.292 5.292 19 N -0.260 5.260 20 C 0.127 3.873 21 C -0.154 4.154 22 C 0.066 3.934 23 O -0.392 6.392 24 C 0.064 3.936 25 C -0.150 4.150 26 C 0.154 3.846 27 H 0.248 0.752 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.418 0.582 32 H 0.193 0.807 33 H 0.220 0.780 34 H 0.119 0.881 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.121 0.879 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.124 0.876 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.026 0.974 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.672 -21.262 -0.276 22.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.261 4.261 3 Si 0.808 3.192 4 H -0.213 1.213 5 H -0.224 1.224 6 H -0.188 1.188 7 C -0.363 4.363 8 H 0.109 0.891 9 N -0.366 5.366 10 C -0.002 4.002 11 C 0.017 3.983 12 N -0.334 5.334 13 C 0.375 3.625 14 O -0.458 6.458 15 C -0.189 4.189 16 C -0.201 4.201 17 C -0.180 4.180 18 N -0.124 5.124 19 N -0.048 5.048 20 C 0.027 3.973 21 C -0.193 4.193 22 C -0.011 4.011 23 O -0.310 6.310 24 C -0.013 4.013 25 C -0.188 4.188 26 C 0.027 3.973 27 H 0.057 0.943 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.116 0.884 31 H 0.256 0.744 32 H 0.210 0.790 33 H 0.237 0.763 34 H 0.137 0.863 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.139 0.861 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.142 0.858 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.044 0.956 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -7.921 -21.353 1.216 22.807 hybrid contribution 1.205 1.843 -1.051 2.440 sum -6.716 -19.510 0.165 20.634 Atomic orbital electron populations 1.70038 1.06671 1.25734 1.57743 1.25707 0.96516 1.01161 1.02673 0.85032 0.77940 0.78918 0.77287 1.21328 1.22405 1.18796 1.19429 0.91402 0.82903 1.42559 0.89068 1.46016 1.03242 1.01918 1.85375 1.23029 0.94721 0.83194 0.99222 1.23309 0.93166 0.83806 0.97971 1.45539 1.38811 1.31107 1.17907 1.17252 0.79168 0.81663 0.84448 1.90709 1.62648 1.70584 1.21840 1.21467 0.98821 0.99265 0.99373 1.22717 1.03901 0.97513 0.95934 1.24213 0.95045 1.00676 0.98094 1.73124 1.25407 1.10108 1.03808 1.45966 1.23943 1.17540 1.17309 1.22162 0.93856 1.00993 0.80278 1.22489 0.93325 1.03078 1.00381 1.22657 1.02360 0.87196 0.88920 1.87930 1.27175 1.44225 1.71694 1.22709 0.81772 1.02371 0.94459 1.22445 1.02411 0.96651 0.97313 1.22558 0.87396 0.90368 0.96976 0.94272 0.91360 0.91324 0.88432 0.74406 0.79034 0.76346 0.86323 0.90051 0.90929 0.86142 0.92288 0.92183 0.85834 0.89874 0.90250 0.95578 0.95047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.97 11.47 21.65 0.25 -57.72 16 2 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 3 Si 0.98 45.26 29.56 68.60 2.03 47.29 16 4 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 5 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.23 -12.90 10.70 84.03 0.90 -12.00 16 8 H 0.09 4.71 7.83 -2.91 -0.02 4.68 16 9 N -0.64 -31.76 3.70 -716.68 -2.65 -34.41 16 10 C 0.12 4.45 8.69 86.49 0.75 5.20 16 11 C 0.12 4.51 4.36 46.75 0.20 4.71 16 12 N -0.68 -19.32 5.35 -450.91 -2.41 -21.73 16 13 C 0.59 18.15 7.79 86.59 0.67 18.83 16 14 O -0.58 -21.74 14.06 -4.13 -0.06 -21.80 16 15 C -0.06 -1.59 6.96 40.78 0.28 -1.31 16 16 C -0.17 -3.23 10.50 22.66 0.24 -2.99 16 17 C 0.00 -0.09 12.03 85.18 1.02 0.94 16 18 N -0.29 -6.94 11.46 -57.14 -0.65 -7.59 16 19 N -0.26 -6.68 3.10 -313.74 -0.97 -7.65 16 20 C 0.13 3.11 2.91 45.11 0.13 3.24 16 21 C -0.15 -3.34 5.68 30.68 0.17 -3.17 16 22 C 0.07 1.23 6.84 72.01 0.49 1.72 16 23 O -0.39 -8.00 10.77 -148.98 -1.60 -9.61 16 24 C 0.06 1.10 6.84 72.01 0.49 1.60 16 25 C -0.15 -3.00 5.54 30.68 0.17 -2.83 16 26 C 0.15 7.31 7.26 86.44 0.63 7.94 16 27 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 28 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.07 2.11 8.11 -2.39 -0.02 2.09 16 30 H 0.10 3.91 7.57 -2.39 -0.02 3.89 16 31 H 0.42 8.88 7.79 -92.71 -0.72 8.16 16 32 H 0.19 2.22 7.62 -2.91 -0.02 2.19 16 33 H 0.22 2.22 8.06 -2.91 -0.02 2.20 16 34 H 0.12 3.43 5.33 -2.39 -0.01 3.41 16 35 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.08 1.73 8.02 -2.39 -0.02 1.71 16 42 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.03 1.75 7.31 -2.39 -0.02 1.73 16 Total: -1.00 -73.86 361.65 0.85 -73.01 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: 0.30 Total: 21.70 kcal Atomic # 6 Polarization: 11.89 SS G_CDS: 6.63 Total: 18.52 kcal Atomic # 7 Polarization: -122.67 SS G_CDS: -6.45 Total: -129.11 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -1.66 Total: -31.41 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -73.86 0.85 -73.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031078979.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.488 kcal (2) G-P(sol) polarization free energy of solvation -73.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds