Wall clock time and date at job start Tue Mar 31 2020 12:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86800 * 120.00091 * 2 1 4 4 H 1.48502 * 109.46986 * 89.99850 * 3 2 1 5 5 H 1.48503 * 109.47198 * 330.00376 * 3 2 1 6 6 H 1.48497 * 109.47483 * 210.00315 * 3 2 1 7 7 C 1.38816 * 120.00352 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99920 * 139.29153 * 7 2 1 9 9 N 1.36931 * 119.99720 * 319.29691 * 7 2 1 10 10 C 1.50169 * 120.53924 * 352.84565 * 9 7 2 11 11 C 1.46233 * 107.53454 * 109.56355 * 10 9 7 12 12 C 1.52537 * 114.27505 * 58.41356 * 11 10 9 13 13 C 1.50133 * 105.40949 * 270.59104 * 12 11 10 14 14 C 1.54843 * 110.81433 * 97.68395 * 13 12 11 15 15 H 1.08995 * 109.35588 * 81.33832 * 14 13 12 16 16 N 1.46502 * 109.35442 * 200.92630 * 14 13 12 17 17 C 1.34775 * 119.99355 * 205.00225 * 16 14 13 18 18 O 1.21571 * 120.00495 * 359.97438 * 17 16 14 19 19 C 1.47726 * 119.99836 * 179.97438 * 17 16 14 20 20 C 1.40941 * 125.97610 * 179.71046 * 19 17 16 21 21 C 1.36173 * 107.94993 * 179.75156 * 20 19 17 22 22 N 1.35799 * 107.30976 * 0.76966 * 21 20 19 23 23 N 1.31837 * 125.97041 * 0.02562 * 19 17 16 24 24 C 1.47432 * 108.06908 * 178.98686 * 22 21 20 25 25 C 1.54648 * 102.35236 * 344.74645 * 24 22 21 26 26 O 1.36118 * 140.88035 * 180.76262 * 21 20 19 27 27 C 1.43437 * 120.53768 * 172.56424 * 9 7 2 28 28 H 0.97004 * 120.00139 * 173.66007 * 1 2 3 29 29 H 1.09001 * 109.84345 * 229.07537 * 10 9 7 30 30 H 1.08998 * 109.84525 * 349.99259 * 10 9 7 31 31 H 1.09000 * 108.52361 * 179.64892 * 11 10 9 32 32 H 1.08999 * 108.52748 * 297.32552 * 11 10 9 33 33 H 1.09000 * 110.24917 * 29.56111 * 12 11 10 34 34 H 1.08998 * 110.24820 * 151.47518 * 12 11 10 35 35 H 1.08998 * 109.20362 * 218.03005 * 13 12 11 36 36 H 1.09001 * 109.20897 * 337.33548 * 13 12 11 37 37 H 0.96995 * 119.99932 * 24.99891 * 16 14 13 38 38 H 1.08004 * 126.02592 * 359.91383 * 20 19 17 39 39 H 1.09001 * 110.83032 * 102.95541 * 24 22 21 40 40 H 1.08997 * 110.82874 * 226.52676 * 24 22 21 41 41 H 1.09003 * 110.84593 * 266.64346 * 25 24 22 42 42 H 1.08997 * 110.85483 * 143.01528 * 25 24 22 43 43 H 1.09002 * 108.15737 * 33.30455 * 27 9 7 44 44 H 1.08996 * 108.16255 * 149.87050 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 1.4001 5 1 1.4475 2.6527 -0.7000 6 1 3.5476 1.4402 -0.7001 7 6 2.0103 -1.2021 0.0005 8 1 2.8942 -1.3155 -0.6094 9 7 1.5740 -2.2442 0.7744 10 6 0.4449 -2.0529 1.7458 11 6 -0.7127 -2.7782 1.2241 12 6 -0.4749 -4.2701 1.0128 13 6 0.0461 -4.3963 -0.3895 14 6 1.5917 -4.4893 -0.3960 15 1 1.8930 -5.5130 -0.1743 16 7 2.0952 -4.1134 -1.7194 17 6 3.2894 -4.5740 -2.1417 18 8 3.9489 -5.3008 -1.4244 19 6 3.7969 -4.1955 -3.4764 20 6 5.0246 -4.5975 -4.0400 21 6 5.1185 -4.0433 -5.2803 22 7 3.9961 -3.3053 -5.4792 23 7 3.1832 -3.4179 -4.3464 24 6 4.0916 -2.6770 -6.8095 25 6 5.5900 -2.8508 -7.1506 26 8 5.9534 -3.9935 -6.3542 27 6 2.1842 -3.5378 0.6660 28 1 -0.4850 -0.8349 -0.0928 29 1 0.7238 -2.4528 2.7207 30 1 0.2090 -0.9925 1.8347 31 1 -1.5414 -2.6551 1.9214 32 1 -0.9967 -2.3364 0.2690 33 1 0.2639 -4.6388 1.7244 34 1 -1.4096 -4.8201 1.1213 35 1 -0.3692 -5.2944 -0.8468 36 1 -0.2632 -3.5250 -0.9668 37 1 1.5692 -3.5332 -2.2916 38 1 5.7600 -5.2350 -3.5718 39 1 3.4664 -3.2018 -7.5318 40 1 3.8253 -1.6212 -6.7595 41 1 6.1605 -1.9717 -6.8509 42 1 5.7247 -3.0589 -8.2120 43 1 3.2406 -3.3970 0.4372 44 1 2.1150 -4.0285 1.6367 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034250510.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:18 Heat of formation + Delta-G solvation = 47.186451 kcal Electronic energy + Delta-G solvation = -27905.621441 eV Core-core repulsion = 24054.470146 eV Total energy + Delta-G solvation = -3851.151295 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.39848 -41.10006 -39.84863 -39.09977 -36.14189 -34.93743 -34.33779 -33.02033 -31.93870 -30.77391 -29.93340 -27.89739 -26.26324 -25.23849 -24.46887 -23.61907 -22.52927 -22.07348 -21.01645 -20.78160 -19.01096 -18.88791 -18.12915 -17.50925 -17.30408 -16.77672 -16.62858 -16.31623 -16.12786 -16.03334 -15.58675 -15.38449 -15.07367 -14.91857 -14.37188 -14.28676 -14.00477 -13.95031 -13.77235 -13.45714 -13.17603 -12.75040 -12.55795 -12.44885 -12.30625 -12.15756 -12.12975 -11.96743 -11.75591 -11.53677 -11.30014 -11.23714 -11.16017 -10.44717 -10.29856 -10.00631 -9.72230 -8.85353 -8.26397 -5.06067 0.11648 0.76407 0.93511 1.58039 1.60898 1.67975 1.80181 2.20755 2.31635 2.67522 3.00395 3.13897 3.36985 3.47323 3.75214 3.80502 3.83189 4.01604 4.07816 4.21308 4.25723 4.39044 4.42077 4.43278 4.45199 4.49252 4.60365 4.69330 4.71899 4.75357 4.94133 5.08435 5.13107 5.14904 5.15957 5.30612 5.41215 5.51135 5.55376 5.65092 5.75707 5.93363 6.22019 6.49919 6.52838 7.05677 7.11814 7.88772 8.32305 9.06161 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012708 B = 0.004308 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.770880 B = 6497.577444 C = 7913.943787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.056 4.056 3 Si 1.080 2.920 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.290 1.290 7 C -0.346 4.346 8 H 0.039 0.961 9 N -0.598 5.598 10 C 0.131 3.869 11 C -0.129 4.129 12 C -0.101 4.101 13 C -0.103 4.103 14 C 0.118 3.882 15 H 0.089 0.911 16 N -0.684 5.684 17 C 0.597 3.403 18 O -0.562 6.562 19 C 0.040 3.960 20 C -0.237 4.237 21 C 0.240 3.760 22 N -0.411 5.411 23 N -0.238 5.238 24 C 0.083 3.917 25 C 0.042 3.958 26 O -0.286 6.286 27 C 0.155 3.845 28 H 0.271 0.729 29 H 0.041 0.959 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.046 0.954 37 H 0.404 0.596 38 H 0.166 0.834 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.108 0.892 42 H 0.176 0.824 43 H 0.011 0.989 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.070 -7.802 -13.679 16.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.255 4.255 3 Si 0.908 3.092 4 H -0.216 1.216 5 H -0.223 1.223 6 H -0.216 1.216 7 C -0.475 4.475 8 H 0.057 0.943 9 N -0.320 5.320 10 C 0.008 3.992 11 C -0.168 4.168 12 C -0.138 4.138 13 C -0.141 4.141 14 C 0.011 3.989 15 H 0.107 0.893 16 N -0.332 5.332 17 C 0.381 3.619 18 O -0.440 6.440 19 C -0.126 4.126 20 C -0.267 4.267 21 C 0.071 3.929 22 N -0.209 5.209 23 N -0.069 5.069 24 C -0.035 4.035 25 C -0.032 4.032 26 O -0.193 6.193 27 C 0.025 3.975 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.239 0.761 38 H 0.184 0.816 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.126 0.874 42 H 0.193 0.807 43 H 0.029 0.971 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.443 -5.995 -13.474 15.402 hybrid contribution 0.656 -1.391 -0.390 1.587 sum 5.099 -7.386 -13.864 16.516 Atomic orbital electron populations 1.70866 1.07540 1.30655 1.47735 1.26198 0.96062 1.02704 1.00532 0.83316 0.74480 0.74672 0.76683 1.21644 1.22284 1.21624 1.19823 1.07950 0.93690 1.26003 0.94338 1.44443 1.39765 1.05458 1.42341 1.20567 0.87485 1.00189 0.90960 1.20944 0.98528 0.96211 1.01090 1.20935 1.01607 0.95386 0.95893 1.21603 0.92553 1.01422 0.98548 1.22781 0.94877 0.98992 0.82289 0.89310 1.45914 1.19162 1.49219 1.18939 1.16971 0.81457 0.79960 0.83539 1.90730 1.58015 1.39109 1.56104 1.21875 0.95524 0.99748 0.95446 1.20115 1.01001 1.13658 0.91962 1.20699 0.85335 0.96133 0.90730 1.51110 1.14974 1.40074 1.14771 1.77651 1.15898 1.20925 0.92435 1.23864 0.99766 1.02522 0.77343 1.24954 0.90876 0.87958 0.99441 1.87142 1.52762 1.47978 1.31377 1.20639 0.94509 0.85943 0.96366 0.91636 0.94097 0.92070 0.92414 0.93754 0.91018 0.89320 0.90775 0.93479 0.76072 0.81610 0.85260 0.85274 0.87414 0.80684 0.97062 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.24 11.99 21.65 0.26 -52.98 16 2 C -0.06 -3.12 4.53 84.86 0.38 -2.74 16 3 Si 1.08 51.85 30.06 68.60 2.06 53.91 16 4 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 6 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 7 C -0.35 -19.16 9.46 84.04 0.80 -18.36 16 8 H 0.04 2.30 8.05 -2.91 -0.02 2.27 16 9 N -0.60 -29.01 2.62 -708.87 -1.86 -30.86 16 10 C 0.13 5.87 5.22 83.58 0.44 6.31 16 11 C -0.13 -4.89 4.96 28.36 0.14 -4.75 16 12 C -0.10 -3.09 5.76 29.52 0.17 -2.92 16 13 C -0.10 -3.43 5.23 30.30 0.16 -3.27 16 14 C 0.12 4.39 2.91 46.10 0.13 4.52 16 15 H 0.09 3.16 7.57 -2.39 -0.02 3.15 16 16 N -0.68 -26.79 5.08 -440.29 -2.24 -29.03 16 17 C 0.60 24.10 7.64 86.75 0.66 24.77 16 18 O -0.56 -24.72 16.56 -3.94 -0.07 -24.78 16 19 C 0.04 1.47 7.09 42.31 0.30 1.77 16 20 C -0.24 -7.75 10.60 22.45 0.24 -7.51 16 21 C 0.24 6.57 8.32 83.60 0.70 7.26 16 22 N -0.41 -11.05 5.01 -453.34 -2.27 -13.32 16 23 N -0.24 -8.38 12.39 -48.51 -0.60 -8.98 16 24 C 0.08 1.07 8.10 86.76 0.70 1.78 16 25 C 0.04 0.36 8.08 72.54 0.59 0.95 16 26 O -0.29 -5.67 11.19 -94.89 -1.06 -6.73 16 27 C 0.16 6.67 4.74 87.42 0.41 7.09 16 28 H 0.27 15.25 4.96 -92.71 -0.46 14.79 16 29 H 0.04 1.67 8.13 -2.39 -0.02 1.65 16 30 H 0.06 3.16 5.61 -2.39 -0.01 3.15 16 31 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.04 1.95 4.65 -2.39 -0.01 1.94 16 33 H 0.07 2.15 6.28 -2.39 -0.02 2.13 16 34 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.05 1.83 6.58 -2.39 -0.02 1.82 16 37 H 0.40 16.19 8.14 -92.71 -0.75 15.44 16 38 H 0.17 5.09 8.06 -2.91 -0.02 5.06 16 39 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.18 -0.09 8.14 -2.39 -0.02 -0.11 16 43 H 0.01 0.54 7.81 -2.39 -0.02 0.53 16 44 H 0.06 2.24 6.89 -2.39 -0.02 2.22 16 Total: -1.00 -74.45 348.55 0.64 -73.81 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: 0.60 Total: 24.07 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: 5.82 Total: 14.90 kcal Atomic # 7 Polarization: -128.47 SS G_CDS: -6.71 Total: -135.17 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -1.13 Total: -31.51 kcal Atomic # 14 Polarization: 51.85 SS G_CDS: 2.06 Total: 53.91 kcal Total: -74.45 0.64 -73.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034250510.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.994 kcal (2) G-P(sol) polarization free energy of solvation -74.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds