Wall clock time and date at job start Tue Mar 31 2020 12:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00023 * 2 1 4 4 H 1.48507 * 109.47207 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47429 * 300.00020 * 3 2 1 6 6 H 1.48509 * 109.47149 * 59.99964 * 3 2 1 7 7 C 1.38814 * 120.00012 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00058 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99828 * 359.97438 * 7 2 1 10 10 C 1.47580 * 134.49091 * 179.97438 * 9 7 2 11 11 C 1.53948 * 86.11375 * 155.36051 * 10 9 7 12 12 C 1.53009 * 113.73826 * 137.95419 * 11 10 9 13 13 N 1.46498 * 109.46981 * 175.00154 * 12 11 10 14 14 C 1.34768 * 119.99974 * 180.02562 * 13 12 11 15 15 O 1.21604 * 120.00176 * 359.97438 * 14 13 12 16 16 C 1.47433 * 120.00011 * 179.97438 * 14 13 12 17 17 C 1.38042 * 126.41639 * 359.97438 * 16 14 13 18 18 N 1.34256 * 107.41939 * 179.97438 * 17 16 14 19 19 H 0.96994 * 125.75586 * 179.97438 * 18 17 16 20 20 N 1.39935 * 108.49031 * 359.77907 * 18 17 16 21 21 C 1.30454 * 108.89765 * 0.38677 * 20 18 17 22 22 C 1.50695 * 125.98798 * 179.88919 * 21 20 18 23 23 H 1.09000 * 110.27331 * 194.04915 * 22 21 20 24 24 C 1.54947 * 110.39771 * 71.90086 * 22 21 20 25 25 C 1.55457 * 100.98961 * 204.64744 * 24 22 21 26 26 C 1.54382 * 102.18540 * 34.03935 * 25 24 22 27 27 O 1.43233 * 107.66464 * 338.74226 * 26 25 24 28 28 C 1.47583 * 134.49370 * 0.02562 * 9 7 2 29 29 H 0.97010 * 119.99852 * 0.02562 * 1 2 3 30 30 H 1.08999 * 113.76735 * 41.06130 * 10 9 7 31 31 H 1.08990 * 113.87270 * 269.67466 * 10 9 7 32 32 H 1.08997 * 113.74582 * 269.15246 * 11 10 9 33 33 H 1.08997 * 109.46885 * 55.00137 * 12 11 10 34 34 H 1.09001 * 109.46739 * 294.99976 * 12 11 10 35 35 H 0.97004 * 120.00011 * 359.97438 * 13 12 11 36 36 H 1.08000 * 126.28652 * 0.02562 * 17 16 14 37 37 H 1.08999 * 111.12360 * 322.51243 * 24 22 21 38 38 H 1.09001 * 111.12353 * 86.63548 * 24 22 21 39 39 H 1.08994 * 110.83103 * 275.89000 * 25 24 22 40 40 H 1.08999 * 110.92148 * 152.22878 * 25 24 22 41 41 H 1.09002 * 109.83024 * 219.18066 * 26 25 24 42 42 H 1.08996 * 109.83002 * 98.29659 * 26 25 24 43 43 H 1.08993 * 113.76818 * 90.33643 * 28 9 7 44 44 H 1.09004 * 113.76466 * 318.93801 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 1.7201 -3.8102 0.0019 11 6 0.3474 -4.0826 0.6435 12 6 -0.3636 -5.3136 0.0775 13 7 -1.5969 -5.5545 0.8306 14 6 -2.3917 -6.5937 0.5074 15 8 -2.0855 -7.3312 -0.4097 16 6 -3.6326 -6.8364 1.2656 17 6 -4.1053 -6.0881 2.3249 18 7 -5.2594 -6.6442 2.7265 19 1 -5.8167 -6.3297 3.4554 20 7 -5.5251 -7.7515 1.9132 21 6 -4.5608 -7.8782 1.0438 22 6 -4.4583 -8.9449 -0.0157 23 1 -3.4517 -8.9670 -0.4333 24 6 -5.4998 -8.6956 -1.1356 25 6 -5.6758 -10.1327 -1.7018 26 6 -5.5093 -11.0036 -0.4380 27 8 -4.7984 -10.2279 0.5338 28 6 -0.1034 -2.7574 0.0019 29 1 -0.4850 0.8401 -0.0004 30 1 2.5628 -4.0321 0.6566 31 1 1.8318 -4.2371 -0.9946 32 1 0.3606 -4.0631 1.7332 33 1 0.2898 -6.1818 0.1630 34 1 -0.6058 -5.1430 -0.9714 35 1 -1.8410 -4.9664 1.5624 36 1 -3.6339 -5.2151 2.7516 37 1 -6.4364 -8.3193 -0.7243 38 1 -5.1065 -8.0188 -1.8941 39 1 -4.9003 -10.3586 -2.4336 40 1 -6.6681 -10.2619 -2.1341 41 1 -4.9424 -11.9024 -0.6804 42 1 -6.4888 -11.2786 -0.0468 43 1 -0.5272 -2.8739 -0.9954 44 1 -0.7169 -2.1385 0.6567 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031917624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:08 Heat of formation + Delta-G solvation = 18.858445 kcal Electronic energy + Delta-G solvation = -26378.366979 eV Core-core repulsion = 22525.987290 eV Total energy + Delta-G solvation = -3852.379689 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.52500 -40.41635 -40.13101 -39.40398 -35.69542 -34.16228 -33.60716 -32.92371 -31.82559 -30.21520 -29.65508 -27.49518 -26.48944 -24.53381 -24.39217 -23.31090 -22.56619 -21.38608 -20.96372 -20.49101 -19.34525 -18.68858 -17.52269 -17.37784 -16.98661 -16.95337 -16.87088 -16.39903 -15.93337 -15.77463 -15.43324 -15.32202 -14.77517 -14.54802 -14.48618 -14.25778 -13.89990 -13.85312 -13.27502 -13.04977 -12.87205 -12.72283 -12.66026 -12.50809 -12.29191 -12.17096 -12.01120 -11.85790 -11.76371 -11.53881 -11.22078 -10.93679 -10.84325 -10.76185 -10.34342 -10.11908 -9.72184 -8.88303 -7.88770 -5.21214 0.54046 0.95310 1.47135 1.47930 1.57962 1.75429 2.31794 2.41368 2.49395 2.93697 3.32488 3.34332 3.44522 3.60126 3.69111 3.80255 4.00018 4.03535 4.14091 4.23688 4.30659 4.36609 4.39089 4.43345 4.59873 4.68618 4.80464 4.84361 4.87412 4.91830 4.94806 4.96599 5.00599 5.16219 5.17835 5.27553 5.30064 5.51735 5.60107 5.71237 5.97995 5.99996 6.24917 6.46181 6.71761 6.95910 7.35400 7.63456 8.59582 9.28164 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024351 B = 0.002348 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.586904 B =11920.549517 C =12375.335946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.976 3.024 4 H -0.267 1.267 5 H -0.295 1.295 6 H -0.290 1.290 7 C -0.232 4.232 8 H 0.082 0.918 9 N -0.646 5.646 10 C 0.124 3.876 11 C -0.112 4.112 12 C 0.144 3.856 13 N -0.710 5.710 14 C 0.591 3.409 15 O -0.583 6.583 16 C -0.311 4.311 17 C 0.138 3.862 18 N -0.444 5.444 19 H 0.462 0.538 20 N -0.302 5.302 21 C 0.116 3.884 22 C 0.147 3.853 23 H 0.099 0.901 24 C -0.139 4.139 25 C -0.146 4.146 26 C 0.043 3.957 27 O -0.399 6.399 28 C 0.166 3.834 29 H 0.248 0.752 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.412 0.588 36 H 0.234 0.766 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.010 0.990 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.299 -17.664 4.604 22.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.261 4.261 3 Si 0.805 3.195 4 H -0.191 1.191 5 H -0.222 1.222 6 H -0.217 1.217 7 C -0.361 4.361 8 H 0.100 0.900 9 N -0.373 5.373 10 C -0.002 4.002 11 C -0.132 4.132 12 C 0.020 3.980 13 N -0.361 5.361 14 C 0.380 3.620 15 O -0.465 6.465 16 C -0.326 4.326 17 C -0.016 4.016 18 N -0.150 5.150 19 H 0.311 0.689 20 N -0.125 5.125 21 C -0.053 4.053 22 C 0.088 3.912 23 H 0.117 0.883 24 C -0.178 4.178 25 C -0.183 4.183 26 C -0.033 4.033 27 O -0.318 6.318 28 C 0.041 3.959 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.126 0.874 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.248 0.752 36 H 0.251 0.749 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.124 0.876 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.028 0.972 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.063 -18.404 4.601 23.615 hybrid contribution 0.722 2.046 -0.062 2.170 sum -13.341 -16.359 4.539 21.592 Atomic orbital electron populations 1.69993 1.06277 1.25437 1.58410 1.25590 0.96616 1.00713 1.03186 0.85040 0.78206 0.79580 0.76679 1.19109 1.22245 1.21680 1.19458 0.90838 0.83486 1.42300 0.90027 1.46398 1.04016 1.00687 1.86181 1.22710 0.95948 0.83502 0.97990 1.23401 0.96029 0.92838 1.00927 1.21174 0.84865 0.96934 0.95071 1.45686 1.23499 1.29942 1.36929 1.17447 0.82237 0.80030 0.82303 1.90681 1.74811 1.48569 1.32427 1.20215 1.01391 1.04365 1.06630 1.23789 0.87180 0.97783 0.92869 1.46211 1.18980 1.21585 1.28259 0.68889 1.77133 1.23196 1.05076 1.07076 1.22314 0.91430 0.95683 0.95849 1.21527 1.00543 0.80037 0.89059 0.88336 1.23238 0.98447 0.98960 0.97147 1.23156 1.04811 0.92596 0.97750 1.23337 0.97045 0.94615 0.88298 1.88421 1.76435 1.26504 1.40469 1.22257 0.86822 0.90960 0.95885 0.94310 0.92046 0.93656 0.87436 0.90725 0.92853 0.75170 0.74950 0.90480 0.89397 0.89499 0.87625 0.90126 0.90417 0.97173 0.93474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.11 11.38 21.65 0.25 -55.87 16 2 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 3 Si 0.98 45.09 29.55 68.60 2.03 47.11 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 7 C -0.23 -12.85 10.70 84.03 0.90 -11.95 16 8 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 9 N -0.65 -32.22 3.70 -716.77 -2.65 -34.87 16 10 C 0.12 4.66 8.50 86.48 0.74 5.40 16 11 C -0.11 -3.64 3.94 -10.12 -0.04 -3.68 16 12 C 0.14 4.08 5.53 86.38 0.48 4.56 16 13 N -0.71 -17.26 5.54 -466.37 -2.59 -19.84 16 14 C 0.59 16.58 7.81 86.67 0.68 17.26 16 15 O -0.58 -20.36 14.67 -4.04 -0.06 -20.42 16 16 C -0.31 -7.41 6.13 -20.15 -0.12 -7.54 16 17 C 0.14 2.02 11.52 84.28 0.97 2.99 16 18 N -0.44 -6.59 7.29 -56.32 -0.41 -7.00 16 19 H 0.46 3.12 8.96 -213.43 -1.91 1.21 16 20 N -0.30 -7.25 12.63 -46.68 -0.59 -7.84 16 21 C 0.12 3.06 6.21 43.51 0.27 3.33 16 22 C 0.15 3.91 3.72 30.51 0.11 4.02 16 23 H 0.10 3.00 5.91 -2.39 -0.01 2.99 16 24 C -0.14 -2.90 6.56 32.11 0.21 -2.69 16 25 C -0.15 -2.25 7.03 31.91 0.22 -2.02 16 26 C 0.04 0.78 7.79 72.45 0.56 1.35 16 27 O -0.40 -10.74 11.02 -148.98 -1.64 -12.38 16 28 C 0.17 7.40 7.07 86.49 0.61 8.01 16 29 H 0.25 14.17 8.31 -92.70 -0.77 13.40 16 30 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.05 1.65 8.10 -2.39 -0.02 1.63 16 32 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 33 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.05 1.72 7.83 -2.39 -0.02 1.70 16 35 H 0.41 7.58 7.40 -92.71 -0.69 6.89 16 36 H 0.23 1.17 7.46 -2.91 -0.02 1.15 16 37 H 0.08 1.60 8.05 -2.39 -0.02 1.58 16 38 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.01 0.49 7.89 -2.39 -0.02 0.48 16 44 H 0.05 2.32 7.15 -2.38 -0.02 2.30 16 Total: -1.00 -79.28 365.17 -1.16 -80.44 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -1.56 Total: 15.00 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: 6.06 Total: 15.68 kcal Atomic # 7 Polarization: -119.44 SS G_CDS: -5.99 Total: -125.43 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -1.70 Total: -32.80 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -79.28 -1.16 -80.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031917624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.301 kcal (2) G-P(sol) polarization free energy of solvation -79.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds