Wall clock time and date at job start Tue Mar 31 2020 12:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99897 * 2 1 4 4 H 1.48505 * 109.47217 * 274.73588 * 3 2 1 5 5 H 1.48494 * 109.47029 * 34.73843 * 3 2 1 6 6 H 1.48502 * 109.46893 * 154.74065 * 3 2 1 7 7 C 1.38812 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99751 * 196.57986 * 7 2 1 9 9 N 1.36935 * 120.00412 * 16.58008 * 7 2 1 10 10 C 1.47612 * 118.64169 * 27.05679 * 9 7 2 11 11 C 1.53946 * 112.13896 * 137.87013 * 10 9 7 12 12 C 1.50883 * 110.09517 * 319.43099 * 11 10 9 13 13 C 1.52569 * 109.35091 * 91.89531 * 12 11 10 14 14 C 1.47092 * 114.32673 * 274.97872 * 13 12 11 15 15 H 1.09002 * 109.33351 * 302.72099 * 14 13 12 16 16 N 1.46498 * 109.33162 * 183.05905 * 14 13 12 17 17 C 1.34779 * 119.99783 * 154.37766 * 16 14 13 18 18 O 1.21565 * 120.00238 * 0.27716 * 17 16 14 19 19 C 1.47724 * 119.99962 * 180.27941 * 17 16 14 20 20 C 1.40947 * 125.97578 * 179.97438 * 19 17 16 21 21 C 1.36174 * 107.94727 * 180.11562 * 20 19 17 22 22 N 1.35798 * 107.31725 * 359.61512 * 21 20 19 23 23 N 1.31838 * 125.97163 * 359.69563 * 19 17 16 24 24 C 1.47426 * 108.07141 * 180.76927 * 22 21 20 25 25 C 1.54646 * 102.35955 * 15.19146 * 24 22 21 26 26 O 1.36118 * 140.87629 * 179.13031 * 21 20 19 27 27 C 1.44657 * 118.81414 * 207.06707 * 9 7 2 28 28 H 0.96997 * 120.00374 * 0.02562 * 1 2 3 29 29 H 1.09004 * 108.94614 * 17.18207 * 10 9 7 30 30 H 1.09002 * 108.94348 * 258.55446 * 10 9 7 31 31 H 1.09004 * 109.36090 * 199.24380 * 11 10 9 32 32 H 1.08994 * 109.26400 * 79.56072 * 11 10 9 33 33 H 1.09000 * 109.48996 * 331.93119 * 12 11 10 34 34 H 1.08995 * 109.49178 * 211.85357 * 12 11 10 35 35 H 1.09004 * 108.51278 * 153.72879 * 13 12 11 36 36 H 1.08992 * 108.39312 * 36.14607 * 13 12 11 37 37 H 0.96995 * 120.00115 * 334.65717 * 16 14 13 38 38 H 1.07994 * 126.02258 * 0.10226 * 20 19 17 39 39 H 1.08994 * 110.82901 * 133.41324 * 24 22 21 40 40 H 1.08999 * 110.83023 * 256.97855 * 24 22 21 41 41 H 1.09003 * 110.84891 * 93.36594 * 25 24 22 42 42 H 1.08996 * 110.85672 * 216.99449 * 25 24 22 43 43 H 1.09003 * 109.61526 * 150.83018 * 27 9 7 44 44 H 1.08998 * 109.33051 * 30.88953 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3976 2.1043 -1.3953 5 1 1.5013 2.6216 0.7978 6 1 3.5942 1.4133 0.5975 7 6 2.0102 -1.2022 -0.0005 8 1 3.0565 -1.2217 0.2663 9 7 1.3683 -2.3633 -0.3394 10 6 0.2039 -2.2901 -1.2437 11 6 0.2165 -3.4119 -2.2979 12 6 1.6189 -3.6239 -2.8124 13 6 2.3063 -4.7003 -1.9777 14 6 2.9324 -4.2022 -0.7434 15 1 3.6563 -3.4265 -0.9936 16 7 3.6187 -5.3063 -0.0680 17 6 4.6579 -5.0529 0.7519 18 8 5.0227 -3.9078 0.9349 19 6 5.3539 -6.1667 1.4281 20 6 6.4496 -6.0469 2.3065 21 6 6.8005 -7.2984 2.7128 22 7 5.9480 -8.1709 2.1161 23 7 5.0553 -7.4463 1.3195 24 6 6.3018 -9.5316 2.5597 25 6 7.2087 -9.2561 3.7817 26 8 7.7110 -7.9374 3.4973 27 6 1.8561 -3.6131 0.2015 28 1 -0.4850 0.8400 -0.0004 29 1 0.2109 -1.3261 -1.7524 30 1 -0.7086 -2.3699 -0.6527 31 1 -0.4349 -3.1358 -3.1271 32 1 -0.1459 -4.3348 -1.8452 33 1 2.1790 -2.6919 -2.7365 34 1 1.5799 -3.9415 -3.8544 35 1 3.0747 -5.1740 -2.5887 36 1 1.5654 -5.4536 -1.7103 37 1 3.3277 -6.2200 -0.2141 38 1 6.9268 -5.1251 2.6046 39 1 5.4115 -10.0867 2.8551 40 1 6.8505 -10.0625 1.7818 41 1 6.6282 -9.2595 4.7043 42 1 8.0228 -9.9791 3.8317 43 1 1.0303 -4.3183 0.2953 44 1 2.2938 -3.4347 1.1837 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034250514.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:23 Heat of formation + Delta-G solvation = 61.374117 kcal Electronic energy + Delta-G solvation = -27217.228654 eV Core-core repulsion = 23366.692582 eV Total energy + Delta-G solvation = -3850.536072 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.52467 -39.78240 -38.60991 -37.42809 -34.52641 -33.58872 -33.16830 -30.99611 -30.57443 -29.54722 -29.03793 -26.03110 -24.94124 -24.02254 -23.22942 -22.40308 -21.59104 -20.14550 -19.76329 -19.09983 -18.02027 -17.24536 -16.57021 -16.51496 -16.13264 -15.65502 -15.31645 -15.06733 -14.64737 -14.48455 -14.24257 -13.78784 -13.71139 -13.41667 -13.08897 -13.04990 -12.72182 -12.57708 -12.46144 -12.04493 -11.69312 -11.46744 -11.12434 -10.99626 -10.86243 -10.71431 -10.50529 -10.07236 -10.05794 -9.81116 -9.66141 -9.56829 -9.51046 -9.42210 -8.76776 -8.72964 -8.25231 -6.55989 -5.67641 -3.11056 1.19434 1.57448 1.98059 2.49164 3.37360 3.47783 3.54542 3.55305 3.56366 3.59983 4.09793 4.21753 4.51131 4.62204 4.65808 4.78199 5.01780 5.13455 5.31257 5.38403 5.42293 5.51620 5.59759 5.72742 5.81686 6.04151 6.09063 6.21055 6.22692 6.36740 6.45135 6.58439 6.65036 6.68567 6.75711 6.81619 6.88226 6.99285 7.16232 7.23775 7.50700 7.77749 7.85282 8.00330 8.48221 8.59404 9.35555 10.00569 10.45163 11.40148 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018651 B = 0.003079 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.890063 B = 9092.947570 C =10145.896430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.004 3.996 3 Si 0.899 3.101 4 H -0.289 1.289 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.255 4.255 8 H 0.071 0.929 9 N -0.583 5.583 10 C 0.176 3.824 11 C -0.144 4.144 12 C -0.100 4.100 13 C -0.113 4.113 14 C 0.113 3.887 15 H 0.091 0.909 16 N -0.706 5.706 17 C 0.594 3.406 18 O -0.509 6.509 19 C 0.065 3.935 20 C -0.211 4.211 21 C 0.230 3.770 22 N -0.417 5.417 23 N -0.222 5.222 24 C 0.099 3.901 25 C 0.041 3.959 26 O -0.279 6.279 27 C 0.157 3.843 28 H 0.252 0.748 29 H 0.073 0.927 30 H 0.025 0.975 31 H 0.052 0.948 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.398 0.602 38 H 0.167 0.833 39 H 0.112 0.888 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.130 0.870 43 H 0.032 0.968 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.708 -22.389 2.790 24.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.194 4.194 3 Si 0.729 3.271 4 H -0.216 1.216 5 H -0.219 1.219 6 H -0.202 1.202 7 C -0.384 4.384 8 H 0.089 0.911 9 N -0.304 5.304 10 C 0.051 3.949 11 C -0.182 4.182 12 C -0.138 4.138 13 C -0.151 4.151 14 C 0.007 3.993 15 H 0.109 0.891 16 N -0.356 5.356 17 C 0.376 3.624 18 O -0.381 6.381 19 C -0.103 4.103 20 C -0.241 4.241 21 C 0.063 3.937 22 N -0.214 5.214 23 N -0.052 5.052 24 C -0.022 4.022 25 C -0.035 4.035 26 O -0.186 6.186 27 C 0.027 3.973 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.232 0.768 38 H 0.184 0.816 39 H 0.130 0.870 40 H 0.122 0.878 41 H 0.113 0.887 42 H 0.148 0.852 43 H 0.051 0.949 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.217 -22.295 2.459 24.647 hybrid contribution 0.782 0.557 0.365 1.027 sum 10.999 -21.738 2.824 24.525 Atomic orbital electron populations 1.70090 1.05214 1.25277 1.54474 1.25019 0.95218 0.98350 1.00786 0.86304 0.79485 0.83806 0.77494 1.21573 1.21947 1.20153 1.19347 0.93033 0.84832 1.41231 0.91141 1.43605 1.33892 1.01483 1.51406 1.21041 0.88876 0.95751 0.89228 1.22080 0.95849 1.00651 0.99670 1.20827 0.97089 0.99390 0.96522 1.20581 0.99423 0.98991 0.96069 1.21357 0.96534 0.87786 0.93580 0.89057 1.46043 1.32108 1.11179 1.46303 1.16748 0.80141 0.86090 0.79435 1.90889 1.65247 1.20088 1.61831 1.22208 0.97094 0.91737 0.99228 1.20128 1.02280 0.94352 1.07352 1.20747 0.88050 0.91851 0.93096 1.50663 1.26519 1.06801 1.37392 1.77657 1.11100 1.02815 1.13673 1.23222 1.00901 0.81002 0.97103 1.24454 0.98584 0.83001 0.97471 1.87145 1.38447 1.27090 1.65932 1.20941 0.93296 0.88424 0.94625 0.93851 0.90854 0.95717 0.92922 0.93650 0.90393 0.93376 0.93304 0.92736 0.76766 0.81593 0.86988 0.87761 0.88748 0.85245 0.94928 0.93175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.69 11.11 55.49 0.62 -26.08 16 2 C 0.00 0.13 4.84 -17.43 -0.08 0.04 16 3 Si 0.90 22.61 29.59 -169.99 -5.03 17.58 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.25 -7.19 9.44 -15.06 -0.14 -7.33 16 8 H 0.07 2.06 7.88 -52.49 -0.41 1.64 16 9 N -0.58 -14.68 2.27 -172.02 -0.39 -15.07 16 10 C 0.18 4.19 4.67 -2.94 -0.01 4.18 16 11 C -0.14 -2.66 5.70 -27.30 -0.16 -2.81 16 12 C -0.10 -1.73 5.51 -28.01 -0.15 -1.88 16 13 C -0.11 -1.80 4.55 -29.79 -0.14 -1.93 16 14 C 0.11 2.11 2.34 -69.78 -0.16 1.94 16 15 H 0.09 1.99 7.56 -51.93 -0.39 1.59 16 16 N -0.71 -11.39 5.05 -56.61 -0.29 -11.67 16 17 C 0.59 10.56 7.79 -12.38 -0.10 10.46 16 18 O -0.51 -11.01 16.55 5.31 0.09 -10.92 16 19 C 0.06 1.00 7.09 -82.96 -0.59 0.41 16 20 C -0.21 -3.03 10.60 -39.30 -0.42 -3.45 16 21 C 0.23 2.79 8.32 -16.54 -0.14 2.66 16 22 N -0.42 -4.68 5.01 -59.64 -0.30 -4.97 16 23 N -0.22 -3.08 12.39 33.32 0.41 -2.67 16 24 C 0.10 0.52 8.10 -2.67 -0.02 0.50 16 25 C 0.04 0.17 8.08 38.02 0.31 0.48 16 26 O -0.28 -2.66 11.19 -20.12 -0.23 -2.88 16 27 C 0.16 3.43 5.24 -4.04 -0.02 3.41 16 28 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.07 1.94 6.40 -51.93 -0.33 1.61 16 30 H 0.02 0.64 8.03 -51.93 -0.42 0.22 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.04 0.79 7.31 -51.93 -0.38 0.41 16 33 H 0.08 1.57 7.48 -51.93 -0.39 1.18 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.80 7.34 -51.93 -0.38 0.42 16 37 H 0.40 5.42 8.27 -40.82 -0.34 5.08 16 38 H 0.17 2.29 8.06 -52.49 -0.42 1.87 16 39 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.13 0.09 8.14 -51.93 -0.42 -0.33 16 43 H 0.03 0.67 8.05 -51.93 -0.42 0.25 16 44 H 0.05 1.21 7.98 -51.93 -0.41 0.79 16 LS Contribution 356.42 15.07 5.37 5.37 Total: -1.00 -34.66 356.42 -7.96 -42.62 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.39 Total: 2.03 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -1.82 Total: 6.67 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: 0.05 Total: -60.46 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.14 Total: -13.80 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.03 Total: 17.58 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.66 -7.96 -42.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034250514.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.989 kcal (2) G-P(sol) polarization free energy of solvation -34.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds