Wall clock time and date at job start Tue Mar 31 2020 12:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86800 * 120.00091 * 2 1 4 4 H 1.48502 * 109.46986 * 89.99850 * 3 2 1 5 5 H 1.48503 * 109.47198 * 330.00376 * 3 2 1 6 6 H 1.48497 * 109.47483 * 210.00315 * 3 2 1 7 7 C 1.38816 * 120.00352 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99920 * 139.29153 * 7 2 1 9 9 N 1.36931 * 119.99720 * 319.29691 * 7 2 1 10 10 C 1.50169 * 120.53924 * 352.84565 * 9 7 2 11 11 C 1.46233 * 107.53454 * 109.56355 * 10 9 7 12 12 C 1.52537 * 114.27505 * 58.41356 * 11 10 9 13 13 C 1.50133 * 105.40949 * 270.59104 * 12 11 10 14 14 C 1.54843 * 110.81433 * 97.68395 * 13 12 11 15 15 H 1.08995 * 109.35588 * 81.33832 * 14 13 12 16 16 N 1.46502 * 109.35442 * 200.92630 * 14 13 12 17 17 C 1.34775 * 119.99355 * 205.00225 * 16 14 13 18 18 O 1.21571 * 120.00495 * 359.97438 * 17 16 14 19 19 C 1.47726 * 119.99836 * 179.97438 * 17 16 14 20 20 C 1.40941 * 125.97610 * 179.71046 * 19 17 16 21 21 C 1.36173 * 107.94993 * 179.75156 * 20 19 17 22 22 N 1.35799 * 107.30976 * 0.76966 * 21 20 19 23 23 N 1.31837 * 125.97041 * 0.02562 * 19 17 16 24 24 C 1.47432 * 108.06908 * 178.98686 * 22 21 20 25 25 C 1.54648 * 102.35236 * 344.74645 * 24 22 21 26 26 O 1.36118 * 140.88035 * 180.76262 * 21 20 19 27 27 C 1.43437 * 120.53768 * 172.56424 * 9 7 2 28 28 H 0.97004 * 120.00139 * 173.66007 * 1 2 3 29 29 H 1.09001 * 109.84345 * 229.07537 * 10 9 7 30 30 H 1.08998 * 109.84525 * 349.99259 * 10 9 7 31 31 H 1.09000 * 108.52361 * 179.64892 * 11 10 9 32 32 H 1.08999 * 108.52748 * 297.32552 * 11 10 9 33 33 H 1.09000 * 110.24917 * 29.56111 * 12 11 10 34 34 H 1.08998 * 110.24820 * 151.47518 * 12 11 10 35 35 H 1.08998 * 109.20362 * 218.03005 * 13 12 11 36 36 H 1.09001 * 109.20897 * 337.33548 * 13 12 11 37 37 H 0.96995 * 119.99932 * 24.99891 * 16 14 13 38 38 H 1.08004 * 126.02592 * 359.91383 * 20 19 17 39 39 H 1.09001 * 110.83032 * 102.95541 * 24 22 21 40 40 H 1.08997 * 110.82874 * 226.52676 * 24 22 21 41 41 H 1.09003 * 110.84593 * 266.64346 * 25 24 22 42 42 H 1.08997 * 110.85483 * 143.01528 * 25 24 22 43 43 H 1.09002 * 108.15737 * 33.30455 * 27 9 7 44 44 H 1.08996 * 108.16255 * 149.87050 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 1.4001 5 1 1.4475 2.6527 -0.7000 6 1 3.5476 1.4402 -0.7001 7 6 2.0103 -1.2021 0.0005 8 1 2.8942 -1.3155 -0.6094 9 7 1.5740 -2.2442 0.7744 10 6 0.4449 -2.0529 1.7458 11 6 -0.7127 -2.7782 1.2241 12 6 -0.4749 -4.2701 1.0128 13 6 0.0461 -4.3963 -0.3895 14 6 1.5917 -4.4893 -0.3960 15 1 1.8930 -5.5130 -0.1743 16 7 2.0952 -4.1134 -1.7194 17 6 3.2894 -4.5740 -2.1417 18 8 3.9489 -5.3008 -1.4244 19 6 3.7969 -4.1955 -3.4764 20 6 5.0246 -4.5975 -4.0400 21 6 5.1185 -4.0433 -5.2803 22 7 3.9961 -3.3053 -5.4792 23 7 3.1832 -3.4179 -4.3464 24 6 4.0916 -2.6770 -6.8095 25 6 5.5900 -2.8508 -7.1506 26 8 5.9534 -3.9935 -6.3542 27 6 2.1842 -3.5378 0.6660 28 1 -0.4850 -0.8349 -0.0928 29 1 0.7238 -2.4528 2.7207 30 1 0.2090 -0.9925 1.8347 31 1 -1.5414 -2.6551 1.9214 32 1 -0.9967 -2.3364 0.2690 33 1 0.2639 -4.6388 1.7244 34 1 -1.4096 -4.8201 1.1213 35 1 -0.3692 -5.2944 -0.8468 36 1 -0.2632 -3.5250 -0.9668 37 1 1.5692 -3.5332 -2.2916 38 1 5.7600 -5.2350 -3.5718 39 1 3.4664 -3.2018 -7.5318 40 1 3.8253 -1.6212 -6.7595 41 1 6.1605 -1.9717 -6.8509 42 1 5.7247 -3.0589 -8.2120 43 1 3.2406 -3.3970 0.4372 44 1 2.1150 -4.0285 1.6367 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034250510.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:19 Heat of formation + Delta-G solvation = 71.447309 kcal Electronic energy + Delta-G solvation = -27904.569411 eV Core-core repulsion = 24054.470146 eV Total energy + Delta-G solvation = -3850.099265 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.36952 -39.65866 -38.56260 -37.64878 -34.44652 -33.44256 -33.25182 -31.21314 -30.44451 -29.50365 -28.90212 -26.15121 -24.84796 -23.92586 -23.01504 -22.29124 -21.44643 -20.45158 -19.55391 -19.21332 -17.87534 -17.15349 -17.01946 -16.41938 -15.92078 -15.55498 -15.19378 -15.05047 -14.69752 -14.49525 -14.17232 -13.75592 -13.63478 -13.52333 -13.24820 -12.94348 -12.66216 -12.55954 -12.36012 -12.11509 -11.80741 -11.50370 -11.04184 -10.91561 -10.83477 -10.54183 -10.36727 -10.14017 -10.03630 -9.81588 -9.75185 -9.65354 -9.42047 -9.27494 -8.67956 -8.58541 -8.10749 -6.92385 -6.12754 -2.97532 1.36857 1.74860 2.11018 2.63184 3.53587 3.56001 3.58586 3.67822 3.74031 3.74406 4.25474 4.39165 4.64595 4.65605 4.83019 4.93409 5.17394 5.18451 5.22567 5.29694 5.35466 5.44970 5.52345 5.73835 5.84820 5.97243 6.01668 6.04264 6.28026 6.35009 6.38003 6.41471 6.63527 6.71226 6.72323 6.73576 6.89493 6.94288 7.08219 7.27098 7.28931 7.40914 7.99173 8.08019 8.57131 8.58995 9.12375 9.89916 10.33725 11.17625 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012708 B = 0.004308 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.770880 B = 6497.577444 C = 7913.943787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.016 4.016 3 Si 1.037 2.963 4 H -0.295 1.295 5 H -0.294 1.294 6 H -0.295 1.295 7 C -0.348 4.348 8 H 0.064 0.936 9 N -0.586 5.586 10 C 0.129 3.871 11 C -0.136 4.136 12 C -0.110 4.110 13 C -0.112 4.112 14 C 0.113 3.887 15 H 0.079 0.921 16 N -0.684 5.684 17 C 0.598 3.402 18 O -0.537 6.537 19 C 0.062 3.938 20 C -0.213 4.213 21 C 0.227 3.773 22 N -0.415 5.415 23 N -0.211 5.211 24 C 0.098 3.902 25 C 0.042 3.958 26 O -0.281 6.281 27 C 0.153 3.847 28 H 0.273 0.727 29 H 0.024 0.976 30 H 0.095 0.905 31 H 0.039 0.961 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.407 0.593 38 H 0.164 0.836 39 H 0.104 0.896 40 H 0.113 0.887 41 H 0.094 0.906 42 H 0.129 0.871 43 H 0.043 0.957 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.009 -7.318 -12.213 15.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.218 4.218 3 Si 0.868 3.132 4 H -0.222 1.222 5 H -0.221 1.221 6 H -0.222 1.222 7 C -0.476 4.476 8 H 0.082 0.918 9 N -0.308 5.308 10 C 0.005 3.995 11 C -0.175 4.175 12 C -0.148 4.148 13 C -0.150 4.150 14 C 0.005 3.995 15 H 0.097 0.903 16 N -0.333 5.333 17 C 0.381 3.619 18 O -0.412 6.412 19 C -0.106 4.106 20 C -0.243 4.243 21 C 0.060 3.940 22 N -0.211 5.211 23 N -0.040 5.040 24 C -0.023 4.023 25 C -0.035 4.035 26 O -0.188 6.188 27 C 0.022 3.978 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.113 0.887 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.242 0.758 38 H 0.182 0.818 39 H 0.122 0.878 40 H 0.132 0.868 41 H 0.113 0.887 42 H 0.147 0.853 43 H 0.061 0.939 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.380 -5.504 -11.992 13.902 hybrid contribution 0.595 -1.571 -0.708 1.823 sum 4.975 -7.075 -12.700 15.365 Atomic orbital electron populations 1.70828 1.07154 1.30582 1.45969 1.25346 0.95798 1.00522 1.00138 0.83933 0.75352 0.77374 0.76572 1.22229 1.22134 1.22153 1.19928 1.09194 0.92344 1.26130 0.91798 1.44402 1.38910 1.05038 1.42410 1.20602 0.86867 1.01587 0.90451 1.21102 0.99415 0.94577 1.02396 1.20943 0.99848 0.97442 0.96533 1.21672 0.94046 1.01311 0.97991 1.22890 0.93760 0.99586 0.83244 0.90334 1.45891 1.19150 1.49361 1.18915 1.16701 0.81774 0.80543 0.82918 1.90769 1.57448 1.37948 1.55068 1.22124 0.94422 0.98294 0.95739 1.20041 1.01181 1.12463 0.90621 1.20747 0.84905 0.97572 0.90799 1.50679 1.15808 1.40528 1.14132 1.77795 1.14608 1.20499 0.91111 1.23230 0.97863 1.01445 0.79783 1.24449 0.92332 0.88929 0.97750 1.87117 1.53411 1.45983 1.32273 1.20638 0.96347 0.86214 0.94619 0.91376 0.95773 0.88738 0.94206 0.91025 0.91674 0.92595 0.93526 0.90918 0.75799 0.81826 0.87787 0.86839 0.88748 0.85298 0.93903 0.94194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.50 11.99 55.49 0.67 -24.84 16 2 C -0.02 -0.44 4.53 -17.43 -0.08 -0.52 16 3 Si 1.04 25.16 30.06 -169.99 -5.11 20.06 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 7 C -0.35 -9.37 9.46 -15.06 -0.14 -9.51 16 8 H 0.06 1.82 8.05 -52.49 -0.42 1.40 16 9 N -0.59 -13.99 2.62 -175.41 -0.46 -14.45 16 10 C 0.13 2.88 5.22 -5.21 -0.03 2.85 16 11 C -0.14 -2.64 4.96 -30.18 -0.15 -2.79 16 12 C -0.11 -1.82 5.76 -28.39 -0.16 -1.99 16 13 C -0.11 -1.93 5.23 -27.19 -0.14 -2.08 16 14 C 0.11 2.11 2.91 -66.22 -0.19 1.91 16 15 H 0.08 1.43 7.57 -51.93 -0.39 1.04 16 16 N -0.68 -13.00 5.08 -53.13 -0.27 -13.27 16 17 C 0.60 11.62 7.64 -12.38 -0.09 11.53 16 18 O -0.54 -11.40 16.56 5.30 0.09 -11.32 16 19 C 0.06 1.10 7.09 -82.97 -0.59 0.52 16 20 C -0.21 -3.40 10.60 -39.30 -0.42 -3.82 16 21 C 0.23 3.20 8.32 -16.54 -0.14 3.06 16 22 N -0.41 -5.79 5.01 -59.63 -0.30 -6.09 16 23 N -0.21 -3.65 12.39 33.32 0.41 -3.24 16 24 C 0.10 0.77 8.10 -2.67 -0.02 0.75 16 25 C 0.04 0.25 8.08 38.02 0.31 0.56 16 26 O -0.28 -3.12 11.19 -20.12 -0.23 -3.35 16 27 C 0.15 3.25 4.74 -4.93 -0.02 3.22 16 28 H 0.27 7.49 4.96 -40.82 -0.20 7.29 16 29 H 0.02 0.50 8.13 -51.93 -0.42 0.08 16 30 H 0.09 2.41 5.61 -51.93 -0.29 2.11 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 1.57 4.65 -51.93 -0.24 1.33 16 33 H 0.06 1.07 6.28 -51.93 -0.33 0.75 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 1.42 6.58 -51.93 -0.34 1.08 16 37 H 0.41 7.82 8.14 -40.82 -0.33 7.49 16 38 H 0.16 2.40 8.06 -52.48 -0.42 1.98 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.13 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.04 1.01 7.81 -51.93 -0.41 0.61 16 44 H 0.04 0.79 6.89 -51.93 -0.36 0.44 16 LS Contribution 348.55 15.07 5.25 5.25 Total: -1.00 -32.93 348.55 -7.73 -40.66 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -5.91 Total: 6.87 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -1.87 Total: 3.71 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: 0.05 Total: -61.88 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.14 Total: -14.66 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -5.11 Total: 20.06 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.93 -7.73 -40.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034250510.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.104 kcal (2) G-P(sol) polarization free energy of solvation -32.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds