Wall clock time and date at job start Tue Mar 31 2020 12:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00023 * 2 1 4 4 H 1.48507 * 109.47207 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47429 * 300.00020 * 3 2 1 6 6 H 1.48509 * 109.47149 * 59.99964 * 3 2 1 7 7 C 1.38814 * 120.00012 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00058 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99828 * 359.97438 * 7 2 1 10 10 C 1.47580 * 134.49091 * 179.97438 * 9 7 2 11 11 C 1.53948 * 86.11375 * 155.36051 * 10 9 7 12 12 C 1.53009 * 113.73826 * 137.95419 * 11 10 9 13 13 N 1.46498 * 109.46981 * 175.00154 * 12 11 10 14 14 C 1.34768 * 119.99974 * 180.02562 * 13 12 11 15 15 O 1.21604 * 120.00176 * 359.97438 * 14 13 12 16 16 C 1.47433 * 120.00011 * 179.97438 * 14 13 12 17 17 C 1.38042 * 126.41639 * 359.97438 * 16 14 13 18 18 N 1.34256 * 107.41939 * 179.97438 * 17 16 14 19 19 H 0.96994 * 125.75586 * 179.97438 * 18 17 16 20 20 N 1.39935 * 108.49031 * 359.77907 * 18 17 16 21 21 C 1.30454 * 108.89765 * 0.38677 * 20 18 17 22 22 C 1.50695 * 125.98798 * 179.88919 * 21 20 18 23 23 H 1.09000 * 110.27331 * 194.04915 * 22 21 20 24 24 C 1.54947 * 110.39771 * 71.90086 * 22 21 20 25 25 C 1.55457 * 100.98961 * 204.64744 * 24 22 21 26 26 C 1.54382 * 102.18540 * 34.03935 * 25 24 22 27 27 O 1.43233 * 107.66464 * 338.74226 * 26 25 24 28 28 C 1.47583 * 134.49370 * 0.02562 * 9 7 2 29 29 H 0.97010 * 119.99852 * 0.02562 * 1 2 3 30 30 H 1.08999 * 113.76735 * 41.06130 * 10 9 7 31 31 H 1.08990 * 113.87270 * 269.67466 * 10 9 7 32 32 H 1.08997 * 113.74582 * 269.15246 * 11 10 9 33 33 H 1.08997 * 109.46885 * 55.00137 * 12 11 10 34 34 H 1.09001 * 109.46739 * 294.99976 * 12 11 10 35 35 H 0.97004 * 120.00011 * 359.97438 * 13 12 11 36 36 H 1.08000 * 126.28652 * 0.02562 * 17 16 14 37 37 H 1.08999 * 111.12360 * 322.51243 * 24 22 21 38 38 H 1.09001 * 111.12353 * 86.63548 * 24 22 21 39 39 H 1.08994 * 110.83103 * 275.89000 * 25 24 22 40 40 H 1.08999 * 110.92148 * 152.22878 * 25 24 22 41 41 H 1.09002 * 109.83024 * 219.18066 * 26 25 24 42 42 H 1.08996 * 109.83002 * 98.29659 * 26 25 24 43 43 H 1.08993 * 113.76818 * 90.33643 * 28 9 7 44 44 H 1.09004 * 113.76466 * 318.93801 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 1.7201 -3.8102 0.0019 11 6 0.3474 -4.0826 0.6435 12 6 -0.3636 -5.3136 0.0775 13 7 -1.5969 -5.5545 0.8306 14 6 -2.3917 -6.5937 0.5074 15 8 -2.0855 -7.3312 -0.4097 16 6 -3.6326 -6.8364 1.2656 17 6 -4.1053 -6.0881 2.3249 18 7 -5.2594 -6.6442 2.7265 19 1 -5.8167 -6.3297 3.4554 20 7 -5.5251 -7.7515 1.9132 21 6 -4.5608 -7.8782 1.0438 22 6 -4.4583 -8.9449 -0.0157 23 1 -3.4517 -8.9670 -0.4333 24 6 -5.4998 -8.6956 -1.1356 25 6 -5.6758 -10.1327 -1.7018 26 6 -5.5093 -11.0036 -0.4380 27 8 -4.7984 -10.2279 0.5338 28 6 -0.1034 -2.7574 0.0019 29 1 -0.4850 0.8401 -0.0004 30 1 2.5628 -4.0321 0.6566 31 1 1.8318 -4.2371 -0.9946 32 1 0.3606 -4.0631 1.7332 33 1 0.2898 -6.1818 0.1630 34 1 -0.6058 -5.1430 -0.9714 35 1 -1.8410 -4.9664 1.5624 36 1 -3.6339 -5.2151 2.7516 37 1 -6.4364 -8.3193 -0.7243 38 1 -5.1065 -8.0188 -1.8941 39 1 -4.9003 -10.3586 -2.4336 40 1 -6.6681 -10.2619 -2.1341 41 1 -4.9424 -11.9024 -0.6804 42 1 -6.4888 -11.2786 -0.0468 43 1 -0.5272 -2.8739 -0.9954 44 1 -0.7169 -2.1385 0.6567 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031917624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:09 Heat of formation + Delta-G solvation = 45.735415 kcal Electronic energy + Delta-G solvation = -26377.201506 eV Core-core repulsion = 22525.987290 eV Total energy + Delta-G solvation = -3851.214217 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.67523 -39.30031 -39.16422 -37.87868 -34.40832 -32.75266 -32.23381 -32.13818 -30.77254 -28.94780 -28.52073 -25.87392 -24.79642 -23.71576 -23.14423 -21.88024 -21.81990 -20.30398 -19.95053 -19.22263 -18.31903 -16.77568 -16.68586 -16.34641 -16.16656 -15.67373 -15.47527 -15.09333 -14.93249 -14.46818 -14.16637 -13.79456 -13.75896 -13.59973 -13.31701 -13.01539 -12.84873 -12.32406 -11.94986 -11.82589 -11.56592 -11.42605 -11.34609 -11.14585 -11.06866 -11.01880 -10.74886 -10.56797 -10.08167 -9.95039 -9.77867 -9.74392 -9.47542 -9.38982 -9.08981 -8.82557 -8.70213 -6.89604 -5.79482 -3.11281 1.32694 1.90338 2.44564 3.36567 3.39426 3.42631 3.43554 3.44812 3.77526 4.15283 4.37404 4.43440 4.47852 4.69341 4.72007 5.00881 5.08768 5.12675 5.19978 5.24664 5.31636 5.36493 5.40648 5.51696 5.55151 5.66596 5.72484 5.76176 5.84128 5.97326 6.06475 6.14594 6.26770 6.36924 6.56426 6.64765 6.76366 6.81002 6.88006 7.20135 7.31033 7.34194 7.53392 7.72292 7.96241 8.41056 9.02917 9.68751 10.58015 11.37754 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024351 B = 0.002348 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.586904 B =11920.549517 C =12375.335946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.911 3.089 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.220 4.220 8 H 0.080 0.920 9 N -0.613 5.613 10 C 0.128 3.872 11 C -0.153 4.153 12 C 0.132 3.868 13 N -0.719 5.719 14 C 0.591 3.409 15 O -0.547 6.547 16 C -0.277 4.277 17 C 0.107 3.893 18 N -0.461 5.461 19 H 0.445 0.555 20 N -0.276 5.276 21 C 0.131 3.869 22 C 0.152 3.848 23 H 0.121 0.879 24 C -0.143 4.143 25 C -0.154 4.154 26 C 0.052 3.948 27 O -0.373 6.373 28 C 0.169 3.831 29 H 0.252 0.748 30 H 0.045 0.955 31 H 0.037 0.963 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.398 0.602 36 H 0.190 0.810 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.027 0.973 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.155 -17.436 3.454 22.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.348 4.348 8 H 0.098 0.902 9 N -0.339 5.339 10 C 0.001 3.999 11 C -0.173 4.173 12 C 0.008 3.992 13 N -0.369 5.369 14 C 0.378 3.622 15 O -0.426 6.426 16 C -0.292 4.292 17 C -0.046 4.046 18 N -0.166 5.166 19 H 0.289 0.711 20 N -0.099 5.099 21 C -0.037 4.037 22 C 0.093 3.907 23 H 0.139 0.861 24 C -0.181 4.181 25 C -0.192 4.192 26 C -0.024 4.024 27 O -0.292 6.292 28 C 0.043 3.957 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.232 0.768 36 H 0.207 0.793 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.045 0.955 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.905 -18.150 3.415 23.118 hybrid contribution 0.687 2.017 0.266 2.147 sum -13.218 -16.133 3.681 21.179 Atomic orbital electron populations 1.69824 1.05001 1.25157 1.56991 1.24781 0.95700 0.97526 1.02599 0.86052 0.78778 0.83719 0.77247 1.20451 1.21757 1.21741 1.19085 0.90335 0.82004 1.43395 0.90202 1.45964 1.02541 0.99338 1.86099 1.22494 0.94047 0.86410 0.96935 1.23811 0.98223 0.94784 1.00480 1.21458 0.84061 0.97815 0.95885 1.45873 1.24261 1.29910 1.36815 1.17201 0.81815 0.80516 0.82708 1.90699 1.73891 1.47287 1.30773 1.20277 1.01489 1.02808 1.04600 1.23229 0.88211 0.98149 0.95030 1.46178 1.18900 1.22829 1.28650 0.71055 1.77206 1.22893 1.03388 1.06409 1.22179 0.90848 0.95230 0.95481 1.21615 1.01003 0.79841 0.88217 0.86124 1.23282 0.99363 0.97586 0.97893 1.23150 1.03285 0.94552 0.98211 1.23101 0.96639 0.94438 0.88271 1.88462 1.75844 1.26015 1.38913 1.22328 0.88094 0.88495 0.96752 0.93758 0.93677 0.94581 0.89249 0.91810 0.91266 0.76808 0.79277 0.90272 0.89133 0.90063 0.89887 0.91283 0.91453 0.95489 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.82 11.38 55.49 0.63 -26.19 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.22 -6.12 10.70 -15.06 -0.16 -6.28 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 N -0.61 -15.39 3.70 -177.90 -0.66 -16.05 16 10 C 0.13 2.51 8.50 -2.97 -0.03 2.48 16 11 C -0.15 -2.61 3.94 -89.67 -0.35 -2.96 16 12 C 0.13 1.96 5.53 -4.04 -0.02 1.94 16 13 N -0.72 -9.33 5.54 -61.38 -0.34 -9.67 16 14 C 0.59 8.46 7.81 -12.52 -0.10 8.36 16 15 O -0.55 -9.40 14.67 5.27 0.08 -9.32 16 16 C -0.28 -3.44 6.13 -105.07 -0.64 -4.08 16 17 C 0.11 0.93 11.52 -16.56 -0.19 0.74 16 18 N -0.46 -3.96 7.29 30.85 0.22 -3.74 16 19 H 0.44 2.14 8.96 -182.73 -1.64 0.50 16 20 N -0.28 -3.45 12.63 33.89 0.43 -3.02 16 21 C 0.13 1.75 6.21 -82.02 -0.51 1.24 16 22 C 0.15 1.96 3.72 -26.86 -0.10 1.86 16 23 H 0.12 1.73 5.91 -51.93 -0.31 1.42 16 24 C -0.14 -1.47 6.56 -24.40 -0.16 -1.63 16 25 C -0.15 -1.26 7.03 -24.70 -0.17 -1.43 16 26 C 0.05 0.49 7.79 37.88 0.30 0.79 16 27 O -0.37 -4.96 11.02 -35.23 -0.39 -5.34 16 28 C 0.17 3.75 7.07 -2.96 -0.02 3.73 16 29 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 1.13 7.83 -51.93 -0.41 0.72 16 35 H 0.40 4.19 7.40 -40.82 -0.30 3.89 16 36 H 0.19 0.91 7.46 -52.49 -0.39 0.51 16 37 H 0.08 0.82 8.05 -51.93 -0.42 0.41 16 38 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.03 0.63 7.89 -51.93 -0.41 0.22 16 44 H 0.07 1.74 7.15 -51.93 -0.37 1.36 16 LS Contribution 365.17 15.07 5.50 5.50 Total: -1.00 -35.70 365.17 -9.40 -45.10 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -7.59 Total: 1.50 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -2.26 Total: 4.37 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: 0.29 Total: -58.66 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.31 Total: -14.67 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.70 -9.40 -45.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031917624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.831 kcal (2) G-P(sol) polarization free energy of solvation -35.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds